Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

69329621 .. 69330567

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTTTTAAATTTTTTGGGACTCCTAAGGAAATCCCACAAACTTTTCTTCAGAAATGGGAAGGCCGTGTCCTCCATCACCCTTCTCATAATACTCGTTAGGTCTTTCCTCTTGGTGATTAATTTCTACACCCTCAAACCAATAATCACTGGTTTTGCAATCAAGGCACGCTTCCTGGCAACTACGAGTCCCAGAGGCGCTGAATTCGCAGATCTTGTAACTGCTGCCAAGTACGAGTTCGGATTATTTCTTGGACTAGAATGGATTTTCATTTTGGGGTTGTCTTTTACCTCATTGTTTTTTGCAACAGTCTCAGTCTTAGCATCAGCAGTATCATACTTCATTGAAAAGACCATTTGTACATGGTTTTACATAACACTGCTTGATCTAGGTTATTTTTCATTTCTCTTTGCCTCTGTTCTTCCTTTAGTGCTGATTTTCAATCTTCAGCTCACCATCTCTGCTTTTGCTATAGTCGCATGCATTCTAGCTCTAGTTGTTCAGACTTATCTAGCTGTAGTGTGGAACTTGGCACTTGTTGTTTCGGTACTAGAAGAAAAATGTGGCATGGAGGCACTGGGAAAAGCTGGACAGCTTATTAAGGGATCAAAGCTACGAGGATTTTTTCTGAATGTTGTTATAGCCACCTCCTTGTGGTTGTTATTTGTTTTGTACAGGATTGTCGCTAAAGCTATACCAGTAAAAGCAGTGATAATTCCATTGCTCCTCTTAAATTGTATCCGCTGCCTCATAGCTATGGTTTCGCGAATGGCATACACAGTCCTGTACTATGAGTCCAAGGCGACTCATGGTGATGAAGAGCTTGAACGTACTGCAAGGAAGCTTGGACATGCTAAGGTTACCTCTGATACCCCTCTTATCAATGCAGATGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

33.17

Weight (kDa)

9.49

Isoelectric Point (pI)

21.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	766
AciI	CCGC	1 cut(s)	742
AclWI	GGATC	1 cut(s)	613
AcsI	RAATTY	2 cut(s)	10, 203
AcuI	CTGAAG	2 cut(s)	34, 431
AfaI	GTAC	6 cut(s)	233, 361, 549, 674, 788, 832
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	3 cut(s)	347, 442, 827
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	224, 744
ApoI	RAATTY	2 cut(s)	10, 203
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	70, 127, 445, 824
AxyI	CCTNAGG	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	211, 731
BccI	CCATC	2 cut(s)	83, 464
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	749
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	6 cut(s)	257, 389, 488, 494, 512, 551
BfmI	CTRYAG	2 cut(s)	471, 516
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	749
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	2 cut(s)	225, 745
BlsI	GCNGC	2 cut(s)	226, 746
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	2 cut(s)	332, 880
BmuI	ACTGGG	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	855
BsaJI	CCNNGG	1 cut(s)	798
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	3 cut(s)	154, 582, 698
Bse21I	CCTNAGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	798
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	3 cut(s)	154, 582, 698
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	2 cut(s)	211, 731
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	1 cut(s)	65
BslFI	GGGAC	2 cut(s)	33, 174
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	33, 174
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	65
Bsp1407I	TGTACA	2 cut(s)	359, 672
Bsp143I	GATC	3 cut(s)	211, 385, 605
Bsp68I	TCGCGA	1 cut(s)	766
BspACI	CCGC	1 cut(s)	742
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	613
BspQI	GCTCTTC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	719
BsrGI	TGTACA	2 cut(s)	359, 672
BsrI	ACTGG	3 cut(s)	154, 582, 698
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	3 cut(s)	211, 385, 605
BssT1I	CCWWGG	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	310, 781
Bst6I	CTCTTC	1 cut(s)	813
BstAUI	TGTACA	2 cut(s)	359, 672
BstC8I	GCNNGC	2 cut(s)	169, 481
BstDEI	CTNAG	4 cut(s)	26, 313, 319, 855
BstEII	GGTNACC	1 cut(s)	859
BstFNI	CGCG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	214, 388, 608
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	3 cut(s)	211, 385, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 206, 476
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	483, 854
BstPI	GGTNACC	1 cut(s)	859
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	2 cut(s)	471, 516
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	2 cut(s)	211, 731
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	65
BtsI	GCAGTG	2 cut(s)	377, 714
BtsIMutI	CAGTG	4 cut(s)	147, 377, 575, 714
BtuMI	TCGCGA	1 cut(s)	766
Cac8I	GCNNGC	2 cut(s)	169, 481
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	6 cut(s)	232, 360, 548, 673, 787, 831
CviAII	CATG	5 cut(s)	363, 480, 568, 809, 851
CviQI	GTAC	6 cut(s)	232, 360, 548, 673, 787, 831
DdeI	CTNAG	4 cut(s)	26, 313, 319, 855
DpnI	GATC	3 cut(s)	213, 387, 607
DpnII	GATC	3 cut(s)	211, 385, 605
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	798
Eco57I	CTGAAG	2 cut(s)	34, 431
Eco81I	CCTNAGG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	859
EcoO65I	GGTNACC	1 cut(s)	859
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	798
EcoT22I	ATGCAT	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	798
FaeI	CATG	5 cut(s)	366, 483, 571, 812, 854
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	2 cut(s)	33, 174
FatI	CATG	5 cut(s)	362, 479, 567, 808, 850
Fnu4HI	GCNGC	2 cut(s)	225, 745
Fsp4HI	GCNGC	2 cut(s)	225, 745
FspBI	CTAG	6 cut(s)	257, 389, 488, 494, 512, 551
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	225, 745
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	366, 483, 571, 812, 854
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	4 cut(s)	21, 187, 794, 805
HphI	GGTGA	4 cut(s)	70, 127, 445, 824
Hpy188I	TCNGA	5 cut(s)	53, 242, 504, 630, 868
Hpy188III	TCNNGA	1 cut(s)	765
HpyAV	CCTTC	2 cut(s)	55, 92
HpyCH4III	ACNGT	2 cut(s)	310, 781
HpyCH4IV	ACGT	1 cut(s)	829
HpyCH4V	TGCA	6 cut(s)	158, 305, 483, 836, 887, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 206, 476
HpyF3I	CTNAG	4 cut(s)	26, 313, 319, 855
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	5 cut(s)	366, 483, 571, 812, 854
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	211, 385, 605
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	1 cut(s)	729
LpnPI	CCDG	9 cut(s)	135, 161, 188, 205, 563, 573, 661, 711, 797
Lsp1109I	GCAGC	2 cut(s)	211, 731
LweI	GCATC	2 cut(s)	332, 880
MaeI	CTAG	6 cut(s)	257, 389, 488, 494, 512, 551
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	2 cut(s)	217, 859
MalI	GATC	3 cut(s)	213, 387, 607
MboI	GATC	3 cut(s)	211, 385, 605
MboII	GAAGA	5 cut(s)	40, 413, 437, 566, 830
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	6 cut(s)	10, 121, 203, 714, 733, 894
MlyI	GAGTC	4 cut(s)	15, 196, 799, 803
Mph1103I	ATGCAT	1 cut(s)	485
MseI	TTAA	4 cut(s)	8, 120, 600, 731
MslI	CAYNNNNRTG	2 cut(s)	755, 813
MspA1I	CMGCKG	1 cut(s)	744
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	766
MwoI	GCNNNNNNNGC	3 cut(s)	164, 206, 476
NdeII	GATC	3 cut(s)	211, 385, 605
NlaIII	CATG	5 cut(s)	366, 483, 571, 812, 854
NruI	TCGCGA	1 cut(s)	766
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	2 cut(s)	483, 854
PaeI	GCATGC	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	813
PctI	GAATGC	1 cut(s)	483
PkrI	GCNGC	2 cut(s)	226, 746
PleI	GAGTC	4 cut(s)	15, 195, 799, 802
PpsI	GAGTC	4 cut(s)	15, 195, 799, 802
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	859
PspGI	CCWGG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	211
RruI	TCGCGA	1 cut(s)	766
RsaI	GTAC	6 cut(s)	233, 361, 549, 674, 788, 832
RsaNI	GTAC	6 cut(s)	232, 360, 548, 673, 787, 831
RseI	CAYNNNNRTG	2 cut(s)	755, 813
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	4 cut(s)	8, 120, 600, 731
SatI	GCNGC	2 cut(s)	225, 745
Sau3AI	GATC	3 cut(s)	211, 385, 605
SchI	GAGTC	4 cut(s)	15, 196, 799, 803
ScrFI	CCNGG	1 cut(s)	176
SfaNI	GCATC	2 cut(s)	332, 880
SfcI	CTRYAG	2 cut(s)	471, 516
SmiMI	CAYNNNNRTG	2 cut(s)	755, 813
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	6 cut(s)	10, 121, 203, 714, 733, 894
SsiI	CCGC	1 cut(s)	742
SspMI	CTAG	6 cut(s)	257, 389, 488, 494, 512, 551
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	2 cut(s)	310, 781
TaiI	ACGT	1 cut(s)	832
TasI	AATT	6 cut(s)	10, 121, 203, 714, 733, 894
TatI	WGTACW	3 cut(s)	359, 672, 786
Tru1I	TTAA	4 cut(s)	8, 120, 600, 731
Tru9I	TTAA	4 cut(s)	8, 120, 600, 731
TscAI	CASTG	4 cut(s)	154, 384, 582, 714
TseI	GCWGC	2 cut(s)	224, 744
TspDTI	ATGAA	4 cut(s)	259, 331, 390, 831
TspRI	CASTG	4 cut(s)	154, 384, 582, 714
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	2 cut(s)	10, 203
XceI	RCATGY	2 cut(s)	483, 854
XspI	CTAG	6 cut(s)	257, 389, 488, 494, 512, 551
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.