Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

27051990 .. 27053382

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG124700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTACCCCTTTGCAATGCAAGAAAGATTTAGAAGCTCTGAAGAGTATCAATCCCTCTTTCTTTTGATGAAGTTTAACATGCTTTTGGATTTTCGGGGACTCCTAAGGGAATCCCACAAGCTTTTCTTCCGAAATGGGAAGGCCATGTCCTCCCTCACCCTTCTCATAATACTTGTTACTTCTTTCCTGTTGGTGATTCATATCTACTCCCTCGAACCAATAATTACTGATATTACAATCAAGGCAAACTTCCTGGCAGCTACAAGTCCCACTGGCGCTGAATTCGCTCGTCTTCTAACTGCCATGATGTACGACTTCAGAGTATATCTTGGACTACAATGGATTTTCATTTTGGGGTTCTCTTTTACCTCATTCTATTTTGCAACAGCCTCAATCTTAGCATCAGCAGTATCATACTGTGGAAAAGACTTGTCCATCAAGGAACTTCTACCAAGGGCACTGAGGTCACTGAAAAGACCATTTGTTACATGGTTTTACATAACACTGCTTGATCTAGGCTACTTATCATTTCTCTTTGCATTTGTTTTTCCTTTAGTGCTGATTTTCAATCTTAAGCTCACCATATCTGCTTTCACTATAGTCGCATCCATTCTAGCTCTAGTTGTCAGAACTTATCTCGCTGTTGTGTGGAACTTAGCACTAGTTGTTTCGATACTAGAAGAAAAATGTGGCATTGAGGCACTTGGGAAAGCTGGACAGCTTATTAAGGGATCAAAGCTACGAGGGTTTTTTCTGAATCTTGTTATAGCCACTGCCTCGTCGGTGTTATTTGTTTTGTTTAGGACTGTTGCTAAAGCTATGCCAGTAAAAGCACTGATAATTCCATTGCTCCTGTTAAATTGTATCAGCTGCCTCATAACTATGGTCTTGCTAATGGCATACACAGTCCTGTACTATGAGTCCAAGGTGACTCATGGAGAAGAGCTTGAACTGCAAGGAAGCTTGGAATATGCCAAGGTTTCCTCTGCTACCCCTCTTATCAATGCAGATGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

38.05

Weight (kDa)

9.24

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	739
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	2 cut(s)	60, 301
AfaI	GTAC	3 cut(s)	5, 311, 914
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	568, 950
AhlI	ACTAGT	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	252
AlwI	GGATC	1 cut(s)	739
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	257, 870
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	278
AsuHPI	GGTGA	4 cut(s)	148, 205, 571, 940
AxyI	CCTNAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	269, 857
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	5 cut(s)	515, 614, 620, 662, 677
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	279
BfrI	CTTAAG	1 cut(s)	572
BisI	GCNGC	2 cut(s)	258, 871
BlsI	GCNGC	2 cut(s)	259, 872
Bme1390I	CCNGG	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	3 cut(s)	410, 614, 1000
BpiI	GAAGAC	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	452, 924, 975
Bse1I	ACTGG	2 cut(s)	277, 824
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	2 cut(s)	21, 845
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	452, 924, 975
BseGI	GGATG	1 cut(s)	605
BseJI	GATNNNNATC	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	21, 845
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	2 cut(s)	277, 824
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	269, 857
BshFI	GGCC	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	111, 252
BsmFI	GGGAC	2 cut(s)	111, 252
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	511, 731
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	453
BspPI	GGATC	1 cut(s)	739
BspQI	GCTCTTC	1 cut(s)	936
BspTI	CTTAAG	1 cut(s)	572
BsrDI	GCAATG	2 cut(s)	21, 845
BsrI	ACTGG	2 cut(s)	277, 824
BssECI	CCNNGG	3 cut(s)	452, 924, 975
BssMI	GATC	2 cut(s)	511, 731
BssT1I	CCWWGG	3 cut(s)	452, 924, 975
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	419, 808, 907
Bst6I	CTCTTC	2 cut(s)	36, 936
BstAFI	CTTAAG	1 cut(s)	572
BstDEI	CTNAG	4 cut(s)	104, 397, 461, 655
BstF5I	GGATG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	2 cut(s)	514, 734
BstMBI	GATC	2 cut(s)	511, 731
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 952
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	269, 857
BstV2I	GAAGAC	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	605
BtsI	GCAGTG	2 cut(s)	503, 771
BtsIMutI	CAGTG	6 cut(s)	270, 458, 467, 503, 771, 833
CfoI	GCGC	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	4, 310, 913
CviAII	CATG	5 cut(s)	79, 145, 304, 489, 935
CviQI	GTAC	3 cut(s)	4, 310, 913
DdeI	CTNAG	4 cut(s)	104, 397, 461, 655
DpnI	GATC	2 cut(s)	513, 733
DpnII	GATC	2 cut(s)	511, 731
Eam1104I	CTCTTC	2 cut(s)	36, 936
EarI	CTCTTC	2 cut(s)	36, 936
Eco130I	CCWWGG	3 cut(s)	452, 924, 975
Eco57I	CTGAAG	2 cut(s)	60, 301
Eco81I	CCTNAGG	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	452, 924, 975
ErhI	CCWWGG	3 cut(s)	452, 924, 975
FaeI	CATG	5 cut(s)	82, 148, 307, 492, 938
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 233, 265
FaqI	GGGAC	2 cut(s)	111, 252
FatI	CATG	5 cut(s)	78, 144, 303, 488, 934
Fnu4HI	GCNGC	2 cut(s)	258, 871
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	258, 871
FspBI	CTAG	5 cut(s)	515, 614, 620, 662, 677
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	2 cut(s)	258, 871
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	82, 148, 307, 492, 938
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	2 cut(s)	119, 961
HinfI	GANTC	6 cut(s)	99, 110, 196, 757, 920, 931
HphI	GGTGA	4 cut(s)	148, 205, 571, 940
Hpy188I	TCNGA	5 cut(s)	40, 131, 320, 629, 756
Hpy99I	CGWCG	1 cut(s)	784
HpyAV	CCTTC	2 cut(s)	133, 170
HpyCH4III	ACNGT	3 cut(s)	419, 808, 907
HpyCH4V	TGCA	7 cut(s)	14, 19, 383, 539, 955, 1007, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 952
HpyF3I	CTNAG	4 cut(s)	104, 397, 461, 655
Hsp92II	CATG	5 cut(s)	82, 148, 307, 492, 938
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	511, 731
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	1 cut(s)	855
LpnPI	CCDG	8 cut(s)	200, 239, 258, 266, 699, 837, 866, 923
Lsp1109I	GCAGC	2 cut(s)	269, 857
LweI	GCATC	3 cut(s)	410, 614, 1000
MaeI	CTAG	5 cut(s)	515, 614, 620, 662, 677
MaeIII	GTNAC	4 cut(s)	175, 465, 484, 928
MalI	GATC	2 cut(s)	513, 733
MboI	GATC	2 cut(s)	511, 731
MboII	GAAGA	5 cut(s)	53, 118, 284, 692, 953
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	4 cut(s)	222, 281, 840, 859
MlyI	GAGTC	3 cut(s)	93, 925, 929
MseI	TTAA	4 cut(s)	75, 573, 726, 857
MslI	CAYNNNNRTG	1 cut(s)	881
MspA1I	CMGCKG	1 cut(s)	870
MspCI	CTTAAG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	284, 952
NdeII	GATC	2 cut(s)	511, 731
NlaIII	CATG	5 cut(s)	82, 148, 307, 492, 938
NmuCI	GTSAC	2 cut(s)	465, 928
NspI	RCATGY	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	936
PfeI	GAWTC	3 cut(s)	110, 196, 757
PkrI	GCNGC	2 cut(s)	259, 872
PleI	GAGTC	3 cut(s)	93, 925, 928
PpsI	GAGTC	3 cut(s)	93, 925, 928
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	870
RsaI	GTAC	3 cut(s)	5, 311, 914
RsaNI	GTAC	3 cut(s)	4, 310, 913
RseI	CAYNNNNRTG	1 cut(s)	881
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	4 cut(s)	75, 573, 726, 857
SatI	GCNGC	2 cut(s)	258, 871
Sau3AI	GATC	2 cut(s)	511, 731
SchI	GAGTC	3 cut(s)	93, 925, 929
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	3 cut(s)	410, 614, 1000
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	661
Sse9I	AATT	4 cut(s)	222, 281, 840, 859
SspMI	CTAG	5 cut(s)	515, 614, 620, 662, 677
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	3 cut(s)	452, 924, 975
TaaI	ACNGT	3 cut(s)	419, 808, 907
TaqI	TCGA	2 cut(s)	213, 671
TasI	AATT	4 cut(s)	222, 281, 840, 859
TatI	WGTACW	1 cut(s)	912
TfiI	GAWTC	3 cut(s)	110, 196, 757
Tru1I	TTAA	4 cut(s)	75, 573, 726, 857
Tru9I	TTAA	4 cut(s)	75, 573, 726, 857
TscAI	CASTG	6 cut(s)	277, 465, 474, 510, 778, 840
TseFI	GTSAC	2 cut(s)	465, 928
TseI	GCWGC	2 cut(s)	257, 870
Tsp45I	GTSAC	2 cut(s)	465, 928
TspDTI	ATGAA	3 cut(s)	83, 188, 337
TspRI	CASTG	6 cut(s)	277, 465, 474, 510, 778, 840
Vha464I	CTTAAG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XspI	CTAG	5 cut(s)	515, 614, 620, 662, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.