Rh2CG061000

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001178
Physical Location & Seq
Reverse (-)
4962826 .. 4966110
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG061000.1

Sequence Viewer

Length: 1158 bp
ATGAATAGAGGTCATGTTTTGCAGAGCTCACCGGTGCAACAAATGATGGCGGCTGGAAACCCTAACTGGTGGAACATCAATAGCATGAGGGCGCCAACAACGAACCAACCTTCATCTTCTCCTTTCCTGCCTGCTCCTCATCACCCTAGTTTTTTCATTCCACAGTTTCAACCTACTAGTTCCTCCTCTTCTTCACTTCCCTTTATTCCTTCTTGGCATGACAACAATAACCAGAACCAGAACCAGGAGCTTCCAGAGTCTTGGAGCCAACTCCTCCTGGGGGGATTGGTTGGTGAAGATGATAAGGCAAATGGTCTGAGACAATTATTCCATCAAGGTAAGAAATTGGAGGACTGGGAGGAGCAAATATTGAGTAGTCAAGCTCATCTGAATGCTCCTGTTAATGTTGATGTGAAGCAAGAAAACTCGCCACCAGGGAGCTTTCTGTACGGACATCATGGGAATGGGAATAATAATGAAGATTTTCAGTCTGCAGCTTTGTGCTCTTTGTCTCAAATTATGCCAACCACTACTGCTGCCTCAGCCTCATCTCCCAAGTCGTCGTGTGTGACGAGTTTCGGTAGCAACATGTTGGATTTCTCTAACAAGTCGGAGGGGAGGCATCCACCACCGAGCCGATCCAGCTCCGAGTGTAATAGCAGTGCAACTGGTGGGGCAGTTAAGAAAGCTAGGGTTCAACCTTCTTCTTCAGCCCAACCTACCTTCAAGGTGAGGAAGGAGAAATTAGGTGACAGAATTACAGCTCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAGGCTATTGGGTATATCAGATTCCTTCAGAATCAAATTGAGGCCCTAAGCTTACCTTACTTGGGCAGTGGATCACCAAACATGCGCCAGCAGCAGCAACAGTCTGCAGTTCATGGGGAGAGGAACTGTATGTTTCCTGAAGATCCTGGGCAGCTGCTGAATGACAACTGCATGAAGAGGAAAGGAGTTAATTCCGAGCAGGATGCTTATGAAGAGCCAAAGAAGGACCTCAGGAGTAGGGGCTTGTGTTTGGTTCCGGTTTCTTGTACCCTGCAAGTTGGGAGCGACAACGGAGCAGATTATTGGGCTCCGGCAGCTCTCGGCGGAGGTTTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

41.84

Weight (kDa)

6.41

Isoelectric Point (pI)

67.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 2 cut(s) 50, 1143
AclWI GGATC 3 cut(s) 633, 898, 956
AcuI CTGAAG 3 cut(s) 693, 830, 978
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 2 cut(s) 449, 1087
AfiI CCNNNNNNNGG 3 cut(s) 244, 280, 881
AflIII ACRYGT 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 3 cut(s) 170, 698, 727
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 4 cut(s) 243, 276, 433, 964
Alw21I GWGCWC 2 cut(s) 29, 506
Alw26I GTCTC 2 cut(s) 313, 516
AlwI GGATC 3 cut(s) 633, 898, 956
AlwNI CAGNNNCTG 2 cut(s) 809, 976
AoxI GGCC 1 cut(s) 861
ApeKI GCWGC 7 cut(s) 494, 536, 910, 913, 970, 973, 1133
AsiGI ACCGGT 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 483
AspLEI GCGC 2 cut(s) 94, 906
AspS9I GGNCC 2 cut(s) 862, 1045
AsuHPI GGTGA 6 cut(s) 21, 134, 305, 742, 761, 885
AvaII GGWCC 1 cut(s) 1045
AxyI CCTNAGG 1 cut(s) 1049
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 2 cut(s) 29, 1129
Bbv12I GWGCWC 2 cut(s) 29, 506
BbvCI CCTCAGC 1 cut(s) 541
BbvI GCAGC 7 cut(s) 506, 523, 922, 925, 960, 982, 1145
BccI CCATC 2 cut(s) 40, 339
BcgI CGANNNNNNTGC 2 cut(s) 1004, 1038
BciT130I CCWGG 4 cut(s) 245, 278, 435, 966
BcoDI GTCTC 2 cut(s) 313, 516
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 147, 177, 690
BfmI CTRYAG 2 cut(s) 492, 924
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 8 cut(s) 51, 495, 537, 911, 914, 971, 974, 1134
BlsI GCNGC 8 cut(s) 52, 496, 538, 912, 915, 972, 975, 1135
Bme1390I CCNGG 4 cut(s) 245, 278, 435, 966
Bme18I GGWCC 1 cut(s) 1045
BmgT120I GGNCC 2 cut(s) 862, 1045
BmiI GGNNCC 4 cut(s) 93, 266, 1074, 1128
BmrFI CCNGG 4 cut(s) 245, 278, 435, 966
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 631, 1012
BmuI ACTGGG 1 cut(s) 364
Bpu10I CCTNAGC 2 cut(s) 541, 866
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 277, 434, 965
BsaWI WCCGGW 2 cut(s) 31, 1075
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 280, 881
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 4 cut(s) 71, 359, 673, 1153
Bse21I CCTNAGG 1 cut(s) 1049
BseBI CCWGG 4 cut(s) 245, 278, 435, 966
BseDI CCNNGG 3 cut(s) 277, 434, 965
BseGI GGATG 2 cut(s) 622, 1027
BseLI CCNNNNNNNGG 3 cut(s) 244, 280, 881
BseMII CTCAG 3 cut(s) 308, 555, 1063
BseNI ACTGG 4 cut(s) 71, 359, 673, 1153
BseRI GAGGAG 4 cut(s) 126, 175, 263, 374
BseXI GCAGC 7 cut(s) 506, 523, 922, 925, 960, 982, 1145
BshFI GGCC 1 cut(s) 863
BshNI GGYRCC 1 cut(s) 91
BshTI ACCGGT 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 29, 506
BsiSI CCGG 3 cut(s) 32, 1076, 1130
BslI CCNNNNNNNGG 3 cut(s) 244, 280, 881
BsmAI GTCTC 2 cut(s) 313, 516
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 1 cut(s) 863
Bsp1286I GDGCHC 3 cut(s) 29, 506, 1129
Bsp143I GATC 3 cut(s) 638, 890, 961
BspACI CCGC 2 cut(s) 50, 1143
BspANI GGCC 1 cut(s) 863
BspCNI CTCAG 3 cut(s) 309, 554, 1062
BspLI GGNNCC 4 cut(s) 93, 266, 1074, 1128
BspMAI CTGCAG 2 cut(s) 496, 928
BspPI GGATC 3 cut(s) 633, 898, 956
BspQI GCTCTTC 2 cut(s) 771, 1026
BspT107I GGYRCC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 4 cut(s) 71, 359, 673, 1153
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 277, 434, 965
BssMI GATC 3 cut(s) 638, 890, 961
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 4 cut(s) 245, 278, 435, 966
Bst4CI ACNGT 3 cut(s) 165, 921, 947
Bst6I CTCTTC 4 cut(s) 193, 771, 989, 1026
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 132, 908
BstDEI CTNAG 4 cut(s) 317, 541, 866, 1049
BstF5I GGATG 2 cut(s) 622, 1027
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 906
BstKTI GATC 3 cut(s) 641, 893, 964
BstMAI GTCTC 2 cut(s) 313, 516
BstMBI GATC 3 cut(s) 638, 890, 961
BstMWI GCNNNNNNNGC 4 cut(s) 542, 642, 910, 1133
BstNI CCWGG 4 cut(s) 245, 278, 435, 966
BstNSI RCATGY 2 cut(s) 592, 904
BstSCI CCNGG 4 cut(s) 243, 276, 433, 964
BstSFI CTRYAG 2 cut(s) 492, 924
BstV1I GCAGC 7 cut(s) 506, 523, 922, 925, 960, 982, 1145
BstX2I RGATCY 1 cut(s) 961
BstXI CCANNNNNNTGG 1 cut(s) 261
BstYI RGATCY 1 cut(s) 961
Bsu36I CCTNAGG 1 cut(s) 1049
BsuRI GGCC 1 cut(s) 863
BtsCI GGATG 2 cut(s) 622, 1027
BtsI GCAGTG 2 cut(s) 667, 892
BtsIMutI CAGTG 2 cut(s) 667, 892
Cac8I GCNNGC 2 cut(s) 132, 908
CaiI CAGNNNCTG 2 cut(s) 809, 976
CfoI GCGC 2 cut(s) 94, 906
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 862, 1045
Csp6I GTAC 2 cut(s) 448, 1086
CspAI ACCGGT 1 cut(s) 31
CviAII CATG 8 cut(s) 14, 85, 218, 458, 589, 901, 932, 991
CviQI GTAC 2 cut(s) 448, 1086
DdeI CTNAG 4 cut(s) 317, 541, 866, 1049
DinI GGCGCC 1 cut(s) 93
DpnI GATC 3 cut(s) 640, 892, 963
DpnII GATC 3 cut(s) 638, 890, 961
Eam1104I CTCTTC 4 cut(s) 193, 771, 989, 1026
EarI CTCTTC 4 cut(s) 193, 771, 989, 1026
EciI GGCGGA 1 cut(s) 1158
Ecl136II GAGCTC 1 cut(s) 27
Eco24I GRGCYC 2 cut(s) 29, 1129
Eco47I GGWCC 1 cut(s) 1045
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 3 cut(s) 693, 830, 978
Eco81I CCTNAGG 1 cut(s) 1049
EcoICRI GAGCTC 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 862, 1045
EcoRII CCWGG 4 cut(s) 243, 276, 433, 964
EcoT38I GRGCYC 2 cut(s) 29, 1129
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
FaeI CATG 8 cut(s) 17, 88, 221, 461, 592, 904, 935, 994
FalI AAGNNNNNCTT 2 cut(s) 859, 891
FatI CATG 8 cut(s) 13, 84, 217, 457, 588, 900, 931, 990
Fnu4HI GCNGC 8 cut(s) 51, 495, 537, 911, 914, 971, 974, 1134
FokI GGATG 2 cut(s) 609, 1034
FriOI GRGCYC 2 cut(s) 29, 1129
Fsp4HI GCNGC 8 cut(s) 51, 495, 537, 911, 914, 971, 974, 1134
FspBI CTAG 3 cut(s) 147, 177, 690
GlaI GCGC 2 cut(s) 93, 905
GluI GCNGC 8 cut(s) 51, 495, 537, 911, 914, 971, 974, 1134
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 1 cut(s) 863
HapII CCGG 3 cut(s) 32, 1076, 1130
HhaI GCGC 2 cut(s) 94, 906
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 8 cut(s) 17, 88, 221, 461, 592, 904, 935, 994
Hin6I GCGC 2 cut(s) 92, 904
HinP1I GCGC 2 cut(s) 92, 904
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 3 cut(s) 257, 840, 850
HpaII CCGG 3 cut(s) 32, 1076, 1130
HphI GGTGA 6 cut(s) 21, 134, 305, 742, 761, 885
Hpy188I TCNGA 7 cut(s) 318, 390, 613, 649, 839, 849, 1015
Hpy188III TCNNGA 3 cut(s) 254, 956, 1051
Hpy99I CGWCG 1 cut(s) 565
HpyAV CCTTC 7 cut(s) 120, 219, 711, 730, 733, 854, 1036
HpyCH4III ACNGT 3 cut(s) 165, 921, 947
HpyCH4V TGCA 7 cut(s) 22, 37, 494, 665, 926, 990, 1093
HpyF10VI GCNNNNNNNGC 4 cut(s) 542, 642, 910, 1133
HpyF3I CTNAG 4 cut(s) 317, 541, 866, 1049
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 8 cut(s) 17, 88, 221, 461, 592, 904, 935, 994
HspAI GCGC 2 cut(s) 92, 904
KasI GGCGCC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 638, 890, 961
LguI GCTCTTC 2 cut(s) 771, 1026
Lsp1109I GCAGC 7 cut(s) 506, 523, 922, 925, 960, 982, 1145
LweI GCATC 2 cut(s) 631, 1012
MaeI CTAG 3 cut(s) 147, 177, 690
MaeIII GTNAC 2 cut(s) 568, 749
MalI GATC 3 cut(s) 640, 892, 963
MboI GATC 3 cut(s) 638, 890, 961
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 3 cut(s) 29, 506, 1129
MluCI AATT 7 cut(s) 323, 344, 516, 743, 756, 855, 1009
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 573, 591
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 3 cut(s) 402, 681, 1008
MslI CAYNNNNRTG 2 cut(s) 390, 462
MspA1I CMGCKG 1 cut(s) 973
MspI CCGG 3 cut(s) 32, 1076, 1130
MspR9I CCNGG 4 cut(s) 245, 278, 435, 966
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 4 cut(s) 245, 278, 435, 966
MwoI GCNNNNNNNGC 4 cut(s) 542, 642, 910, 1133
NarI GGCGCC 1 cut(s) 92
NdeII GATC 3 cut(s) 638, 890, 961
NlaIII CATG 8 cut(s) 17, 88, 221, 461, 592, 904, 935, 994
NlaIV GGNNCC 4 cut(s) 93, 266, 1074, 1128
NmeAIII GCCGAG 1 cut(s) 1119
NmuCI GTSAC 2 cut(s) 568, 749
NspI RCATGY 2 cut(s) 592, 904
PciI ACATGT 1 cut(s) 588
PciSI GCTCTTC 2 cut(s) 771, 1026
PcsI WCGNNNNNNNCGW 1 cut(s) 569
PctI GAATGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 840, 850
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 8 cut(s) 52, 496, 538, 912, 915, 972, 975, 1135
PleI GAGTC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 1045
PscI ACATGT 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 1045
Psp6I CCWGG 4 cut(s) 243, 276, 433, 964
PspGI CCWGG 4 cut(s) 243, 276, 433, 964
PspN4I GGNNCC 4 cut(s) 93, 266, 1074, 1128
PspPI GGNCC 2 cut(s) 862, 1045
PspPPI RGGWCCY 1 cut(s) 1045
PstI CTGCAG 2 cut(s) 496, 928
PstNI CAGNNNCTG 2 cut(s) 809, 976
PsuI RGATCY 1 cut(s) 961
PvuII CAGCTG 1 cut(s) 973
RsaI GTAC 2 cut(s) 449, 1087
RsaNI GTAC 2 cut(s) 448, 1086
RseI CAYNNNNRTG 2 cut(s) 390, 462
SacI GAGCTC 1 cut(s) 29
SapI GCTCTTC 2 cut(s) 771, 1026
SaqAI TTAA 3 cut(s) 402, 681, 1008
SatI GCNGC 8 cut(s) 51, 495, 537, 911, 914, 971, 974, 1134
Sau3AI GATC 3 cut(s) 638, 890, 961
Sau96I GGNCC 2 cut(s) 862, 1045
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 4 cut(s) 245, 278, 435, 966
SduI GDGCHC 3 cut(s) 29, 506, 1129
SfaNI GCATC 2 cut(s) 631, 1012
SfcI CTRYAG 2 cut(s) 492, 924
SfoI GGCGCC 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 31
SinI GGWCC 1 cut(s) 1045
SmiMI CAYNNNNRTG 2 cut(s) 390, 462
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 7 cut(s) 323, 344, 516, 743, 756, 855, 1009
SsiI CCGC 2 cut(s) 50, 1143
SspDI GGCGCC 1 cut(s) 91
SspI AATATT 1 cut(s) 369
SspMI CTAG 3 cut(s) 147, 177, 690
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 243, 276, 433, 964
TaaI ACNGT 3 cut(s) 165, 921, 947
TasI AATT 7 cut(s) 323, 344, 516, 743, 756, 855, 1009
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 840, 850
Tru1I TTAA 3 cut(s) 402, 681, 1008
Tru9I TTAA 3 cut(s) 402, 681, 1008
TscAI CASTG 2 cut(s) 667, 892
TseFI GTSAC 2 cut(s) 568, 749
TseI GCWGC 7 cut(s) 494, 536, 910, 913, 970, 973, 1133
Tsp45I GTSAC 2 cut(s) 568, 749
TspDTI ATGAA 8 cut(s) 17, 102, 145, 492, 758, 920, 1007, 1044
TspGWI ACGGA 2 cut(s) 465, 1125
TspRI CASTG 2 cut(s) 667, 892
VpaK11BI GGWCC 1 cut(s) 1045
XceI RCATGY 2 cut(s) 592, 904
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 3 cut(s) 147, 177, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.