Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

71365919 .. 71366248

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG447400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAGGCACTGGGAAAAGCTGGACAGCTTATTAAGGGATCAAAGCTACGAGAATTTTTTCTGAATGTTGTTATAGCCACCTCCTTGTGGTTGTTATTTGTTTTGTACAGGATTGTCGCTAAAGCTATACCAGGAAAAGCAGTGATAATTCCATTGCTCCTCTTAAATTGTATCAGCTGCCTCATAGCTATGGTTTCGCGAATGGCATACACAGTCCTGTACTATGAGTCCAAGGCGACTCATGGTGAAGAGCTTGAACGTACTGCAAGGAAGCTTGGACATGCTAAGGTTACCTCTGATACCCCTCTTATCAATGCAGATGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.99

Weight (kDa)

9.43

Isoelectric Point (pI)

13.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	199
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	3 cut(s)	107, 221, 262
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	8 cut(s)	20, 28, 46, 125, 177, 188, 253, 274
AluI	AGCT	8 cut(s)	20, 28, 46, 125, 177, 188, 253, 274
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	38
Bsp68I	TCGCGA	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	285
BstEII	GGTNACC	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	164
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	8, 147
BtuMI	TCGCGA	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	106, 220, 261
CviAII	CATG	2 cut(s)	242, 281
CviJI	RGCY	9 cut(s)	20, 28, 46, 77, 125, 177, 188, 253, 274
CviKI_1	RGCY	9 cut(s)	20, 28, 46, 77, 125, 177, 188, 253, 274
CviQI	GTAC	3 cut(s)	106, 220, 261
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	245, 284
FaiI	YATR	8 cut(s)	74, 128, 185, 191, 208, 225, 243, 282
FatI	CATG	2 cut(s)	241, 280
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	245, 284
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	227, 238
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	63, 298
Hpy188III	TCNNGA	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	266, 317, 323
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	2 cut(s)	245, 284
Kzo9I	GATC	1 cut(s)	38
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	6, 94, 117, 144, 230
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	260
MluCI	AATT	4 cut(s)	53, 147, 166, 324
MlyI	GAGTC	2 cut(s)	232, 236
MnlI	CCTC	5 cut(s)	91, 170, 191, 304, 315
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	33, 164
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	199
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	245, 284
NruI	TCGCGA	1 cut(s)	199
NspI	RCATGY	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	2 cut(s)	232, 235
PpsI	GAGTC	2 cut(s)	232, 235
Psp6I	CCWGG	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	177
RruI	TCGCGA	1 cut(s)	199
RsaI	GTAC	3 cut(s)	107, 221, 262
RsaNI	GTAC	3 cut(s)	106, 220, 261
RseI	CAYNNNNRTG	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	33, 164
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	232, 236
ScrFI	CCNGG	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	53, 147, 166, 324
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	262
TasI	AATT	4 cut(s)	53, 147, 166, 324
TatI	WGTACW	2 cut(s)	105, 219
Tru1I	TTAA	2 cut(s)	33, 164
Tru9I	TTAA	2 cut(s)	33, 164
TscAI	CASTG	2 cut(s)	15, 147
TseI	GCWGC	1 cut(s)	177
TspRI	CASTG	2 cut(s)	15, 147
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.