Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001179.1

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

255187 .. 256197

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001179.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgatgatggactcaaatactaaacctctgaagaatagcagtcctccttccccactgaagttttatgagcttttgggtttcgtgggaattctaagggaagctccgaaacttttcttgagaaatgggaaactcatgtcctctatcaccatactcatgatttgttttagttctgtcctccttttgatgaatatcatctcaatcaaaccatcaatcactgacttcatcttcaaggcaagctttctaaccgtgacagacaagagtagccccgaatttgccaaccttataacttctttgaaaattgacctccgattagttgtgggactagaggggattttcattttagcattctcctttacctcgctattttttgcaacctcatcaatcttagcatcaggggtaacatactgtggtaaaaacttatctgtcaaggaactcctatcaagggtagtgaaattgttgaaaagaccgtttgtcacttggttttacataacgctgcttcatctaggctattgtctatttcttacagcatttctggttcctttggttgtgcttttcagtcctacgttcacactttcgggtttctctataatcgtattaattgtagctgtacttttccaagcttatcttaccgttgtttggaacttagcactcattgtttcagtacttgaggaaaaatggggcattgaggcactagggaaggcagaacagcttatcaaaggatctaagctacgagggcttttcctgaatattctttttggagcattctctgttgctgtggtctacggtttgaagaaaattggcaatatagcattttcaggaagtcaaatagtaattccattgctcctcttaaactccatgtccttgatcaggatgttttcactaatggcatatacagtcctttactatgagtgcaaggagactcatggagaagagcttgaaatgcaaggaggcgtcgaatatactaaagttaacgcagtcaccgcacttctcagttcagatgaagaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

37.22

Weight (kDa)

8.96

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	1 cut(s)	981
AclWI	GGATC	1 cut(s)	727
AcsI	RAATTY	2 cut(s)	87, 269
AcuI	CTGAAG	2 cut(s)	50, 77
AcyI	GRCGYC	1 cut(s)	951
AfaI	GTAC	2 cut(s)	609, 663
AfiI	CCNNNNNNNGG	3 cut(s)	442, 636, 867
AgsI	TTSAA	5 cut(s)	229, 295, 460, 790, 938
AhdI	GACNNNNNGTC	1 cut(s)	470
AluBI	AGCT	8 cut(s)	70, 101, 237, 605, 620, 709, 727, 934
AluI	AGCT	8 cut(s)	70, 101, 237, 605, 620, 709, 727, 934
Alw26I	GTCTC	1 cut(s)	911
AlwI	GGATC	1 cut(s)	727
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	87, 269
AseI	ATTAAT	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	136, 970
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	864
BcoDI	GTCTC	1 cut(s)	911
BfaI	CTAG	3 cut(s)	323, 503, 692
BisI	GCNGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	495
BmcAI	AGTACT	1 cut(s)	663
BmeRI	GACNNNNNGTC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	1 cut(s)	398
BpuEI	CTTGAG	2 cut(s)	136, 686
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	951
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 636, 867
Bse3DI	GCAATG	1 cut(s)	836
Bse8I	GATNNNNATC	1 cut(s)	188
BseGI	GGATG	1 cut(s)	876
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	3 cut(s)	442, 636, 867
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	1003
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	442, 636, 867
BsmAI	GTCTC	1 cut(s)	911
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	2 cut(s)	344, 761
Bsp143I	GATC	2 cut(s)	719, 864
BspACI	CCGC	1 cut(s)	981
BspCNI	CTCAG	1 cut(s)	1002
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	727
BspQI	GCTCTTC	1 cut(s)	924
BsrDI	GCAATG	1 cut(s)	836
BssMI	GATC	2 cut(s)	719, 864
BssNI	GRCGYC	1 cut(s)	951
Bst4CI	ACNGT	6 cut(s)	247, 407, 468, 631, 785, 895
Bst6I	CTCTTC	1 cut(s)	924
BstACI	GRCGYC	1 cut(s)	951
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	5 cut(s)	92, 385, 643, 723, 989
BstENI	CCTNNNNNAGG	1 cut(s)	865
BstF5I	GGATG	1 cut(s)	876
BstKTI	GATC	2 cut(s)	722, 867
BstMAI	GTCTC	1 cut(s)	911
BstMBI	GATC	2 cut(s)	719, 864
BstMWI	GCNNNNNNNGC	3 cut(s)	733, 940, 980
BstV1I	GCAGC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BtsCI	GGATG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	53, 213
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	153
CseI	GACGC	1 cut(s)	940
Csp6I	GTAC	2 cut(s)	608, 662
CviAII	CATG	4 cut(s)	133, 154, 856, 923
CviQI	GTAC	2 cut(s)	608, 662
DdeI	CTNAG	5 cut(s)	92, 385, 643, 723, 989
DpnI	GATC	2 cut(s)	721, 866
DpnII	GATC	2 cut(s)	719, 864
DriI	GACNNNNNGTC	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	924
Eam1105I	GACNNNNNGTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	924
Eco57I	CTGAAG	2 cut(s)	50, 77
EcoNI	CCTNNNNNAGG	1 cut(s)	865
EcoRI	GAATTC	1 cut(s)	87
FaeI	CATG	4 cut(s)	136, 157, 859, 926
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 609, 641
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	4 cut(s)	132, 153, 855, 922
FbaI	TGATCA	1 cut(s)	864
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	1 cut(s)	494
FokI	GGATG	1 cut(s)	883
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	3 cut(s)	323, 503, 692
GluI	GCNGC	1 cut(s)	494
HgaI	GACGC	1 cut(s)	940
Hin1I	GRCGYC	1 cut(s)	951
Hin1II	CATG	4 cut(s)	136, 157, 859, 926
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	2 cut(s)	235, 618
HinfI	GANTC	2 cut(s)	11, 919
HpaI	GTTAAC	1 cut(s)	970
HphI	GGTGA	2 cut(s)	136, 970
Hpy166II	GTNNAC	3 cut(s)	567, 781, 970
Hpy188I	TCNGA	4 cut(s)	30, 105, 308, 997
Hpy188III	TCNNGA	5 cut(s)	115, 154, 742, 816, 868
Hpy8I	GTNNAC	3 cut(s)	567, 781, 970
Hpy99I	CGWCG	1 cut(s)	956
HpyAV	CCTTC	2 cut(s)	57, 691
HpyCH4III	ACNGT	6 cut(s)	247, 407, 468, 631, 785, 895
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	3 cut(s)	371, 912, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	733, 940, 980
HpyF3I	CTNAG	5 cut(s)	92, 385, 643, 723, 989
HpySE526I	ACGT	1 cut(s)	563
Hsp92I	GRCGYC	1 cut(s)	951
Hsp92II	CATG	4 cut(s)	136, 157, 859, 926
Ksp22I	TGATCA	1 cut(s)	864
KspAI	GTTAAC	1 cut(s)	970
Kzo9I	GATC	2 cut(s)	719, 864
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	3 cut(s)	106, 758, 846
LpnPI	CCDG	5 cut(s)	378, 518, 755, 801, 853
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	3 cut(s)	323, 503, 692
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	4 cut(s)	247, 397, 472, 976
MalI	GATC	2 cut(s)	721, 866
MboI	GATC	2 cut(s)	719, 864
MboII	GAAGA	4 cut(s)	43, 217, 802, 941
MflI	RGATCY	1 cut(s)	719
MluCI	AATT	7 cut(s)	87, 269, 297, 452, 597, 795, 831
MlyI	GAGTC	2 cut(s)	5, 913
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	3 cut(s)	596, 848, 969
MslI	CAYNNNNRTG	1 cut(s)	152
Mva1269I	GAATGC	2 cut(s)	344, 761
MwoI	GCNNNNNNNGC	3 cut(s)	733, 940, 980
NdeII	GATC	2 cut(s)	719, 864
NlaIII	CATG	4 cut(s)	136, 157, 859, 926
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	3 cut(s)	247, 472, 976
PagI	TCATGA	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	924
PctI	GAATGC	2 cut(s)	344, 761
PdmI	GAANNNNTTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	495
PleI	GAGTC	2 cut(s)	5, 913
PpsI	GAGTC	2 cut(s)	5, 913
PshBI	ATTAAT	1 cut(s)	596
PsiI	TTATAA	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	2 cut(s)	609, 663
RsaNI	GTAC	2 cut(s)	608, 662
RseI	CAYNNNNRTG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	3 cut(s)	596, 848, 969
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	719, 864
ScaI	AGTACT	1 cut(s)	663
SchI	GAGTC	2 cut(s)	5, 913
SfaNI	GCATC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	115, 665
SmoI	CTYRAG	2 cut(s)	115, 665
Sse9I	AATT	7 cut(s)	87, 269, 297, 452, 597, 795, 831
SsiI	CCGC	1 cut(s)	981
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	323, 503, 692
TaaI	ACNGT	6 cut(s)	247, 407, 468, 631, 785, 895
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	1 cut(s)	954
TasI	AATT	7 cut(s)	87, 269, 297, 452, 597, 795, 831
TatI	WGTACW	2 cut(s)	607, 661
Tru1I	TTAA	3 cut(s)	596, 848, 969
Tru9I	TTAA	3 cut(s)	596, 848, 969
TscAI	CASTG	2 cut(s)	60, 220
TseFI	GTSAC	3 cut(s)	247, 472, 976
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	3 cut(s)	247, 472, 976
TspDTI	ATGAA	4 cut(s)	200, 211, 325, 488
TspRI	CASTG	2 cut(s)	60, 220
VspI	ATTAAT	1 cut(s)	596
XagI	CCTNNNNNAGG	1 cut(s)	865
XapI	RAATTY	2 cut(s)	87, 269
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	3 cut(s)	323, 503, 692
ZrmI	AGTACT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.