Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

24592300 .. 24593307

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATGGACTCAAATACTAAACCTCTGAAGAATAGCAGTCCTCCTTCCCCACTGAAGTTTTATGAGCTTTTGGGTTTCGTGGGAATTCTAAGGGAAGCTCCGAAACTTTTCTTGAGAAATGGGAAACTCATGTCCTCTATCACCATACTCATGATTTGTTTTAGTTCTGTCCTCCTGTTGATGAATATCATCTCAATCAAACCATCAATCACTGACTTCATCTTCAAGGCAAGCTTTCTAACCGTGACAGACAAGAGTAGCCCCGAATTTGCCGACCTTATAACTTCTTTGAAAATTGACCTCCGATTAGTTGTGGGACTAGAGGGGATTTTCATTTTAACGTTCTCCTTTACCTCGCTGTTTTTTGCAACCTCATCAATCCTAGCATCAGGGGTAACATACTGTGGTAAAAACTTTTCTGTCAAGGAACTCCTATCAAGGGTAGTGAAATTGTTGAAAAGACCGTTTGTCACTTGGTTTTACATAATGCTGCTTCATCTAGGCTATTGTCTATTTCTTACAGCATTTCTGGTTCCTTTGGTTGTGCTTTTCAGTCCTAAGTTCACACTTTCGGGTTTCTCTATAATCGTATTAATTGTAGCTGTACTTTTCCAAGCTTATCTTACCGTTGTTTGGAACTTAGCACTCATTGTTTCAGTACTTGAGGAAAAATGGGGCATTGAGGCACTAGGGAAGGCAGAACAGCTTATCAAAGGATCTAAGCTACGAGGGCTTTTCCTGAATATTCTTTTTGGAGCATTCTCTGTTGCTGTGGTCTACGGTTTGAAGAAAATTGGCAATATAGCATTTTCAGGAAGTCAAATAGTAATTCCATTGCTCCTCTTAAACTCCATGTCCTTGATCAGGATGTTTTCACTAATGGCATATACAGTCCTTTACTATGAGTGCAAGGAGACTCATGGAGAAGAGCTTGAAATGCAAGGAGGCGTTGAATATTCTAAAGTTAACGCAGTCACCCCACTTCTCAGTTCAGATGAAGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

37.23

Weight (kDa)

8.95

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	777
AclI	AACGTT	1 cut(s)	341
AclWI	GGATC	1 cut(s)	724
AcsI	RAATTY	2 cut(s)	84, 266
AcuI	CTGAAG	2 cut(s)	47, 74
AfaI	GTAC	2 cut(s)	606, 660
AfiI	CCNNNNNNNGG	3 cut(s)	439, 633, 864
AgsI	TTSAA	6 cut(s)	226, 292, 457, 787, 935, 953
AhdI	GACNNNNNGTC	1 cut(s)	467
AluBI	AGCT	8 cut(s)	67, 98, 234, 602, 617, 706, 724, 931
AluI	AGCT	8 cut(s)	67, 98, 234, 602, 617, 706, 724, 931
Alw26I	GTCTC	1 cut(s)	908
AlwI	GGATC	1 cut(s)	724
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	2 cut(s)	84, 266
AseI	ATTAAT	1 cut(s)	593
Asp700I	GAANNNNTTC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	133, 967
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	908
BfaI	CTAG	4 cut(s)	320, 383, 500, 689
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
BmcAI	AGTACT	1 cut(s)	660
BmeRI	GACNNNNNGTC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	534
BmsI	GCATC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	133, 683
BsaBI	GATNNNNATC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 633, 864
Bse3DI	GCAATG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	185
BseGI	GGATG	1 cut(s)	873
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	3 cut(s)	439, 633, 864
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	1 cut(s)	1000
BseRI	GAGGAG	1 cut(s)	830
BseXI	GCAGC	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	439, 633, 864
BsmAI	GTCTC	1 cut(s)	908
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	758
Bsp143I	GATC	2 cut(s)	716, 861
BspCNI	CTCAG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	921
BsrDI	GCAATG	1 cut(s)	833
BssMI	GATC	2 cut(s)	716, 861
Bst4CI	ACNGT	6 cut(s)	244, 404, 465, 628, 782, 892
Bst6I	CTCTTC	1 cut(s)	921
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	5 cut(s)	89, 558, 640, 720, 986
BstENI	CCTNNNNNAGG	1 cut(s)	862
BstF5I	GGATG	1 cut(s)	873
BstKTI	GATC	2 cut(s)	719, 864
BstMAI	GTCTC	1 cut(s)	908
BstMBI	GATC	2 cut(s)	716, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	730, 937
BstV1I	GCAGC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	873
BtsIMutI	CAGTG	2 cut(s)	50, 210
Cac8I	GCNNGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	605, 659
CviAII	CATG	4 cut(s)	130, 151, 853, 920
CviQI	GTAC	2 cut(s)	605, 659
DdeI	CTNAG	5 cut(s)	89, 558, 640, 720, 986
DpnI	GATC	2 cut(s)	718, 863
DpnII	GATC	2 cut(s)	716, 861
DriI	GACNNNNNGTC	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	921
Eam1105I	GACNNNNNGTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	921
Eco57I	CTGAAG	2 cut(s)	47, 74
EcoNI	CCTNNNNNAGG	1 cut(s)	862
EcoRI	GAATTC	1 cut(s)	84
FaeI	CATG	4 cut(s)	133, 154, 856, 923
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 606, 638
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	129, 150, 852, 919
FbaI	TGATCA	1 cut(s)	861
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	1 cut(s)	880
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	4 cut(s)	320, 383, 500, 689
GluI	GCNGC	1 cut(s)	491
Hin1II	CATG	4 cut(s)	133, 154, 856, 923
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	2 cut(s)	232, 615
HinfI	GANTC	2 cut(s)	8, 916
HpaI	GTTAAC	1 cut(s)	967
HphI	GGTGA	2 cut(s)	133, 967
Hpy166II	GTNNAC	3 cut(s)	564, 778, 967
Hpy188I	TCNGA	4 cut(s)	27, 102, 305, 994
Hpy188III	TCNNGA	5 cut(s)	112, 151, 739, 813, 865
Hpy8I	GTNNAC	3 cut(s)	564, 778, 967
HpyAV	CCTTC	2 cut(s)	54, 688
HpyCH4III	ACNGT	6 cut(s)	244, 404, 465, 628, 782, 892
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	368, 909, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	730, 937
HpyF3I	CTNAG	5 cut(s)	89, 558, 640, 720, 986
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	133, 154, 856, 923
Ksp22I	TGATCA	1 cut(s)	861
KspAI	GTTAAC	1 cut(s)	967
Kzo9I	GATC	2 cut(s)	716, 861
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	3 cut(s)	103, 755, 843
LpnPI	CCDG	6 cut(s)	188, 375, 515, 752, 798, 850
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	4 cut(s)	320, 383, 500, 689
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	4 cut(s)	244, 394, 469, 973
MalI	GATC	2 cut(s)	718, 863
MboI	GATC	2 cut(s)	716, 861
MboII	GAAGA	4 cut(s)	40, 214, 799, 938
MflI	RGATCY	1 cut(s)	716
MluCI	AATT	7 cut(s)	84, 266, 294, 449, 594, 792, 828
MlyI	GAGTC	2 cut(s)	2, 910
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	4 cut(s)	338, 593, 845, 966
MslI	CAYNNNNRTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	758
MwoI	GCNNNNNNNGC	2 cut(s)	730, 937
NdeII	GATC	2 cut(s)	716, 861
NlaIII	CATG	4 cut(s)	133, 154, 856, 923
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	3 cut(s)	244, 469, 973
PagI	TCATGA	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	921
PctI	GAATGC	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	2 cut(s)	2, 910
PpsI	GAGTC	2 cut(s)	2, 910
PshBI	ATTAAT	1 cut(s)	593
PsiI	TTATAA	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	2 cut(s)	606, 660
RsaNI	GTAC	2 cut(s)	605, 659
RseI	CAYNNNNRTG	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	4 cut(s)	338, 593, 845, 966
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	2 cut(s)	716, 861
ScaI	AGTACT	1 cut(s)	660
SchI	GAGTC	2 cut(s)	2, 910
SfaNI	GCATC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	112, 662
SmoI	CTYRAG	2 cut(s)	112, 662
Sse9I	AATT	7 cut(s)	84, 266, 294, 449, 594, 792, 828
SspI	AATATT	2 cut(s)	745, 956
SspMI	CTAG	4 cut(s)	320, 383, 500, 689
TaaI	ACNGT	6 cut(s)	244, 404, 465, 628, 782, 892
TaiI	ACGT	1 cut(s)	344
TasI	AATT	7 cut(s)	84, 266, 294, 449, 594, 792, 828
TatI	WGTACW	2 cut(s)	604, 658
Tru1I	TTAA	4 cut(s)	338, 593, 845, 966
Tru9I	TTAA	4 cut(s)	338, 593, 845, 966
TscAI	CASTG	2 cut(s)	57, 217
TseFI	GTSAC	3 cut(s)	244, 469, 973
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	3 cut(s)	244, 469, 973
TspDTI	ATGAA	4 cut(s)	197, 208, 322, 485
TspRI	CASTG	2 cut(s)	57, 217
VspI	ATTAAT	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	862
XapI	RAATTY	2 cut(s)	84, 266
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	4 cut(s)	320, 383, 500, 689
ZrmI	AGTACT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.