Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Forward (+)

32989353 .. 32990315

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1263500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAATTTTATATGCTTTTGGATTTCGTGGGAATTCTAAGAGAAACCCTCAAACTTTTCTTGAAAAATGTGAAGCTCATGTCCTGCATCATCTTACTCATAATTTCCCTTAGCTCTATCCTCTTGGTGAGCAATATGTACTCCATCAAACTATCGCTCATTGATTTCACCCTCAATGCAGCCCTCCTACCTTCTACGGTCGCGGGTACCCCCGACTTCAACCACCTTTTGGTTACTTTGAAAGAGGACCTCCGGTTATTTGCAGGACTTGAGTGGCTTTTCATTTCCGCTTCCTGTTTTGCCTCATTATTCTTTACAACAGCTTCAATTTTAGCATCAGGGGTCACTTATCGCGGTCAAGACTTGTCTGTCAAGGAACTACTATCAAGGGCCGTGAAATCGTTGAAAAGACCATTTGTTACTTGGTTTTACATAGCCCTACTTGATTTAGGCTTTTATCTATTTATTATAGTCTTTCTGCTTCCCTTGTTGCTGACTTTTGGTCTTACATATACTACGCCTGCTTTCTCCAAAACCGTATTTCTTTTAGCTTTGGTTTTCCAGGCCTATCTAGCTGTTGTTTGGAATTTAGCACTCGTTGTTTCAGTACTCGAAGAAAAAAGTGGCATCGAGGCACTAGGGAAGGCTGGACAGCTTATAAAAGGATCTACGCTACGAGGATTTTTCCTAAATCTTTTGTCCGGAGCATTCTCTCTTTTGGTCTTCTATGGTTGGCACAAGACTGGGACAACAGTCAAGTCACTAAATGCGGCAATGATTCCATTGCTCCTCATGAATCTTATATCCTGCTTCATCAGGATGTCCATGCTGATGATTTATACTGTCCTTTACCATAAGTGTAAGGAGACTCATGGAGAAGAGCTTGAAATGCAAGGAAGCACCGAATATACGAAAGTGGCCACATCTGCATCTACCCCTTTTATCAGTGCAGATGTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

35.57

Weight (kDa)

9.05

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AasI	GACNNNNNNGTC	1 cut(s)	368
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	2 cut(s)	203, 354
AccIII	TCCGGA	1 cut(s)	701
AciI	CCGC	4 cut(s)	203, 288, 354, 770
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	1 cut(s)	918
AcsI	RAATTY	3 cut(s)	5, 33, 586
AfaI	GTAC	3 cut(s)	140, 208, 609
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	6 cut(s)	64, 220, 241, 327, 406, 887
AhdI	GACNNNNNGTC	1 cut(s)	501
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	7 cut(s)	76, 114, 323, 551, 575, 655, 883
AluI	AGCT	7 cut(s)	76, 114, 323, 551, 575, 655, 883
Alw26I	GTCTC	1 cut(s)	860
AlwI	GGATC	1 cut(s)	673
Aor13HI	TCCGGA	1 cut(s)	701
AoxI	GGCC	3 cut(s)	390, 564, 918
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	3 cut(s)	5, 33, 586
Asp718I	GGTACC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	247, 390
AsuHPI	GGTGA	2 cut(s)	139, 160
AvaII	GGWCC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	920
BanI	GGYRCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	715
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	860
BfaI	CTAG	2 cut(s)	572, 638
BisI	GCNGC	2 cut(s)	180, 771
BlsI	GCNGC	2 cut(s)	181, 772
BmcAI	AGTACT	1 cut(s)	609
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	247
BmeRI	GACNNNNNGTC	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	247, 390
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	563
BmrI	ACTGGG	1 cut(s)	753
BmsI	GCATC	4 cut(s)	96, 344, 636, 938
BmuI	ACTGGG	1 cut(s)	753
BoxI	GACNNNNGTC	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	715
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	290
BsaWI	WCCGGW	2 cut(s)	252, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	2 cut(s)	780, 782
BseAI	TCCGGA	1 cut(s)	701
BseBI	CCWGG	1 cut(s)	563
BseGI	GGATG	1 cut(s)	825
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	780, 782
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	203, 354
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	392, 566, 920
BshNI	GGYRCC	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	253, 702
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	860
BsmFI	GGGAC	1 cut(s)	760
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	3 cut(s)	392, 566, 920
Bsp13I	TCCGGA	1 cut(s)	701
Bsp143I	GATC	1 cut(s)	665
BspACI	CCGC	4 cut(s)	203, 288, 354, 770
BspANI	GGCC	3 cut(s)	392, 566, 920
BspEI	TCCGGA	1 cut(s)	701
BspFNI	CGCG	2 cut(s)	203, 354
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	673
BspQI	GCTCTTC	1 cut(s)	873
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	780, 782
BsrI	ACTGG	1 cut(s)	748
BssMI	GATC	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	4 cut(s)	199, 538, 754, 844
Bst6I	CTCTTC	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	38, 110
BstF5I	GGATG	1 cut(s)	825
BstFNI	CGCG	2 cut(s)	203, 354
BstKTI	GATC	1 cut(s)	668
BstMAI	GTCTC	1 cut(s)	860
BstMBI	GATC	1 cut(s)	665
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 889, 926, 956
BstNI	CCWGG	1 cut(s)	563
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	561
BstUI	CGCG	2 cut(s)	203, 354
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	392, 566, 920
BtsCI	GGATG	1 cut(s)	825
BtsIMutI	CAGTG	1 cut(s)	952
Cac8I	GCNNGC	1 cut(s)	522
CciI	TCATGA	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	247, 390
Csp6I	GTAC	3 cut(s)	139, 207, 608
CviAII	CATG	5 cut(s)	79, 793, 826, 872, 960
CviQI	GTAC	3 cut(s)	139, 207, 608
DdeI	CTNAG	2 cut(s)	38, 110
DpnI	GATC	1 cut(s)	667
DpnII	GATC	1 cut(s)	665
DrdI	GACNNNNNNGTC	1 cut(s)	368
DriI	GACNNNNNGTC	1 cut(s)	501
DseDI	GACNNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	918
Eam1104I	CTCTTC	1 cut(s)	873
Eam1105I	GACNNNNNGTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	561
FaeI	CATG	5 cut(s)	82, 796, 829, 875, 963
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	5 cut(s)	78, 792, 825, 871, 959
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	180, 771
FokI	GGATG	1 cut(s)	832
Fsp4HI	GCNGC	2 cut(s)	180, 771
FspBI	CTAG	2 cut(s)	572, 638
GluI	GCNGC	2 cut(s)	180, 771
HaeIII	GGCC	3 cut(s)	392, 566, 920
HapII	CCGG	2 cut(s)	253, 702
Hin1II	CATG	5 cut(s)	82, 796, 829, 875, 963
HinfI	GANTC	3 cut(s)	778, 796, 868
HpaII	CCGG	2 cut(s)	253, 702
HphI	GGTGA	2 cut(s)	139, 160
Hpy188III	TCNNGA	5 cut(s)	61, 359, 702, 793, 817
HpyAV	CCTTC	2 cut(s)	201, 637
HpyCH4III	ACNGT	4 cut(s)	199, 538, 754, 844
HpyCH4V	TGCA	6 cut(s)	87, 179, 263, 892, 929, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 889, 926, 956
HpyF3I	CTNAG	2 cut(s)	38, 110
Hsp92II	CATG	5 cut(s)	82, 796, 829, 875, 963
Kpn2I	TCCGGA	1 cut(s)	701
KpnI	GGTACC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	665
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	2 cut(s)	704, 792
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	4 cut(s)	96, 344, 636, 938
MaeI	CTAG	2 cut(s)	572, 638
MaeIII	GTNAC	4 cut(s)	232, 343, 418, 759
MalI	GATC	1 cut(s)	667
MboI	GATC	1 cut(s)	665
MboII	GAAGA	3 cut(s)	626, 715, 890
MflI	RGATCY	1 cut(s)	665
MlsI	TGGCCA	1 cut(s)	920
MluCI	AATT	5 cut(s)	5, 33, 102, 327, 586
MluNI	TGGCCA	1 cut(s)	920
MlyI	GAGTC	1 cut(s)	862
Mox20I	TGGCCA	1 cut(s)	920
MroI	TCCGGA	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	920
MslI	CAYNNNNRTG	2 cut(s)	818, 830
Msp20I	TGGCCA	1 cut(s)	920
MspI	CCGG	2 cut(s)	253, 702
MspR9I	CCNGG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	707
MvaI	CCWGG	1 cut(s)	563
MvnI	CGCG	2 cut(s)	203, 354
MwoI	GCNNNNNNNGC	4 cut(s)	572, 889, 926, 956
NdeII	GATC	1 cut(s)	665
NlaIII	CATG	5 cut(s)	82, 796, 829, 875, 963
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	343, 759
PagI	TCATGA	1 cut(s)	792
PceI	AGGCCT	1 cut(s)	566
PciSI	GCTCTTC	1 cut(s)	873
PctI	GAATGC	1 cut(s)	707
PfeI	GAWTC	2 cut(s)	778, 796
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	181, 772
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
PpuMI	RGGWCCY	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	752
PsiI	TTATAA	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	247, 390
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	3 cut(s)	140, 208, 609
RsaNI	GTAC	3 cut(s)	139, 207, 608
RseI	CAYNNNNRTG	2 cut(s)	818, 830
SapI	GCTCTTC	1 cut(s)	873
SatI	GCNGC	2 cut(s)	180, 771
Sau3AI	GATC	1 cut(s)	665
Sau96I	GGNCC	2 cut(s)	247, 390
ScaI	AGTACT	1 cut(s)	609
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	1 cut(s)	563
SfaNI	GCATC	4 cut(s)	96, 344, 636, 938
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	818, 830
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	5, 33, 102, 327, 586
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	4 cut(s)	203, 288, 354, 770
SspMI	CTAG	2 cut(s)	572, 638
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	561
TaaI	ACNGT	4 cut(s)	199, 538, 754, 844
TaqI	TCGA	2 cut(s)	612, 630
TasI	AATT	5 cut(s)	5, 33, 102, 327, 586
TatI	WGTACW	2 cut(s)	138, 607
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	2 cut(s)	778, 796
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	2 cut(s)	343, 759
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	2 cut(s)	343, 759
TspDTI	ATGAA	4 cut(s)	17, 271, 802, 809
TspRI	CASTG	1 cut(s)	952
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	3 cut(s)	5, 33, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XspI	CTAG	2 cut(s)	572, 638
ZrmI	AGTACT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.