Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

42488191 .. 42489181

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008906

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATGATGGACTCAAATACTAAACCTCTGAAGAATAGCAGTCCTCCTTCCGCACTGAAGTTTTATGAGCTTTTGGGTTTGGTGGGAATTCTAAGGGGAGCTCCGAAAACTCATGCAAGCTTTCTAACCCTGACAGACAAGCATAGCCCCGAATTTGCCGACCTTATAACTTCTTTGAAAATTGACCTCCGATTAGTTGTGGGACTAGAGGGGATTTTCATTTTAGCATTCTCCTTTACCACGCTATTTTTTGCAACCTCATCAATCTTAGCATCAGGGGTAACATACTGTGGTAAAAACTTATCTGTCAAGGAACTCCTATCAAGGGTAGTGAAATTGTTGAAAAGACCTCCTAAGTTCACACTTTCGGGTTTCTCTATAATCGTATTAATTGTAGCTGTACTTTTCCAAGCTTATCTTACTGTTGTTTGGAACTTAGCACTCATTGTTTCAGTACTTGAGGAAAAATCGGGCATTGAGGCACTAGGGAAGGCAGAACAGCTTATCAAAGGATCTAAGCTACGAGGGCTTTTCCTGAATATTCATTTCGGAGCATTCTCTGTTGCTGTGGTCTACGGTTTGAAGAAAATTGGCAATATAGCATTTTCAGGAAGTCAAATAGTAATTCCATTGCTCCTCTTAAACTCCATGTCCTTGATCAGGATGTTTTCACTAATGGCATATACAGTCCTTTACTATGAGTGCAAGGAGACTCATGGAGAAGAGCTTGAAATGCAAGGAGGCGTTGAATATGCTAAAGTTAACGCGGTCACCGCACTTCTCAGTTCAGATGAAGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

29.17

Weight (kDa)

8.85

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	767
AciI	CCGC	3 cut(s)	51, 767, 774
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	87, 152
AcuI	CTGAAG	2 cut(s)	50, 77
AfaI	GTAC	2 cut(s)	402, 456
AfiI	CCNNNNNNNGG	2 cut(s)	325, 660
AgsI	TTSAA	5 cut(s)	178, 343, 583, 731, 749
AluBI	AGCT	8 cut(s)	70, 101, 120, 398, 413, 502, 520, 727
AluI	AGCT	8 cut(s)	70, 101, 120, 398, 413, 502, 520, 727
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	520
ApoI	RAATTY	2 cut(s)	87, 152
AseI	ATTAAT	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	206, 485
BmcAI	AGTACT	1 cut(s)	456
BmsI	GCATC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 660
Bse3DI	GCAATG	1 cut(s)	629
BseGI	GGATG	1 cut(s)	669
BseLI	CCNNNNNNNGG	2 cut(s)	325, 660
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	1 cut(s)	796
BseRI	GAGGAG	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	767
BsiHKAI	GWGCWC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	325, 660
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	227, 554
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	512, 657
BspACI	CCGC	3 cut(s)	51, 767, 774
BspCNI	CTCAG	1 cut(s)	795
BspFNI	CGCG	1 cut(s)	767
BspPI	GGATC	1 cut(s)	520
BspQI	GCTCTTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	629
BssMI	GATC	2 cut(s)	512, 657
Bst4CI	ACNGT	4 cut(s)	290, 424, 578, 688
Bst6I	CTCTTC	1 cut(s)	717
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	6 cut(s)	92, 268, 354, 436, 516, 782
BstEII	GGTNACC	1 cut(s)	769
BstENI	CCTNNNNNAGG	1 cut(s)	658
BstF5I	GGATG	1 cut(s)	669
BstFNI	CGCG	1 cut(s)	767
BstKTI	GATC	2 cut(s)	515, 660
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	2 cut(s)	512, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	526, 733, 773
BstPI	GGTNACC	1 cut(s)	769
BstUI	CGCG	1 cut(s)	767
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	669
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	401, 455
CviAII	CATG	3 cut(s)	113, 649, 716
CviQI	GTAC	2 cut(s)	401, 455
DdeI	CTNAG	6 cut(s)	92, 268, 354, 436, 516, 782
DpnI	GATC	2 cut(s)	514, 659
DpnII	GATC	2 cut(s)	512, 657
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	50, 77
Eco91I	GGTNACC	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	769
EcoRI	GAATTC	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	3 cut(s)	116, 652, 719
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	3 cut(s)	112, 648, 715
FbaI	TGATCA	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	573
FokI	GGATG	1 cut(s)	676
FriOI	GRGCYC	1 cut(s)	103
FspBI	CTAG	2 cut(s)	206, 485
Hin1II	CATG	3 cut(s)	116, 652, 719
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	2 cut(s)	118, 411
HinfI	GANTC	2 cut(s)	11, 712
HpaI	GTTAAC	1 cut(s)	763
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	3 cut(s)	360, 574, 763
Hpy188I	TCNGA	5 cut(s)	30, 105, 191, 551, 790
Hpy188III	TCNNGA	3 cut(s)	535, 609, 661
Hpy8I	GTNNAC	3 cut(s)	360, 574, 763
HpyAV	CCTTC	2 cut(s)	57, 484
HpyCH4III	ACNGT	4 cut(s)	290, 424, 578, 688
HpyCH4V	TGCA	4 cut(s)	116, 254, 705, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	526, 733, 773
HpyF3I	CTNAG	6 cut(s)	92, 268, 354, 436, 516, 782
Hsp92II	CATG	3 cut(s)	116, 652, 719
Ksp22I	TGATCA	1 cut(s)	657
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	512, 657
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	4 cut(s)	98, 106, 551, 639
LpnPI	CCDG	5 cut(s)	143, 261, 548, 594, 646
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	206, 485
MaeIII	GTNAC	2 cut(s)	280, 769
MalI	GATC	2 cut(s)	514, 659
MboI	GATC	2 cut(s)	512, 657
MboII	GAAGA	3 cut(s)	43, 595, 734
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	7 cut(s)	87, 152, 180, 335, 390, 588, 624
MlyI	GAGTC	2 cut(s)	5, 706
MseI	TTAA	3 cut(s)	389, 641, 762
Mva1269I	GAATGC	2 cut(s)	227, 554
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	3 cut(s)	526, 733, 773
NdeII	GATC	2 cut(s)	512, 657
NlaIII	CATG	3 cut(s)	116, 652, 719
NmuCI	GTSAC	1 cut(s)	769
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	2 cut(s)	227, 554
PleI	GAGTC	2 cut(s)	5, 706
PpsI	GAGTC	2 cut(s)	5, 706
PshBI	ATTAAT	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	2 cut(s)	402, 456
RsaNI	GTAC	2 cut(s)	401, 455
SacI	GAGCTC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	389, 641, 762
Sau3AI	GATC	2 cut(s)	512, 657
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	2 cut(s)	5, 706
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	7 cut(s)	87, 152, 180, 335, 390, 588, 624
SsiI	CCGC	3 cut(s)	51, 767, 774
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	2 cut(s)	206, 485
SstI	GAGCTC	1 cut(s)	103
TaaI	ACNGT	4 cut(s)	290, 424, 578, 688
TasI	AATT	7 cut(s)	87, 152, 180, 335, 390, 588, 624
TatI	WGTACW	2 cut(s)	400, 454
Tru1I	TTAA	3 cut(s)	389, 641, 762
Tru9I	TTAA	3 cut(s)	389, 641, 762
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	769
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	2 cut(s)	208, 533
TspRI	CASTG	1 cut(s)	60
VspI	ATTAAT	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	658
XapI	RAATTY	2 cut(s)	87, 152
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	2 cut(s)	206, 485
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.