Rh2BG416700
BHLH Family

Transcription factor bHLH68-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001178
Physical Location & Seq
Reverse (-)
58797395 .. 58800576
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG416700.1

Sequence Viewer

Length: 843 bp
ATGATGGCCGGAAACCCTAACTGGTGGAGCACGCATCCACCGTCATCTATCTTCCCTTCTCAATATGTGCTTGGATCTTCTAATTCACTCCCTCAGCTCAATTCATTCCCTGATCAGCATAACCTACAGCCTCCACAATCTTGGAGCCAATTACTCCTGGGCGGATTGTCCGGAGAAGATCAAGACAACTTTGGAAGTTTGAATCATTTTCCACCTAAAAGGTTGGAAAATTGGGAGGATCATCAGCAGCAAATATTGATTCCACAGTCGTATCCGAGGGTTAATCCTGTTGTTGACAGTAATATTATAAAGCAAGAGGTTAATTCCCAGAACAACAGCAACTTGTGTGGTGGAGATGGAGGAGAAGAATTTCAGGCACCTTATAATAATAGGCCATCTTGGTCAGCAGCACAAATCAACATGCCAGTTTCATCCCCTAGGTCTTGTATCACTAGTTTAAGTAGTAATAATATCTTGGACTTTTCCTATAACCAGAAAAACCAACATGCAGATCACTCATCTGAGTGCAATAGTCCTCCCACCGGCGGAATGTGCAAGAAAGCTAGGGTTCAACCATCTCCAAGCCAACCACCATTAAAGGTGAGAAAGGAGAAGCTAGGAGATAGAATAACAGCCCTTCATCAAATAGTTTCCCCATTTGGAAAGACTGACACTGCTTCTGTCTTGTTAGAAGCCATTGGGTATATCAGATTCCTCCAGAGTCAAATTGAGGCCCTCAGCTCCCCTTACTTGGGCAATGCCTCCAAAAACATGAGGAATAATCCCCACTCTGTAAGTTCCCATACTTTTGCATACCGATCCCATTTTCCAAAGCATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.08

Weight (kDa)

7.77

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 308, 384
AccB1I GGYRCC 1 cut(s) 376
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 2 cut(s) 162, 546
AclWI GGATC 3 cut(s) 82, 246, 813
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 542, 545, 751, 752
AgsI TTSAA 2 cut(s) 202, 572
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 4 cut(s) 97, 563, 616, 741
AluI AGCT 4 cut(s) 97, 563, 616, 741
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 3 cut(s) 82, 246, 813
Aor13HI TCCGGA 1 cut(s) 170
AoxI GGCC 3 cut(s) 6, 392, 732
ApeKI GCWGC 2 cut(s) 247, 407
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 369
AspA2I CCTAGG 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 733
AsuHPI GGTGA 1 cut(s) 613
AvrII CCTAGG 1 cut(s) 437
BaeI ACNNNNGTAYC 2 cut(s) 254, 287
BanI GGYRCC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 2 cut(s) 93, 737
BbvI GCAGC 2 cut(s) 259, 419
BccI CCATC 3 cut(s) 350, 403, 583
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 282
BclI TGATCA 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 4 cut(s) 438, 453, 564, 617
BfmI CTRYAG 1 cut(s) 125
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 2 cut(s) 248, 408
BlnI CCTAGG 1 cut(s) 437
BlsI GCNGC 2 cut(s) 249, 409
Bme1390I CCNGG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 2 cut(s) 146, 378
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 2 cut(s) 93, 737
BsaJI CCNNGG 3 cut(s) 157, 275, 437
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 4 cut(s) 542, 545, 751, 752
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 2 cut(s) 26, 425
Bse3DI GCAATG 1 cut(s) 763
BseAI TCCGGA 1 cut(s) 170
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 157, 275, 437
BseGI GGATG 2 cut(s) 34, 431
BseLI CCNNNNNNNGG 4 cut(s) 542, 545, 751, 752
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 3 cut(s) 107, 513, 751
BseNI ACTGG 2 cut(s) 26, 425
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 259, 419
BshFI GGCC 3 cut(s) 8, 394, 734
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 9, 171, 543
BslI CCNNNNNNNGG 4 cut(s) 542, 545, 751, 752
BsnI GGCC 3 cut(s) 8, 394, 734
Bsp1286I GDGCHC 1 cut(s) 32
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 6 cut(s) 74, 112, 178, 238, 511, 818
BspACI CCGC 2 cut(s) 162, 546
BspANI GGCC 3 cut(s) 8, 394, 734
BspCNI CTCAG 3 cut(s) 106, 514, 750
BspEI TCCGGA 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 146, 378
BspPI GGATC 3 cut(s) 82, 246, 813
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 2 cut(s) 26, 425
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 3 cut(s) 157, 275, 437
BssMI GATC 6 cut(s) 74, 112, 178, 238, 511, 818
BssT1I CCWWGG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 3 cut(s) 42, 267, 299
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 93, 522, 737
BstF5I GGATG 2 cut(s) 34, 431
BstKTI GATC 6 cut(s) 77, 115, 181, 241, 514, 821
BstMBI GATC 6 cut(s) 74, 112, 178, 238, 511, 818
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 424, 509
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 259, 419
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 1 cut(s) 74
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 3 cut(s) 8, 394, 734
BtsCI GGATG 2 cut(s) 34, 431
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 733
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 3 cut(s) 421, 506, 772
DdeI CTNAG 3 cut(s) 93, 522, 737
DpnI GATC 6 cut(s) 76, 114, 180, 240, 513, 820
DpnII GATC 6 cut(s) 74, 112, 178, 238, 511, 818
EaeI YGGCCR 1 cut(s) 6
EciI GGCGGA 2 cut(s) 177, 561
Eco130I CCWWGG 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 733
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 424, 509, 775
FatI CATG 3 cut(s) 420, 505, 771
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 248, 408
FokI GGATG 2 cut(s) 21, 418
Fsp4HI GCNGC 2 cut(s) 248, 408
FspBI CTAG 4 cut(s) 438, 453, 564, 617
GluI GCNGC 2 cut(s) 248, 408
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 3 cut(s) 8, 394, 734
HapII CCGG 3 cut(s) 9, 171, 543
Hin1II CATG 3 cut(s) 424, 509, 775
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 4 cut(s) 202, 259, 711, 721
HpaII CCGG 3 cut(s) 9, 171, 543
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 276, 523, 710
Hpy188III TCNNGA 3 cut(s) 171, 182, 718
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 66, 647
HpyCH4III ACNGT 3 cut(s) 42, 267, 299
HpyCH4V TGCA 4 cut(s) 509, 528, 555, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
HpyF3I CTNAG 3 cut(s) 93, 522, 737
Hsp92II CATG 3 cut(s) 424, 509, 775
Kpn2I TCCGGA 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 6 cut(s) 74, 112, 178, 238, 511, 818
LmnI GCTCC 3 cut(s) 27, 144, 746
Lsp1109I GCAGC 2 cut(s) 259, 419
LweI GCATC 1 cut(s) 43
MaeI CTAG 4 cut(s) 438, 453, 564, 617
MalI GATC 6 cut(s) 76, 114, 180, 240, 513, 820
MboI GATC 6 cut(s) 74, 112, 178, 238, 511, 818
MboII GAAGA 4 cut(s) 43, 69, 188, 377
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 7 cut(s) 82, 100, 149, 229, 322, 368, 726
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 1 cut(s) 204
MroI TCCGGA 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 4 cut(s) 282, 321, 458, 596
MslI CAYNNNNRTG 1 cut(s) 523
MspI CCGG 3 cut(s) 9, 171, 543
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 552
NdeII GATC 6 cut(s) 74, 112, 178, 238, 511, 818
NlaIII CATG 3 cut(s) 424, 509, 775
NlaIV GGNNCC 2 cut(s) 146, 378
NspI RCATGY 2 cut(s) 424, 509
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 202, 259, 711
PkrI GCNGC 2 cut(s) 249, 409
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
PsiI TTATAA 2 cut(s) 308, 384
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 146, 378
PspPI GGNCC 1 cut(s) 733
PsuI RGATCY 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 523
SaqAI TTAA 4 cut(s) 282, 321, 458, 596
SatI GCNGC 2 cut(s) 248, 408
Sau3AI GATC 6 cut(s) 74, 112, 178, 238, 511, 818
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 125
SgrAI CRCCGGYG 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 523
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 7 cut(s) 82, 100, 149, 229, 322, 368, 726
SsiI CCGC 2 cut(s) 162, 546
SspI AATATT 2 cut(s) 255, 304
SspMI CTAG 4 cut(s) 438, 453, 564, 617
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 3 cut(s) 42, 267, 299
TasI AATT 7 cut(s) 82, 100, 149, 229, 322, 368, 726
TfiI GAWTC 3 cut(s) 202, 259, 711
Tru1I TTAA 4 cut(s) 282, 321, 458, 596
Tru9I TTAA 4 cut(s) 282, 321, 458, 596
TscAI CASTG 1 cut(s) 679
TseI GCWGC 2 cut(s) 247, 407
TspDTI ATGAA 3 cut(s) 93, 420, 629
TspRI CASTG 1 cut(s) 679
XapI RAATTY 1 cut(s) 368
XceI RCATGY 2 cut(s) 424, 509
XmaJI CCTAGG 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 4 cut(s) 438, 453, 564, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.