Rh5CG457500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002107
Physical Location & Seq
Forward (+)
63532097 .. 63533159
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG457500.1

Sequence Viewer

Length: 321 bp
ATGGAGGCACTGGGAAAAGCTGGACAGCTTATTAAGGGATCAAAAATTTTTCTGAATGTTGTTATAGCCACCTCCTTGTGGTTGTTATTTGTTTTGTACAGGATTGTCGCTAAAGCTATACCAGTAAAAGCAGTGATAATTCCATTGCTCCTCTTAAATTGTATCAGCTGCCTCATAGCTATGGTTTCGCGAATGGCATACACAGTCCTGTACTATGAGTCCAAGGCGACTCATGGTGAAGAGCTTGAACGTACTGCAAGGAAGCTTGGACATGCTAAGGTTACCTCTGATACCCCTCTTATCAATGTAGATGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

9.43

Isoelectric Point (pI)

13.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 190
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 45
AfaI GTAC 3 cut(s) 98, 212, 253
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 7 cut(s) 20, 28, 116, 168, 179, 244, 265
AluI AGCT 7 cut(s) 20, 28, 116, 168, 179, 244, 265
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 248
BbvI GCAGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 15, 122
Bse3DI GCAATG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 15, 122
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 38
Bsp68I TCGCGA 1 cut(s) 190
BspFNI CGCG 1 cut(s) 190
BspPI GGATC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 2 cut(s) 15, 122
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 276
BstEII GGTNACC 1 cut(s) 280
BstFNI CGCG 1 cut(s) 190
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 280
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 8, 138
BtuMI TCGCGA 1 cut(s) 190
Csp6I GTAC 3 cut(s) 97, 211, 252
CviAII CATG 2 cut(s) 233, 272
CviJI RGCY 8 cut(s) 20, 28, 68, 116, 168, 179, 244, 265
CviKI_1 RGCY 8 cut(s) 20, 28, 68, 116, 168, 179, 244, 265
CviQI GTAC 3 cut(s) 97, 211, 252
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 236, 275
FaiI YATR 8 cut(s) 65, 119, 176, 182, 199, 216, 234, 273
FatI CATG 2 cut(s) 232, 271
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
Hin1II CATG 2 cut(s) 236, 275
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 2 cut(s) 218, 229
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 54, 289
Hpy188III TCNNGA 1 cut(s) 189
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 257, 314
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 236, 275
Kzo9I GATC 1 cut(s) 38
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 6, 85, 135, 221
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 301
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 251
MluCI AATT 4 cut(s) 45, 138, 157, 315
MlyI GAGTC 2 cut(s) 223, 227
MnlI CCTC 5 cut(s) 82, 161, 182, 295, 306
MseI TTAA 2 cut(s) 33, 155
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 168
MvnI CGCG 1 cut(s) 190
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 236, 275
NruI TCGCGA 1 cut(s) 190
NspI RCATGY 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 2 cut(s) 223, 226
PpsI GAGTC 2 cut(s) 223, 226
PspEI GGTNACC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 168
RruI TCGCGA 1 cut(s) 190
RsaI GTAC 3 cut(s) 98, 212, 253
RsaNI GTAC 3 cut(s) 97, 211, 252
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 33, 155
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 38
SchI GAGTC 2 cut(s) 223, 227
SfaNI GCATC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 4 cut(s) 45, 138, 157, 315
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 253
TasI AATT 4 cut(s) 45, 138, 157, 315
TatI WGTACW 2 cut(s) 96, 210
Tru1I TTAA 2 cut(s) 33, 155
Tru9I TTAA 2 cut(s) 33, 155
TscAI CASTG 2 cut(s) 15, 138
TseI GCWGC 1 cut(s) 168
TspRI CASTG 2 cut(s) 15, 138
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.