Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

21186330 .. 21187274

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTTTTGGAATTTCTGGGACTCCTAAGGGAATCCCACAAACTTTTCTTCAGAAATGGGAAGGCCATGTGCTCCATCATTCTTTTCATTATACTTGTTCGGTCTTTCCTCTTGGTGATTAATTTCTACTCCCTCAAACCAATAATCACTGATTTTGCAATCAAAGCACGCTTCCTGGCAGCTACGAGTCCCGGAGGCGCTGAATTCGCCGATCTTGTAACTGCTGCCATGTACGACTTCGGATTATTTCTTGGACTAGAATGGACTTTCATTTTGGGGTTGTCTTTTGCCTCTTTATTTTTTGCAACAGTCTCAATCTTAGCATCAGCAGTATCATACTCTGGAAAAGACTTGTCCATCAAGGAACTTCTACCAAAGGCACTGAAGTCATTGAAAAGACCATTTGTTACATGGTTTTACATAACACTGCTTGATCTAGGTTGTTTTTCATTTTTCTTTGCCTTTGTTCTTCCTTTACTGCTGATTTTCAATCTTCAGCTCTCCATCTTTGCTTTCGTTATAATCGCATGCACTCTAGCTCTAGTTGTTCGGACTCATCTAGCTGTTGTGTGGAACTTGGCACTTGTTGTTTCGATATTAGAAGAAAAATGTGGCATCGAGGCACTTGGGAAAGCTGGACAGCTTATTAAGGGATCAAAGCTACGAGGGTTTTTTCTGAATCTTGTTATAGCCACCTCCTCGTGGATGTTATTTGATTTGTATAGGACTGTCGCTAAAGCTATGCCAGTAAAAGCAGTGATAATTCCATTGCTCCTCTTAAATTGTATCGGCTGCCTCATCGCTATGGTTTCTCGAATGGCATATACAGTCCTGTACTATGAGTCCAAGGCAACTCATGGAGAAGAGCTTGAACGTACTGCAAGGAAGCTTGGACATGCTAAGGTTACCTCTGCTACCCCTCTTATCAATGCAGATGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

34.75

Weight (kDa)

9.36

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AclWI	GGATC	1 cut(s)	661
AcsI	RAATTY	2 cut(s)	11, 203
AcuI	CTGAAG	3 cut(s)	34, 404, 479
AfaI	GTAC	3 cut(s)	233, 836, 877
AfiI	CCNNNNNNNGG	1 cut(s)	702
AgsI	TTSAA	3 cut(s)	394, 490, 872
AjnI	CCWGG	1 cut(s)	174
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	661
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	179, 224, 792
ApoI	RAATTY	2 cut(s)	11, 203
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	26
BauI	CACGAG	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	3 cut(s)	191, 211, 779
BccI	CCATC	3 cut(s)	83, 365, 512
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	5 cut(s)	257, 437, 536, 542, 560
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	3 cut(s)	180, 225, 793
BlsI	GCNGC	3 cut(s)	181, 226, 794
Bme1390I	CCNGG	2 cut(s)	176, 192
BmrFI	CCNGG	2 cut(s)	176, 192
BmsI	GCATC	3 cut(s)	332, 624, 925
Bpu10I	CCTNAGC	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	846
Bsc4I	CCNNNNNNNGG	1 cut(s)	702
Bse1I	ACTGG	1 cut(s)	746
Bse21I	CCTNAGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	767
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	846
BseGI	GGATG	1 cut(s)	711
BseLI	CCNNNNNNNGG	1 cut(s)	702
BseMI	GCAATG	1 cut(s)	767
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	2 cut(s)	688, 764
BseXI	GCAGC	3 cut(s)	191, 211, 779
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	33, 174
BslI	CCNNNNNNNGG	1 cut(s)	702
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	33, 174
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	211, 433, 653
BspANI	GGCC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	661
BspQI	GCTCTTC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	767
BsrI	ACTGG	1 cut(s)	746
BssECI	CCNNGG	1 cut(s)	846
BssMI	GATC	3 cut(s)	211, 433, 653
BssSI	CACGAG	1 cut(s)	700
BssT1I	CCWWGG	1 cut(s)	846
Bst2BI	CACGAG	1 cut(s)	700
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	310, 730, 829
Bst6I	CTCTTC	1 cut(s)	858
BstC8I	GCNNGC	2 cut(s)	169, 529
BstDEI	CTNAG	3 cut(s)	26, 319, 900
BstEII	GGTNACC	1 cut(s)	904
BstF5I	GGATG	1 cut(s)	711
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	214, 436, 656
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	3 cut(s)	211, 433, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 206
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	531, 899
BstPI	GGTNACC	1 cut(s)	904
BstSCI	CCNGG	2 cut(s)	174, 190
BstV1I	GCAGC	3 cut(s)	191, 211, 779
Bsu36I	CCTNAGG	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	784
BtsCI	GGATG	1 cut(s)	711
BtsI	GCAGTG	2 cut(s)	425, 762
BtsIMutI	CAGTG	4 cut(s)	147, 380, 425, 762
Cac8I	GCNNGC	2 cut(s)	169, 529
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	232, 835, 876
CviAII	CATG	6 cut(s)	67, 229, 411, 528, 857, 896
CviQI	GTAC	3 cut(s)	232, 835, 876
DdeI	CTNAG	3 cut(s)	26, 319, 900
DpnI	GATC	3 cut(s)	213, 435, 655
DpnII	GATC	3 cut(s)	211, 433, 653
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	846
Eco57I	CTGAAG	3 cut(s)	34, 404, 479
Eco81I	CCTNAGG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	904
EcoO65I	GGTNACC	1 cut(s)	904
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	6 cut(s)	70, 232, 414, 531, 860, 899
FaqI	GGGAC	2 cut(s)	33, 174
FatI	CATG	6 cut(s)	66, 228, 410, 527, 856, 895
Fnu4HI	GCNGC	3 cut(s)	180, 225, 793
FokI	GGATG	1 cut(s)	718
Fsp4HI	GCNGC	3 cut(s)	180, 225, 793
FspBI	CTAG	5 cut(s)	257, 437, 536, 542, 560
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	180, 225, 793
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	6 cut(s)	70, 232, 414, 531, 860, 899
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	6 cut(s)	21, 32, 187, 553, 679, 842
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	4 cut(s)	53, 242, 552, 678
Hpy188III	TCNNGA	2 cut(s)	342, 813
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	310, 730, 829
HpyCH4IV	ACGT	1 cut(s)	874
HpyCH4V	TGCA	6 cut(s)	158, 305, 531, 881, 932, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 206
HpyF3I	CTNAG	3 cut(s)	26, 319, 900
HpySE526I	ACGT	1 cut(s)	874
Hsp92II	CATG	6 cut(s)	70, 232, 414, 531, 860, 899
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	211, 433, 653
LguI	GCTCTTC	1 cut(s)	858
LmnI	GCTCC	2 cut(s)	77, 777
LpnPI	CCDG	8 cut(s)	2, 161, 188, 205, 327, 621, 759, 845
Lsp1109I	GCAGC	3 cut(s)	191, 211, 779
LweI	GCATC	3 cut(s)	332, 624, 925
MaeI	CTAG	5 cut(s)	257, 437, 536, 542, 560
MaeII	ACGT	1 cut(s)	874
MaeIII	GTNAC	3 cut(s)	217, 406, 904
MalI	GATC	3 cut(s)	213, 435, 655
MboI	GATC	3 cut(s)	211, 433, 653
MboII	GAAGA	5 cut(s)	40, 461, 485, 614, 875
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	5 cut(s)	11, 121, 203, 762, 781
MlyI	GAGTC	4 cut(s)	15, 196, 547, 851
MseI	TTAA	3 cut(s)	120, 648, 779
MslI	CAYNNNNRTG	1 cut(s)	803
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	176, 192
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	164, 206
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	211, 433, 653
NlaIII	CATG	6 cut(s)	70, 232, 414, 531, 860, 899
NspI	RCATGY	2 cut(s)	531, 899
PaeI	GCATGC	1 cut(s)	531
PciSI	GCTCTTC	1 cut(s)	858
PfeI	GAWTC	2 cut(s)	32, 679
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	181, 226, 794
PleI	GAGTC	4 cut(s)	15, 195, 547, 850
PpsI	GAGTC	4 cut(s)	15, 195, 547, 850
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	174
RsaI	GTAC	3 cut(s)	233, 836, 877
RsaNI	GTAC	3 cut(s)	232, 835, 876
RseI	CAYNNNNRTG	1 cut(s)	803
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	120, 648, 779
SatI	GCNGC	3 cut(s)	180, 225, 793
Sau3AI	GATC	3 cut(s)	211, 433, 653
SchI	GAGTC	4 cut(s)	15, 196, 547, 851
ScrFI	CCNGG	2 cut(s)	176, 192
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	3 cut(s)	332, 624, 925
SmiMI	CAYNNNNRTG	1 cut(s)	803
SphI	GCATGC	1 cut(s)	531
Sse9I	AATT	5 cut(s)	11, 121, 203, 762, 781
SspMI	CTAG	5 cut(s)	257, 437, 536, 542, 560
StyD4I	CCNGG	2 cut(s)	174, 190
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	3 cut(s)	310, 730, 829
TaiI	ACGT	1 cut(s)	877
TaqI	TCGA	3 cut(s)	593, 618, 814
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	5 cut(s)	11, 121, 203, 762, 781
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	2 cut(s)	32, 679
Tru1I	TTAA	3 cut(s)	120, 648, 779
Tru9I	TTAA	3 cut(s)	120, 648, 779
TscAI	CASTG	4 cut(s)	154, 387, 432, 762
TseI	GCWGC	3 cut(s)	179, 224, 792
TspDTI	ATGAA	3 cut(s)	76, 259, 438
TspRI	CASTG	4 cut(s)	154, 387, 432, 762
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	2 cut(s)	11, 203
XceI	RCATGY	2 cut(s)	531, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XspI	CTAG	5 cut(s)	257, 437, 536, 542, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.