Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001178

Physical Location & Seq

Genomic Coordinates Forward (+)

8677960 .. 8682175

Gene Structure 4216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAATAGAGGAGTGTTGGAGAGTTCGCCGGTTCAACATCTCACGGCGGCTGGAAACCCTAATTGGTGGAATAATGTCAGCCGCGGCTTGAGGCCACCAACGCCGTTGATGAGTCACGAGCCGCCGTCTACCACCGCTTTTATTCCAAGTCTCTTGCCAAACTTCTTCTCTTCTCCGACTTCCTCTTCATCTTCTTCACCTTCTTTCCCTCCTCCTAATAGTAACCCTAACTTCTCTTCTTGGCTTGAAATGAGTGATCTGCCTCTTGATCAGCCATGGAGCCTTAGTCAACTCCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGAACCATCATCATCATCAAAATCAACACCAAAGTTACCAAGCGAAGAGGATACAAAATTGGGAAGAACAAGTTTTGAGGCACCAAGCTTCCATGAAACAAGAGAGTAGTAATAATAATAGTTATGGAATAATGTCCTCACCAAACTCACCTCCAAACAAATCTTGTGCTACAATTATCAACACCAATGAAGACAACAACAATAACATTCACAGTGGTCTTAACTTGTCCGAGTGTAATAGCTCAGAGATGATTGGGTCTTCTTTTGCTAATAAGAAACCAAAACTTCAAGTTCCTTCATCACAATCAACTCTCAAGGTGAGAAAGGAGAAACTTGGAGGCAGAATAGCATCTCTTCACCAGCTAGTATCTCCCTTTGGCAAGACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGGCTTTAAGTCTACCATACTTTGGTACTCCCTCGAGGAACAATATGATGCACCAACATGCACAAAGAAATATGAATGGTATATTTCCTGAGGACCCTGGTCAGCTTGTGAATGAGTATTGCATGAAAAGAGGAGTTTCATTGTCATCGACGGACAATCAAAAATCAAATCCTAACGAAGAACCGATGAAAGATTTGAGAAGTAGAGGGCTTTGTCTTGTTCCCATCTCATGCACACTACAAGTTGGCAGCGACAATGGTGCCGACTATTGGGCTCCGGCGTTCGGAACCACTCTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

40.06

Weight (kDa)

6.67

Isoelectric Point (pI)

67.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20100 AT2G20100 AT2G20100 AT2G20100 AT4G29100 AT4G29100
fragaria_vesca	FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900
malus_domestica	MD02G1056800.v1.1 MD09G1208300.v1.1 MD15G1191400.v1.1 MD17G1190000.v1.1
prunus_persica	Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.7G225800_v2.0.a1
pyrus_communis	pycom02g04600 pycom09g12450 pycom15g17140 pycom17g19760
rosa_chinensis	RchiOBHm_Chr2g0091241 RchiOBHm_Chr2g0139261
rosa_laevigata	RLG00000016195 RLG00000019800
rosa_multiflora	Rmu_sc0002270.1_g000018 Rmu_sc0002525.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105520 Rroxscaffold_2G00150350
rosa_rugosa	Rorug02G0014700 Rorug02G0014800 Rorug02G0356100 Rorug02G0356200 Rorug02G0356300 Rorug02G0356400 Rorug02G0356500 Rorug02G0356600
rosa_samantha	Rh2AG060500 Rh2AG406100 Rh2BG059200 Rh2BG416700 Rh2CG061000 Rh2CG392400 Rh2DG059800 Rh2DG425800
rosa_wichuraiana	Rw2G004940 Rw2G032910 Rw2G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	820
AccB1I	GGYRCC	2 cut(s)	420, 1046
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccI	GTMKAC	2 cut(s)	128, 799
AccII	CGCG	1 cut(s)	84
AciI	CCGC	5 cut(s)	47, 82, 84, 122, 135
AfaI	GTAC	1 cut(s)	814
AfiI	CCNNNNNNNGG	3 cut(s)	809, 1056, 1070
AgsI	TTSAA	3 cut(s)	35, 248, 629
AjnI	CCWGG	1 cut(s)	883
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	4 cut(s)	428, 582, 703, 892
AluI	AGCT	4 cut(s)	428, 582, 703, 892
Alw26I	GTCTC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	737
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	1035
AspS9I	GGNCC	1 cut(s)	880
AsuHPI	GGTGA	5 cut(s)	189, 471, 480, 670, 689
AvaI	CYCGRG	1 cut(s)	820
AvaII	GGWCC	1 cut(s)	880
AxyI	CCTNAGG	1 cut(s)	876
BanI	GGYRCC	2 cut(s)	420, 1046
BanII	GRGCYC	1 cut(s)	1063
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	537, 591
BbvI	GCAGC	1 cut(s)	1047
BccI	CCATC	3 cut(s)	307, 354, 1019
BceAI	ACGGC	3 cut(s)	60, 88, 109
BcgI	CGANNNNNNTGC	2 cut(s)	1028, 1062
BciT130I	CCWGG	1 cut(s)	885
BciVI	GTATCC	2 cut(s)	384, 752
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	704
BfuI	GTATCC	2 cut(s)	384, 752
BisI	GCNGC	5 cut(s)	48, 82, 85, 122, 1036
BlsI	GCNGC	5 cut(s)	49, 83, 86, 123, 1037
Bme1390I	CCNGG	1 cut(s)	885
Bme18I	GGWCC	1 cut(s)	880
BmeT110I	CYCGRG	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	880
BmiI	GGNNCC	6 cut(s)	281, 422, 882, 1048, 1062, 1075
BmrFI	CCNGG	1 cut(s)	885
BmsI	GCATC	2 cut(s)	698, 825
BoxI	GACNNNNGTC	1 cut(s)	885
BpiI	GAAGAC	2 cut(s)	537, 591
BpmI	CTGGAG	1 cut(s)	1067
BpuEI	CTTGAG	2 cut(s)	109, 638
BsaJI	CCNNGG	3 cut(s)	82, 275, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	3 cut(s)	809, 1056, 1070
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	1084
Bse21I	CCTNAGG	1 cut(s)	876
BseBI	CCWGG	1 cut(s)	885
BseDI	CCNNGG	3 cut(s)	82, 275, 883
BseLI	CCNNNNNNNGG	3 cut(s)	809, 1056, 1070
BseMII	CTCAG	2 cut(s)	597, 867
BseNI	ACTGG	1 cut(s)	1084
BseRI	GAGGAG	4 cut(s)	24, 201, 284, 933
BseXI	GCAGC	1 cut(s)	1047
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	2 cut(s)	420, 1046
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	2 cut(s)	29, 1064
BslI	CCNNNNNNNGG	3 cut(s)	809, 1056, 1070
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	1063
Bsp143I	GATC	2 cut(s)	256, 268
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	5 cut(s)	47, 82, 84, 122, 135
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	596, 868
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	6 cut(s)	281, 422, 882, 1048, 1062, 1075
BspT107I	GGYRCC	2 cut(s)	420, 1046
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	1084
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	82, 275, 883
BssMI	GATC	2 cut(s)	256, 268
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	2 cut(s)	554, 779
Bst6I	CTCTTC	6 cut(s)	175, 190, 241, 318, 380, 699
BstDEI	CTNAG	3 cut(s)	284, 583, 876
BstDSI	CCRYGG	2 cut(s)	82, 275
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	2 cut(s)	259, 271
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	256, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	885
BstNSI	RCATGY	1 cut(s)	848
BstPAI	GACNNNNGTC	1 cut(s)	885
BstSCI	CCNGG	1 cut(s)	883
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	1047
BstV2I	GAAGAC	2 cut(s)	537, 591
Bsu36I	CCTNAGG	1 cut(s)	876
BsuI	GTATCC	2 cut(s)	384, 752
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	2 cut(s)	82, 275
BtsIMutI	CAGTG	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	737
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	880
Cfr42I	CCGCGG	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	813
CviAII	CATG	5 cut(s)	276, 433, 845, 910, 1017
CviQI	GTAC	1 cut(s)	813
DdeI	CTNAG	3 cut(s)	284, 583, 876
DpnI	GATC	2 cut(s)	258, 270
DpnII	GATC	2 cut(s)	256, 268
Eam1104I	CTCTTC	6 cut(s)	175, 190, 241, 318, 380, 699
EarI	CTCTTC	6 cut(s)	175, 190, 241, 318, 380, 699
Eco130I	CCWWGG	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	1063
Eco47I	GGWCC	1 cut(s)	880
Eco81I	CCTNAGG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	883
EcoT14I	CCWWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	1063
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	5 cut(s)	279, 436, 848, 913, 1020
FatI	CATG	5 cut(s)	275, 432, 844, 909, 1016
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	2 cut(s)	128, 799
Fnu4HI	GCNGC	5 cut(s)	48, 82, 85, 122, 1036
FriOI	GRGCYC	1 cut(s)	1063
Fsp4HI	GCNGC	5 cut(s)	48, 82, 85, 122, 1036
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	5 cut(s)	48, 82, 85, 122, 1036
GsuI	CTGGAG	1 cut(s)	1067
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	2 cut(s)	29, 1064
Hin1II	CATG	5 cut(s)	279, 436, 848, 913, 1020
HincII	GTYRAC	1 cut(s)	290
HindII	GTYRAC	1 cut(s)	290
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	112, 768
HpaII	CCGG	2 cut(s)	29, 1064
HphI	GGTGA	5 cut(s)	189, 471, 480, 670, 689
Hpy166II	GTNNAC	3 cut(s)	129, 290, 800
Hpy188I	TCNGA	5 cut(s)	177, 571, 586, 748, 1073
Hpy188III	TCNNGA	3 cut(s)	116, 266, 875
Hpy8I	GTNNAC	3 cut(s)	129, 290, 800
Hpy99I	CGWCG	1 cut(s)	940
HpyAV	CCTTC	2 cut(s)	210, 645
HpyCH4III	ACNGT	2 cut(s)	554, 779
HpyCH4V	TGCA	4 cut(s)	838, 848, 909, 1020
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	3 cut(s)	284, 583, 876
Hsp92II	CATG	5 cut(s)	279, 436, 848, 913, 1020
Ksp22I	TGATCA	1 cut(s)	268
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	256, 268
LmnI	GCTCC	2 cut(s)	279, 1066
LpnPI	CCDG	7 cut(s)	36, 42, 713, 870, 888, 897, 1077
Lsp1109I	GCAGC	1 cut(s)	1047
LweI	GCATC	2 cut(s)	698, 825
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	3 cut(s)	113, 221, 374
MalI	GATC	2 cut(s)	258, 270
MboI	GATC	2 cut(s)	256, 268
MhlI	GDGCHC	1 cut(s)	1063
MluCI	AATT	4 cut(s)	61, 397, 513, 783
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	200, 726
MseI	TTAA	2 cut(s)	561, 794
MslI	CAYNNNNRTG	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	2 cut(s)	29, 1064
MspR9I	CCNGG	1 cut(s)	885
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	2 cut(s)	256, 268
NlaIII	CATG	5 cut(s)	279, 436, 848, 913, 1020
NlaIV	GGNNCC	6 cut(s)	281, 422, 882, 1048, 1062, 1075
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	848
PaeR7I	CTCGAG	1 cut(s)	820
PfeI	GAWTC	1 cut(s)	768
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	5 cut(s)	49, 83, 86, 123, 1037
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PpuMI	RGGWCCY	1 cut(s)	880
PshAI	GACNNNNGTC	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	880
Psp6I	CCWGG	1 cut(s)	883
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	6 cut(s)	281, 422, 882, 1048, 1062, 1075
PspPI	GGNCC	1 cut(s)	880
PspPPI	RGGWCCY	1 cut(s)	880
PspXI	VCTCGAGB	1 cut(s)	820
PstNI	CAGNNNCTG	1 cut(s)	737
RsaI	GTAC	1 cut(s)	814
RsaNI	GTAC	1 cut(s)	813
RseI	CAYNNNNRTG	1 cut(s)	843
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	561, 794
SatI	GCNGC	5 cut(s)	48, 82, 85, 122, 1036
Sau3AI	GATC	2 cut(s)	256, 268
Sau96I	GGNCC	1 cut(s)	880
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	885
SduI	GDGCHC	1 cut(s)	1063
SetI	ASST	7 cut(s)	202, 430, 493, 584, 660, 705, 894
SfaNI	GCATC	2 cut(s)	698, 825
Sfr274I	CTCGAG	1 cut(s)	820
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	880
SlaI	CTCGAG	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	3 cut(s)	88, 653, 820
SmoI	CTYRAG	3 cut(s)	88, 653, 820
Sse9I	AATT	4 cut(s)	61, 397, 513, 783
SsiI	CCGC	5 cut(s)	47, 82, 84, 122, 135
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	883
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	554, 779
TaqI	TCGA	2 cut(s)	821, 935
TasI	AATT	4 cut(s)	61, 397, 513, 783
TauI	GCSGC	4 cut(s)	50, 84, 87, 124
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	2 cut(s)	561, 794
Tru9I	TTAA	2 cut(s)	561, 794
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	1035
Tsp45I	GTSAC	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	953
TspRI	CASTG	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	880
XceI	RCATGY	1 cut(s)	848
XhoI	CTCGAG	1 cut(s)	820
XmiI	GTMKAC	2 cut(s)	128, 799
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.