Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002107

Physical Location & Seq

Genomic Coordinates Reverse (-)

23130600 .. 23131929

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCAAGAAAGATTTAGAAGCTCTGAACAGTATCAATCCCTCTTTCTTTTGATGAAGTTTAACATGCTTTTGGATTTTCTGGGACTCCTAAGGGAATCCCACAAGCTTTTCTTCCGAAATGGGAAGGCCATGTCCTCCCTCACGCTTCTCATAATACTTGTTACTTCTTTCCTGTGGGTGATTCATTTCTACTCCCTCAAACCAATAATTACTGATATTACAATCAAGGAAAACTTCCTGGCAGCTACAAGTCCCACTGGCGCTGAATTCGCTCGTCTTCTAACTGCCCTGATGTACGACTTCAGAGTATATCTTGGACTACAATGGATTTTCATTTTGGGGTCCTCTTTTACCTCATTCTATTTTGCAACAGCCTCAATCTTAGCATCAGCAGTATCATACTGTGGAAATGACTTGTCCATCAAGGAACTTCTACCAAGGGCACTGAGGTCACTGAAAGGACCATTTGTTACATGGTTTTACATAACACTGCTTGATCTAGGCTACTTATCATTTCTCTTTGCATTTGTTTTTTCTTTAGTGCTGATTTTCAATCTTAAGCTCACCATATCTGCTTTCACTATAGTCGCATCCATTCTAGCTCTAGTTGTCAGAACTTATCTCGCTGTTGTGTGGAACTTAGCACTAGTTGTTTCGATACTAGAAGAAAAATGTGGCATTGAGGCACTTGGGAAAGCTGGACAGCTTATTAAGGGATCAAAGCTACGAGGGTTTTTTCTGAATCTTGTTATAGCCGCTGCCTCGTTGGTGTTATTTGTTTTGTTTAGGACTGCTGCTAAAGCTGTGCCAGTAAAAGCACTGATAATTCCATTGCTCCTGTTAAATTGTATCGGCTGCCTCATAACTATGGTTTTGCTAATTGCATACACAGTGCTGTATTATGAGTCCAAGGCGACTCATGGAGAAGAGCTTGAACTGCAAGGAAGCTTGGAATATGCTAAGGTTTCCTCTGCTACCCCTCTTATCAATGCAGATGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.22

Weight (kDa)

9.16

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18680 AT2G18690 AT2G18690
malus_domestica	MD16G1263500.v1.1
prunus_persica	Prupe.1G095700_v2.0.a1 Prupe.1G095800_v2.0.a1 Prupe.1G095900_v2.0.a1
pyrus_communis	pycom16g23240
rosa_chinensis	RchiOBHm_Chr4g0404701 RchiOBHm_Chr4g0404711 RchiOBHm_Chr4g0404721
rosa_laevigata	RLG00000008905 RLG00000008906 RLG00000008908 RLG00000008911 RLG00000008912 RLG00000008914
rosa_multiflora	Rmu_sc0001179.1_g000050 Rmu_sc0001179.1_g000051 Rmu_sc0004312.1_g000001 Rmu_sc0005685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017040 Rroxscaffold_5G00348900 Rroxscaffold_5G00348910
rosa_rugosa	Rorug04G0048900 Rorug04G0049000
rosa_samantha	Rh4AG124600 Rh4AG124700 Rh4BG118800 Rh4BG118900 Rh4BG119000 Rh4CG132800 Rh4CG132900 Rh4CG133000 Rh4DG117900 Rh4DG118000 Rh4DG118100 Rh5AG418500 Rh5BG434300 Rh5CG457500 Rh5DG447400
rosa_wichuraiana	Rw4G010090 Rw4G010100 Rw5G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	1 cut(s)	724
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	286
AfaI	GTAC	1 cut(s)	296
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	553, 935
AhlI	ACTAGT	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	237
AlwI	GGATC	1 cut(s)	724
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	242, 758, 794, 855
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	342, 461
AsuHPI	GGTGA	2 cut(s)	190, 556
AvaII	GGWCC	2 cut(s)	342, 461
AxyI	CCTNAGG	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	4 cut(s)	254, 745, 781, 842
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	239
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	5 cut(s)	500, 599, 605, 647, 662
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	5 cut(s)	243, 756, 759, 795, 856
BlsI	GCNGC	5 cut(s)	244, 757, 760, 796, 857
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	342, 461
BmgT120I	GGNCC	2 cut(s)	342, 461
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	3 cut(s)	395, 599, 985
BpiI	GAAGAC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	960
BsaJI	CCNNGG	2 cut(s)	437, 909
Bse1I	ACTGG	2 cut(s)	262, 809
Bse21I	CCTNAGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	830
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	437, 909
BseGI	GGATG	1 cut(s)	590
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	2 cut(s)	262, 809
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	4 cut(s)	254, 745, 781, 842
BshFI	GGCC	1 cut(s)	128
BslFI	GGGAC	2 cut(s)	96, 237
BsmFI	GGGAC	2 cut(s)	96, 237
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	496, 716
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	921
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	262, 809
BssECI	CCNNGG	2 cut(s)	437, 909
BssMI	GATC	2 cut(s)	496, 716
BssT1I	CCWWGG	2 cut(s)	437, 909
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	30, 404, 892
Bst6I	CTCTTC	1 cut(s)	921
BstAFI	CTTAAG	1 cut(s)	557
BstDEI	CTNAG	5 cut(s)	89, 382, 446, 640, 960
BstF5I	GGATG	1 cut(s)	590
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	2 cut(s)	499, 719
BstMBI	GATC	2 cut(s)	496, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 800, 937
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	254, 745, 781, 842
BstV2I	GAAGAC	1 cut(s)	269
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	590
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	6 cut(s)	255, 443, 452, 488, 818, 897
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	342, 461
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	4 cut(s)	64, 130, 474, 920
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	5 cut(s)	89, 382, 446, 640, 960
DpnI	GATC	2 cut(s)	498, 718
DpnII	GATC	2 cut(s)	496, 716
Eam1104I	CTCTTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	921
Eco130I	CCWWGG	2 cut(s)	437, 909
Eco47I	GGWCC	2 cut(s)	342, 461
Eco57I	CTGAAG	1 cut(s)	286
Eco81I	CCTNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	437, 909
ErhI	CCWWGG	2 cut(s)	437, 909
FaeI	CATG	4 cut(s)	67, 133, 477, 923
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 218, 250
FaqI	GGGAC	2 cut(s)	96, 237
FatI	CATG	4 cut(s)	63, 129, 473, 919
Fnu4HI	GCNGC	5 cut(s)	243, 756, 759, 795, 856
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	5 cut(s)	243, 756, 759, 795, 856
FspBI	CTAG	5 cut(s)	500, 599, 605, 647, 662
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	5 cut(s)	243, 756, 759, 795, 856
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	67, 133, 477, 923
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HindIII	AAGCTT	2 cut(s)	104, 946
HinfI	GANTC	6 cut(s)	84, 95, 181, 742, 905, 916
HphI	GGTGA	2 cut(s)	190, 556
Hpy188I	TCNGA	5 cut(s)	25, 116, 305, 614, 741
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	3 cut(s)	30, 404, 892
HpyCH4V	TGCA	7 cut(s)	4, 368, 524, 884, 940, 992, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 800, 937
HpyF3I	CTNAG	5 cut(s)	89, 382, 446, 640, 960
Hsp92II	CATG	4 cut(s)	67, 133, 477, 923
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	496, 716
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	1 cut(s)	840
LpnPI	CCDG	9 cut(s)	65, 185, 224, 243, 251, 302, 684, 822, 851
Lsp1109I	GCAGC	4 cut(s)	254, 745, 781, 842
LweI	GCATC	3 cut(s)	395, 599, 985
MaeI	CTAG	5 cut(s)	500, 599, 605, 647, 662
MaeIII	GTNAC	3 cut(s)	160, 450, 469
MalI	GATC	2 cut(s)	498, 718
MboI	GATC	2 cut(s)	496, 716
MboII	GAAGA	4 cut(s)	103, 269, 677, 938
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	5 cut(s)	207, 266, 825, 844, 879
MlyI	GAGTC	3 cut(s)	78, 910, 914
MseI	TTAA	4 cut(s)	60, 558, 711, 842
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	269, 800, 937
NdeII	GATC	2 cut(s)	496, 716
NlaIII	CATG	4 cut(s)	67, 133, 477, 923
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	450
NspI	RCATGY	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	921
PfeI	GAWTC	3 cut(s)	95, 181, 742
PkrI	GCNGC	5 cut(s)	244, 757, 760, 796, 857
PleI	GAGTC	3 cut(s)	78, 910, 913
PpsI	GAGTC	3 cut(s)	78, 910, 913
PpuMI	RGGWCCY	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	342, 461
PspPPI	RGGWCCY	1 cut(s)	342
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	866
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	4 cut(s)	60, 558, 711, 842
SatI	GCNGC	5 cut(s)	243, 756, 759, 795, 856
Sau3AI	GATC	2 cut(s)	496, 716
Sau96I	GGNCC	2 cut(s)	342, 461
SchI	GAGTC	3 cut(s)	78, 910, 914
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	3 cut(s)	395, 599, 985
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	2 cut(s)	342, 461
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	646
Sse9I	AATT	5 cut(s)	207, 266, 825, 844, 879
SsiI	CCGC	1 cut(s)	756
SspMI	CTAG	5 cut(s)	500, 599, 605, 647, 662
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	437, 909
TaaI	ACNGT	3 cut(s)	30, 404, 892
TaqI	TCGA	1 cut(s)	656
TasI	AATT	5 cut(s)	207, 266, 825, 844, 879
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	3 cut(s)	95, 181, 742
Tru1I	TTAA	4 cut(s)	60, 558, 711, 842
Tru9I	TTAA	4 cut(s)	60, 558, 711, 842
TscAI	CASTG	6 cut(s)	262, 450, 459, 495, 825, 897
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	4 cut(s)	242, 758, 794, 855
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	3 cut(s)	68, 173, 322
TspRI	CASTG	6 cut(s)	262, 450, 459, 495, 825, 897
Vha464I	CTTAAG	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	342, 461
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XspI	CTAG	5 cut(s)	500, 599, 605, 647, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.