Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001178

Physical Location & Seq

Genomic Coordinates Forward (+)

22606200 .. 22609456

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1190000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATGGCTGGAAACCCTAACTGGTGGAGCAGTATGCATCCACCATCTCTCTTCCCTTCTCAATATGTGCAGCTTGGATCTCCTAATTCACTCCCTCTGCCTGACCATAACCTAGAGCCTCCACAATCCTGGAGCCAGTTACTATTGGGTGGATTGTCCAGCCAGGAAGATACCTTTGGTACTCTGAGTCATAATTTTCAACCTAAAAGTAGGTTGGAAAGTTGGGAGGAGGACCAAATCTTGATTACACAATATCCAAGGGCTCCTCTTCCTCCTCATGGTGTTGATAATATTATAAAGCAAGAGGCTAACTCCCAGAACAGCATTAACTTATTGGGCAGTAGTCCTCATGGAGATGAAGAATTTCAGCTGCAGACACTTAGCAGCTGCAGGCCTGTTTGGTCCCCAGTTCAAACCATGCCAGTTTCATCCCCTAGCTCTTGTGTCACTAGTTTAAGTAATACTAATAATATATTGGACTTCTCCTATAACAAAACTGACAATAAGAGGAACCAACATGCAGATCACTCATCTGAGTGTAATAGCACTGACACTGGTGGGATAAGCAAGAAGGCCAGGGTTCAACAATCTCCAAGCCAACCACCTCTCAAGGTGAGGAAGGAGAAGCTGGGTGATAGGATAACATCCCTTCACCAACTAGTTTCCCCGTTTGGGAAGACTGACACTGCTTCAGTCTTGTTAGAAGCCATCGGGTATATCAGATTCCTTCAGGGTCAAATTGAGGCCCTCAGCTCCCCTTACTTGGGCAATGCCTCAAAAAACACGAGGAAGCAACAGTCTCTGCTGAATGACAATTGCCTGAAAAGCAAAGGCGCTCCTAACCAGGAATCACAAGATCATAAGGCAAAGGATCTAAGAAGTAAAGGGTTGTGCTTGGTTCCTGTGTCATGCACTCAGCATGTTGGGAGTGACAATGGAGCTGATTATTGGGCTCCTGCTTATGGAAATGGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

35.69

Weight (kDa)

6.55

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20100 AT2G20100 AT2G20100 AT2G20100 AT4G29100 AT4G29100
fragaria_vesca	FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900
malus_domestica	MD02G1056800.v1.1 MD09G1208300.v1.1 MD15G1191400.v1.1 MD17G1190000.v1.1
prunus_persica	Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.7G225800_v2.0.a1
pyrus_communis	pycom02g04600 pycom09g12450 pycom15g17140 pycom17g19760
rosa_chinensis	RchiOBHm_Chr2g0091241 RchiOBHm_Chr2g0139261
rosa_laevigata	RLG00000016195 RLG00000019800
rosa_multiflora	Rmu_sc0002270.1_g000018 Rmu_sc0002525.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105520 Rroxscaffold_2G00150350
rosa_rugosa	Rorug02G0014700 Rorug02G0014800 Rorug02G0356100 Rorug02G0356200 Rorug02G0356300 Rorug02G0356400 Rorug02G0356500 Rorug02G0356600
rosa_samantha	Rh2AG060500 Rh2AG406100 Rh2BG059200 Rh2BG416700 Rh2CG061000 Rh2CG392400 Rh2DG059800 Rh2DG425800
rosa_wichuraiana	Rw2G004940 Rw2G032910 Rw2G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AclWI	GGATC	2 cut(s)	85, 879
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	675, 713
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	5 cut(s)	278, 672, 763, 764, 962
AgsI	TTSAA	3 cut(s)	200, 413, 584
AhlI	ACTAGT	2 cut(s)	449, 658
AjnI	CCWGG	4 cut(s)	128, 162, 575, 843
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	7 cut(s)	73, 370, 387, 438, 628, 753, 941
AluI	AGCT	7 cut(s)	73, 370, 387, 438, 628, 753, 941
Alw26I	GTCTC	1 cut(s)	804
AlwI	GGATC	2 cut(s)	85, 879
AlwNI	CAGNNNCTG	1 cut(s)	802
AoxI	GGCC	3 cut(s)	392, 573, 744
ApeKI	GCWGC	4 cut(s)	70, 370, 384, 387
ApoI	RAATTY	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	836
AspS9I	GGNCC	3 cut(s)	232, 402, 745
AsuHPI	GGTGA	3 cut(s)	625, 644, 644
AvaII	GGWCC	2 cut(s)	232, 402
BanII	GRGCYC	2 cut(s)	265, 955
BauI	CACGAG	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	683
BbvCI	CCTCAGC	1 cut(s)	749
BbvI	GCAGC	4 cut(s)	82, 357, 374, 396
BccI	CCATC	2 cut(s)	52, 716
BciT130I	CCWGG	4 cut(s)	130, 164, 577, 845
BcoDI	GTCTC	1 cut(s)	804
BcuI	ACTAGT	2 cut(s)	449, 658
BfaI	CTAG	4 cut(s)	113, 435, 450, 659
BfmI	CTRYAG	2 cut(s)	371, 388
BfoI	RGCGCY	1 cut(s)	837
BisI	GCNGC	4 cut(s)	71, 371, 385, 388
BlsI	GCNGC	4 cut(s)	72, 372, 386, 389
Bme1390I	CCNGG	4 cut(s)	130, 164, 577, 845
Bme18I	GGWCC	2 cut(s)	232, 402
BmgT120I	GGNCC	3 cut(s)	232, 402, 745
BmiI	GGNNCC	6 cut(s)	134, 264, 404, 512, 900, 954
BmrFI	CCNGG	4 cut(s)	130, 164, 577, 845
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	683
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	749
BpuEI	CTTGAG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	257, 576
Bsc4I	CCNNNNNNNGG	5 cut(s)	278, 672, 763, 764, 962
Bse1I	ACTGG	5 cut(s)	26, 136, 407, 422, 559
Bse3DI	GCAATG	1 cut(s)	775
BseBI	CCWGG	4 cut(s)	130, 164, 577, 845
BseDI	CCNNGG	2 cut(s)	257, 576
BseGI	GGATG	3 cut(s)	37, 428, 644
BseLI	CCNNNNNNNGG	5 cut(s)	278, 672, 763, 764, 962
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	4 cut(s)	176, 525, 763, 929
BseNI	ACTGG	5 cut(s)	26, 136, 407, 422, 559
BseRI	GAGGAG	3 cut(s)	242, 255, 264
BseXI	GCAGC	4 cut(s)	82, 357, 374, 396
BseYI	CCCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	394, 575, 746
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	5 cut(s)	278, 672, 763, 764, 962
BsmAI	GTCTC	1 cut(s)	804
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	394, 575, 746
Bsp1286I	GDGCHC	2 cut(s)	265, 955
Bsp143I	GATC	4 cut(s)	77, 523, 856, 871
BspANI	GGCC	3 cut(s)	394, 575, 746
BspCNI	CTCAG	4 cut(s)	177, 526, 762, 928
BspLI	GGNNCC	6 cut(s)	134, 264, 404, 512, 900, 954
BspMAI	CTGCAG	2 cut(s)	375, 392
BspPI	GGATC	2 cut(s)	85, 879
BsrDI	GCAATG	1 cut(s)	775
BsrI	ACTGG	5 cut(s)	26, 136, 407, 422, 559
BssECI	CCNNGG	2 cut(s)	257, 576
BssMI	GATC	4 cut(s)	77, 523, 856, 871
BssSI	CACGAG	1 cut(s)	784
BssT1I	CCWWGG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	784
Bst2UI	CCWGG	4 cut(s)	130, 164, 577, 845
Bst4CI	ACNGT	1 cut(s)	798
Bst6I	CTCTTC	2 cut(s)	56, 273
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	6 cut(s)	185, 380, 534, 749, 875, 915
BstF5I	GGATG	3 cut(s)	37, 428, 644
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	4 cut(s)	80, 526, 859, 874
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	4 cut(s)	77, 523, 856, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	825
BstNI	CCWGG	4 cut(s)	130, 164, 577, 845
BstNSI	RCATGY	2 cut(s)	521, 923
BstSCI	CCNGG	4 cut(s)	128, 162, 575, 843
BstSFI	CTRYAG	2 cut(s)	371, 388
BstV1I	GCAGC	4 cut(s)	82, 357, 374, 396
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	2 cut(s)	77, 871
BstXI	CCANNNNNNTGG	1 cut(s)	129
BstYI	RGATCY	2 cut(s)	77, 871
BsuRI	GGCC	3 cut(s)	394, 575, 746
BtsCI	GGATG	3 cut(s)	37, 428, 644
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	546, 552, 684
Cac8I	GCNNGC	1 cut(s)	392
CaiI	CAGNNNCTG	1 cut(s)	802
CfoI	GCGC	1 cut(s)	836
Cfr13I	GGNCC	3 cut(s)	232, 402, 745
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	6 cut(s)	278, 350, 418, 518, 909, 920
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	6 cut(s)	185, 380, 534, 749, 875, 915
DpnI	GATC	4 cut(s)	79, 525, 858, 873
DpnII	GATC	4 cut(s)	77, 523, 856, 871
Eam1104I	CTCTTC	2 cut(s)	56, 273
EarI	CTCTTC	2 cut(s)	56, 273
Eco130I	CCWWGG	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	2 cut(s)	265, 955
Eco47I	GGWCC	2 cut(s)	232, 402
Eco57I	CTGAAG	2 cut(s)	675, 713
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	4 cut(s)	128, 162, 575, 843
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	265, 955
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	6 cut(s)	281, 353, 421, 521, 912, 923
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	6 cut(s)	277, 349, 417, 517, 908, 919
Fnu4HI	GCNGC	4 cut(s)	71, 371, 385, 388
FokI	GGATG	3 cut(s)	24, 415, 631
FriOI	GRGCYC	2 cut(s)	265, 955
Fsp4HI	GCNGC	4 cut(s)	71, 371, 385, 388
FspBI	CTAG	4 cut(s)	113, 435, 450, 659
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	4 cut(s)	71, 371, 385, 388
GsaI	CCCAGC	1 cut(s)	632
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	3 cut(s)	394, 575, 746
HhaI	GCGC	1 cut(s)	836
Hin1II	CATG	6 cut(s)	281, 353, 421, 521, 912, 923
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HinfI	GANTC	3 cut(s)	187, 723, 848
HphI	GGTGA	3 cut(s)	625, 644, 644
Hpy188I	TCNGA	3 cut(s)	186, 535, 722
Hpy188III	TCNNGA	1 cut(s)	241
HpyAV	CCTTC	5 cut(s)	66, 565, 613, 659, 737
HpyCH4III	ACNGT	1 cut(s)	798
HpyCH4V	TGCA	6 cut(s)	37, 70, 373, 390, 521, 912
HpyF10VI	GCNNNNNNNGC	1 cut(s)	825
HpyF3I	CTNAG	6 cut(s)	185, 380, 534, 749, 875, 915
Hsp92II	CATG	6 cut(s)	281, 353, 421, 521, 912, 923
HspAI	GCGC	1 cut(s)	834
Kzo9I	GATC	4 cut(s)	77, 523, 856, 871
LmnI	GCTCC	7 cut(s)	27, 132, 268, 758, 841, 938, 958
Lsp1109I	GCAGC	4 cut(s)	82, 357, 374, 396
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	4 cut(s)	113, 435, 450, 659
MaeIII	GTNAC	3 cut(s)	138, 445, 929
MalI	GATC	4 cut(s)	79, 525, 858, 873
MboI	GATC	4 cut(s)	77, 523, 856, 871
MboII	GAAGA	5 cut(s)	43, 179, 260, 371, 688
MfeI	CAATTG	1 cut(s)	814
MflI	RGATCY	2 cut(s)	77, 871
MhlI	GDGCHC	2 cut(s)	265, 955
MluCI	AATT	5 cut(s)	85, 193, 362, 738, 814
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	3 cut(s)	327, 455, 976
MslI	CAYNNNNRTG	2 cut(s)	354, 535
MspA1I	CMGCKG	2 cut(s)	370, 387
MspR9I	CCNGG	4 cut(s)	130, 164, 577, 845
MunI	CAATTG	1 cut(s)	814
MvaI	CCWGG	4 cut(s)	130, 164, 577, 845
MwoI	GCNNNNNNNGC	1 cut(s)	825
NdeII	GATC	4 cut(s)	77, 523, 856, 871
NlaIII	CATG	6 cut(s)	281, 353, 421, 521, 912, 923
NlaIV	GGNNCC	6 cut(s)	134, 264, 404, 512, 900, 954
NmuCI	GTSAC	2 cut(s)	445, 929
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	2 cut(s)	521, 923
PceI	AGGCCT	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	723, 848
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	72, 372, 386, 389
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	296
Psp6I	CCWGG	4 cut(s)	128, 162, 575, 843
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	4 cut(s)	128, 162, 575, 843
PspN4I	GGNNCC	6 cut(s)	134, 264, 404, 512, 900, 954
PspPI	GGNCC	3 cut(s)	232, 402, 745
PstI	CTGCAG	2 cut(s)	375, 392
PstNI	CAGNNNCTG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	77, 871
PvuII	CAGCTG	2 cut(s)	370, 387
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	2 cut(s)	354, 535
SaqAI	TTAA	3 cut(s)	327, 455, 976
SatI	GCNGC	4 cut(s)	71, 371, 385, 388
Sau3AI	GATC	4 cut(s)	77, 523, 856, 871
Sau96I	GGNCC	3 cut(s)	232, 402, 745
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	4 cut(s)	130, 164, 577, 845
SduI	GDGCHC	2 cut(s)	265, 955
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	2 cut(s)	371, 388
SinI	GGWCC	2 cut(s)	232, 402
SmiMI	CAYNNNNRTG	2 cut(s)	354, 535
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SpeI	ACTAGT	2 cut(s)	449, 658
Sse9I	AATT	5 cut(s)	85, 193, 362, 738, 814
SseBI	AGGCCT	1 cut(s)	394
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	4 cut(s)	113, 435, 450, 659
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	4 cut(s)	128, 162, 575, 843
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	798
TasI	AATT	5 cut(s)	85, 193, 362, 738, 814
TfiI	GAWTC	2 cut(s)	723, 848
Tru1I	TTAA	3 cut(s)	327, 455, 976
Tru9I	TTAA	3 cut(s)	327, 455, 976
TscAI	CASTG	3 cut(s)	553, 559, 691
TseFI	GTSAC	2 cut(s)	445, 929
TseI	GCWGC	4 cut(s)	70, 370, 384, 387
Tsp45I	GTSAC	2 cut(s)	445, 929
TspDTI	ATGAA	2 cut(s)	372, 417
TspRI	CASTG	3 cut(s)	553, 559, 691
VpaK11BI	GGWCC	2 cut(s)	232, 402
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	2 cut(s)	521, 923
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	4 cut(s)	113, 435, 450, 659
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.