Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

21409592 .. 21410602

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATGATGGACTCAAATACTAAACCTCTGAAGAATAGCAGTCCTCCTTCCCCACTGAAGTTTTATGAGCTTTTGGGTTTCGTGGGAATTCTAAGGGAAGCTCCGAAACTTTTCTTGAGAAATGGGAAACTCATGTCCTCTATCACCATACTCATGATTTGTTTTAGTTCTGTCCTCCTGTTGATGAATATCATCTCAATCAAACCATCAATCACTGACTTCATCTTCAAGGCAAGCTTTCTAACCCTGACAGACAAGAGTAGCCCCGAATTTGCCACCCTTATAACTTCTTTGAAAATTGACCTCCGGTTAGTTGTGGAACTAGAGGGGATTTTCATTTTAGCATTCTCCTTTACCTCACTATTTTTTGCAACCTCATCAATCTTAGCATCAGGGGTAGCATACTGTGGTAAAAACTTATCTGTCAAGGAACTCCTATCAAGGGTAGTGAAATTGTTGAAAAGACCATTTGTCACTTGGTTTTACCTAATGCTGCTTCATCTAGGCTATTGTCTATTTCTTACAGCATTTCTGGTTCCTTTGGTTGTGCTTTTCAGTCCTAAGTTCACACTTTCGGGTTTCTCTATAATCATATTGATTGTAGCTGTACTTTTCCAAGCTTATCTTGCTGTTGTTTGGAACTTAGCACTCATTGTTTCAGTACTTGAGGAAAAATGGGGCATTGAGGCACTAGGGAAGGCAGAACAGCTTATCAAAGGATCTAAGCTACGAGGGCTTTTCCTGAATATTCTTTTTGGAGCATTCTCTGTTGCTGTGGTCTACGGTTTAAAGAAAATTGGCAATATAGCATTTTCAGGAAGTCAAATAGTAATTCCATTGCTCCTCTTGAACTCCATGACCTTGATCAGGATGTTTTCACTAATGGCATATACAGTCCTTTACTATGAGTGCAAGGAGACTCATGGAGAAGAGCTTGAAATGGAAGGAGGCGTTGAATGTACTAAAGTTACCGCGGTCACCCCACTTCTCAGTTCAGATGAAGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

37.28

Weight (kDa)

8.78

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	1 cut(s)	974
AciI	CCGC	2 cut(s)	972, 974
AclWI	GGATC	1 cut(s)	727
AcsI	RAATTY	2 cut(s)	87, 269
AcuI	CTGAAG	2 cut(s)	50, 77
AfaI	GTAC	3 cut(s)	609, 663, 961
AfiI	CCNNNNNNNGG	2 cut(s)	442, 867
AgsI	TTSAA	6 cut(s)	229, 295, 460, 850, 938, 956
AhdI	GACNNNNNGTC	1 cut(s)	470
AluBI	AGCT	8 cut(s)	70, 101, 237, 605, 620, 709, 727, 934
AluI	AGCT	8 cut(s)	70, 101, 237, 605, 620, 709, 727, 934
Alw26I	GTCTC	1 cut(s)	911
AlwI	GGATC	1 cut(s)	727
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	87, 269
Asp700I	GAANNNNTTC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	136, 970
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	864
BcoDI	GTCTC	1 cut(s)	911
BfaI	CTAG	3 cut(s)	323, 503, 692
BisI	GCNGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	495
BmcAI	AGTACT	1 cut(s)	663
BmeRI	GACNNNNNGTC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	1 cut(s)	398
BpuEI	CTTGAG	2 cut(s)	136, 686
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	972
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 867
Bse3DI	GCAATG	1 cut(s)	836
Bse8I	GATNNNNATC	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	972
BseGI	GGATG	1 cut(s)	876
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	442, 867
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	1003
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	974
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	442, 867
BsmAI	GTCTC	1 cut(s)	911
BsmI	GAATGC	2 cut(s)	344, 761
Bsp143I	GATC	2 cut(s)	719, 864
BspACI	CCGC	2 cut(s)	972, 974
BspCNI	CTCAG	1 cut(s)	1002
BspFNI	CGCG	1 cut(s)	974
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	727
BspQI	GCTCTTC	1 cut(s)	924
BsrDI	GCAATG	1 cut(s)	836
BssECI	CCNNGG	1 cut(s)	972
BssMI	GATC	2 cut(s)	719, 864
Bst4CI	ACNGT	3 cut(s)	407, 785, 895
Bst6I	CTCTTC	1 cut(s)	924
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	6 cut(s)	92, 385, 561, 643, 723, 989
BstDSI	CCRYGG	1 cut(s)	972
BstEII	GGTNACC	1 cut(s)	976
BstENI	CCTNNNNNAGG	1 cut(s)	865
BstF5I	GGATG	1 cut(s)	876
BstFNI	CGCG	1 cut(s)	974
BstKTI	GATC	2 cut(s)	722, 867
BstMAI	GTCTC	1 cut(s)	911
BstMBI	GATC	2 cut(s)	719, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 733
BstPI	GGTNACC	1 cut(s)	976
BstUI	CGCG	1 cut(s)	974
BstV1I	GCAGC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BtgI	CCRYGG	1 cut(s)	972
BtsCI	GGATG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	53, 213
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	153
Cfr42I	CCGCGG	1 cut(s)	975
Csp6I	GTAC	3 cut(s)	608, 662, 960
CviAII	CATG	4 cut(s)	133, 154, 856, 923
CviQI	GTAC	3 cut(s)	608, 662, 960
DdeI	CTNAG	6 cut(s)	92, 385, 561, 643, 723, 989
DpnI	GATC	2 cut(s)	721, 866
DpnII	GATC	2 cut(s)	719, 864
DraI	TTTAAA	1 cut(s)	789
DriI	GACNNNNNGTC	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	924
Eam1105I	GACNNNNNGTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	924
Eco57I	CTGAAG	2 cut(s)	50, 77
Eco91I	GGTNACC	1 cut(s)	976
EcoNI	CCTNNNNNAGG	1 cut(s)	865
EcoO65I	GGTNACC	1 cut(s)	976
EcoRI	GAATTC	1 cut(s)	87
FaeI	CATG	4 cut(s)	136, 157, 859, 926
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 609, 641
FatI	CATG	4 cut(s)	132, 153, 855, 922
FbaI	TGATCA	1 cut(s)	864
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	1 cut(s)	494
FokI	GGATG	1 cut(s)	883
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	3 cut(s)	323, 503, 692
GluI	GCNGC	1 cut(s)	494
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	4 cut(s)	136, 157, 859, 926
HindIII	AAGCTT	2 cut(s)	235, 618
HinfI	GANTC	2 cut(s)	11, 919
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	136, 970
Hpy166II	GTNNAC	2 cut(s)	567, 781
Hpy188I	TCNGA	3 cut(s)	30, 105, 997
Hpy188III	TCNNGA	6 cut(s)	115, 154, 742, 816, 847, 868
Hpy8I	GTNNAC	2 cut(s)	567, 781
HpyAV	CCTTC	3 cut(s)	57, 691, 938
HpyCH4III	ACNGT	3 cut(s)	407, 785, 895
HpyCH4V	TGCA	2 cut(s)	371, 912
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 733
HpyF3I	CTNAG	6 cut(s)	92, 385, 561, 643, 723, 989
Hsp92II	CATG	4 cut(s)	136, 157, 859, 926
Ksp22I	TGATCA	1 cut(s)	864
KspI	CCGCGG	1 cut(s)	975
Kzo9I	GATC	2 cut(s)	719, 864
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	3 cut(s)	106, 758, 846
LpnPI	CCDG	8 cut(s)	191, 260, 320, 378, 518, 755, 801, 853
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	3 cut(s)	323, 503, 692
MaeIII	GTNAC	3 cut(s)	472, 967, 976
MalI	GATC	2 cut(s)	721, 866
MboI	GATC	2 cut(s)	719, 864
MboII	GAAGA	3 cut(s)	43, 217, 941
MflI	RGATCY	1 cut(s)	719
MluCI	AATT	6 cut(s)	87, 269, 297, 452, 795, 831
MlyI	GAGTC	2 cut(s)	5, 913
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	788
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	1 cut(s)	307
Mva1269I	GAATGC	2 cut(s)	344, 761
MvnI	CGCG	1 cut(s)	974
MwoI	GCNNNNNNNGC	2 cut(s)	626, 733
NdeII	GATC	2 cut(s)	719, 864
NlaIII	CATG	4 cut(s)	136, 157, 859, 926
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	2 cut(s)	472, 976
PagI	TCATGA	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	924
PctI	GAATGC	2 cut(s)	344, 761
PdmI	GAANNNNTTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	495
PleI	GAGTC	2 cut(s)	5, 913
PpsI	GAGTC	2 cut(s)	5, 913
PsiI	TTATAA	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	976
PspN4I	GGNNCC	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	3 cut(s)	609, 663, 961
RsaNI	GTAC	3 cut(s)	608, 662, 960
RseI	CAYNNNNRTG	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	975
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	1 cut(s)	788
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	719, 864
ScaI	AGTACT	1 cut(s)	663
SchI	GAGTC	2 cut(s)	5, 913
SfaNI	GCATC	1 cut(s)	398
Sfr303I	CCGCGG	1 cut(s)	975
SgrBI	CCGCGG	1 cut(s)	975
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	115, 665
SmoI	CTYRAG	2 cut(s)	115, 665
Sse9I	AATT	6 cut(s)	87, 269, 297, 452, 795, 831
SsiI	CCGC	2 cut(s)	972, 974
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	323, 503, 692
TaaI	ACNGT	3 cut(s)	407, 785, 895
TasI	AATT	6 cut(s)	87, 269, 297, 452, 795, 831
TatI	WGTACW	3 cut(s)	607, 661, 959
Tru1I	TTAA	1 cut(s)	788
Tru9I	TTAA	1 cut(s)	788
TscAI	CASTG	2 cut(s)	60, 220
TseFI	GTSAC	2 cut(s)	472, 976
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	2 cut(s)	472, 976
TspDTI	ATGAA	4 cut(s)	200, 211, 325, 488
TspRI	CASTG	2 cut(s)	60, 220
XagI	CCTNNNNNAGG	1 cut(s)	865
XapI	RAATTY	2 cut(s)	87, 269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	3 cut(s)	323, 503, 692
ZrmI	AGTACT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.