Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001178

Physical Location & Seq

Genomic Coordinates Reverse (-)

2992820 .. 2996918

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04600.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAATAGAGGTGGTTGCCAGAGCTCACCGGTGCAACAAATGATGGCCGGAAACCCTAATTGGTGGAGTATCAACAGCATGAGGCCACCAAGTACCCAACCATCTATGAATATTTCTCCTTTCTTTCATCCCCCTTCTCCTCTTCCTCCTAATTTTTTAATCCCACAATTTGCACCCAACAACAACAACAACACTTCCCCCCCTTCTTCAACAATTTCTTCTTCAGGACTTGGCATTCCTTCTTGGCATATTGAAAATAACAACCAGGAGCTTCCAGAGTCTTGGAGCCAACTTCTCTTGGGTGGATTGGTAGGTGAAGATGAGAAAGGGGTAATCATGAGACAATTTCATCAAGCTGCTAAGAAATTGGAAAATTGGGAGGAGCAAGTATTAAATAGCACTCAAGCTCCAAATGCTCCTGCTGTGGACGTGAAGCAAGAAAACTCAGGAAGCAGCGGTGGCTTTATGTACGGACATCATCATCACGGGAATGATCACATCCAAGATTTTAACCCATCAGCTGCAGCTTTGTCTTGTTTGTCTCAGATTATGCAATCAACTACTCCATCTGCAGCCTCATCTCCTAAGTCATCGTGTGTGACGAGTTTCAGCAACAACAATATGTTGGATTTTTCTAGCAAGTCGGAAGTGAGGCATCCACCACCACATCGATCCTCTGATCAGTGTAACAATGGTGGGGCGCTTAAGAGAGCAAGGGTTCAACCTTCTTCAACCCCTACTACCTTCAAGGTGAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAGCTAGTTTCTCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTACATCAGATTCCTTCAGAGTCAAATTGAGGCCCTCAGTTTACCTTACTTGGGCAGTGGATCAGGAAACATCCGGCAGCAGCCACAGTCTGCAGTTCATGGGGAGAGGAATTGTATGTTCCCTGAAGATCCTGGTCAGCTGCTCAATGACAATTGCATGAAGAGGAAGGGAGCTTCTGAGCAGGATCGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

37.91

Weight (kDa)

7.19

Isoelectric Point (pI)

66.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20100 AT2G20100 AT2G20100 AT2G20100 AT4G29100 AT4G29100
fragaria_vesca	FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900
malus_domestica	MD02G1056800.v1.1 MD09G1208300.v1.1 MD15G1191400.v1.1 MD17G1190000.v1.1
prunus_persica	Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.7G225800_v2.0.a1
pyrus_communis	pycom02g04600 pycom09g12450 pycom15g17140 pycom17g19760
rosa_chinensis	RchiOBHm_Chr2g0091241 RchiOBHm_Chr2g0139261
rosa_laevigata	RLG00000016195 RLG00000019800
rosa_multiflora	Rmu_sc0002270.1_g000018 Rmu_sc0002525.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105520 Rroxscaffold_2G00150350
rosa_rugosa	Rorug02G0014700 Rorug02G0014800 Rorug02G0356100 Rorug02G0356200 Rorug02G0356300 Rorug02G0356400 Rorug02G0356500 Rorug02G0356600
rosa_samantha	Rh2AG060500 Rh2AG406100 Rh2BG059200 Rh2BG416700 Rh2CG061000 Rh2CG392400 Rh2DG059800 Rh2DG425800
rosa_wichuraiana	Rw2G004940 Rw2G032910 Rw2G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	4 cut(s)	666, 919, 974, 1044
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	3 cut(s)	207, 851, 996
AfaI	GTAC	3 cut(s)	94, 470, 854
AfiI	CCNNNNNNNGG	1 cut(s)	902
AflII	CTTAAG	1 cut(s)	704
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	5 cut(s)	210, 254, 722, 732, 748
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	264, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	334, 546
AlwI	GGATC	4 cut(s)	666, 919, 974, 1044
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	3 cut(s)	45, 83, 882
ApeKI	GCWGC	8 cut(s)	356, 453, 521, 524, 572, 928, 931, 991
AsiGI	ACCGGT	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	883
AsuHPI	GGTGA	4 cut(s)	18, 326, 763, 782
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	8 cut(s)	343, 465, 508, 536, 584, 940, 943, 978
BccI	CCATC	4 cut(s)	37, 109, 523, 574
BciT130I	CCWGG	2 cut(s)	266, 984
BclI	TGATCA	2 cut(s)	493, 679
BcoDI	GTCTC	2 cut(s)	334, 546
BfaI	CTAG	2 cut(s)	636, 797
BfmI	CTRYAG	3 cut(s)	522, 570, 942
BfoI	RGCGCY	1 cut(s)	704
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	8 cut(s)	357, 454, 522, 525, 573, 929, 932, 992
BlsI	GCNGC	8 cut(s)	358, 455, 523, 526, 574, 930, 933, 993
Bme1390I	CCNGG	2 cut(s)	266, 984
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	883
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	266, 984
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	670
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse118I	RCCGGY	1 cut(s)	28
BseBI	CCWGG	2 cut(s)	266, 984
BseCI	ATCGAT	1 cut(s)	670
BseGI	GGATG	4 cut(s)	127, 498, 655, 921
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMII	CTCAG	4 cut(s)	459, 557, 901, 1020
BseRI	GAGGAG	2 cut(s)	129, 395
BseXI	GCAGC	8 cut(s)	343, 465, 508, 536, 584, 940, 943, 978
BshFI	GGCC	3 cut(s)	47, 85, 884
BshTI	ACCGGT	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	29, 48, 925
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	2 cut(s)	334, 546
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	47, 85, 884
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	3 cut(s)	47, 85, 884
BspCNI	CTCAG	4 cut(s)	458, 556, 900, 1021
BspDI	ATCGAT	1 cut(s)	670
BspHI	TCATGA	2 cut(s)	336, 1043
BspLI	GGNNCC	1 cut(s)	287
BspMAI	CTGCAG	3 cut(s)	526, 574, 946
BspPI	GGATC	4 cut(s)	666, 919, 974, 1044
BspTI	CTTAAG	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
Bst2UI	CCWGG	2 cut(s)	266, 984
Bst4CI	ACNGT	1 cut(s)	939
Bst6I	CTCTTC	2 cut(s)	147, 1007
BstAFI	CTTAAG	1 cut(s)	704
BstDEI	CTNAG	6 cut(s)	360, 445, 543, 585, 887, 1029
BstF5I	GGATG	4 cut(s)	127, 498, 655, 921
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	6 cut(s)	496, 674, 682, 914, 982, 1039
BstMAI	GTCTC	2 cut(s)	334, 546
BstMBI	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 459
BstNI	CCWGG	2 cut(s)	266, 984
BstSCI	CCNGG	2 cut(s)	264, 982
BstSFI	CTRYAG	3 cut(s)	522, 570, 942
BstV1I	GCAGC	8 cut(s)	343, 465, 508, 536, 584, 940, 943, 978
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	979
BstXI	CCANNNNNNTGG	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	979
Bsu15I	ATCGAT	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	47, 85, 884
BsuTUI	ATCGAT	1 cut(s)	670
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	4 cut(s)	127, 498, 655, 921
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	2 cut(s)	689, 913
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	2 cut(s)	336, 1043
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	883
ClaI	ATCGAT	1 cut(s)	670
Csp6I	GTAC	3 cut(s)	93, 469, 853
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	5 cut(s)	79, 337, 950, 1009, 1044
CviQI	GTAC	3 cut(s)	93, 469, 853
DdeI	CTNAG	6 cut(s)	360, 445, 543, 585, 887, 1029
DpnI	GATC	6 cut(s)	495, 673, 681, 913, 981, 1038
DpnII	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	147, 1007
EarI	CTCTTC	2 cut(s)	147, 1007
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	3 cut(s)	207, 851, 996
EcoICRI	GAGCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	264, 982
EcoT38I	GRGCYC	1 cut(s)	26
FaeI	CATG	5 cut(s)	82, 340, 953, 1012, 1047
FatI	CATG	5 cut(s)	78, 336, 949, 1008, 1043
FbaI	TGATCA	2 cut(s)	493, 679
Fnu4HI	GCNGC	8 cut(s)	357, 454, 522, 525, 573, 929, 932, 992
FokI	GGATG	4 cut(s)	114, 485, 642, 908
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	8 cut(s)	357, 454, 522, 525, 573, 929, 932, 992
FspBI	CTAG	2 cut(s)	636, 797
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	8 cut(s)	357, 454, 522, 525, 573, 929, 932, 992
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	3 cut(s)	47, 85, 884
HapII	CCGG	3 cut(s)	29, 48, 925
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	5 cut(s)	82, 340, 953, 1012, 1047
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HinfI	GANTC	3 cut(s)	278, 861, 871
HpaII	CCGG	3 cut(s)	29, 48, 925
HphI	GGTGA	4 cut(s)	18, 326, 763, 782
Hpy166II	GTNNAC	2 cut(s)	427, 893
Hpy188I	TCNGA	6 cut(s)	546, 646, 679, 860, 870, 1030
Hpy188III	TCNNGA	6 cut(s)	225, 275, 337, 447, 915, 1044
Hpy8I	GTNNAC	2 cut(s)	427, 893
HpyAV	CCTTC	9 cut(s)	144, 213, 249, 735, 751, 754, 797, 875, 1012
HpyCH4III	ACNGT	1 cut(s)	939
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	7 cut(s)	34, 173, 524, 553, 572, 944, 1008
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 459
HpyF3I	CTNAG	6 cut(s)	360, 445, 543, 585, 887, 1029
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	5 cut(s)	82, 340, 953, 1012, 1047
HspAI	GCGC	1 cut(s)	701
Ksp22I	TGATCA	2 cut(s)	493, 679
Kzo9I	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
LmnI	GCTCC	6 cut(s)	268, 285, 382, 412, 421, 1022
Lsp1109I	GCAGC	8 cut(s)	343, 465, 508, 536, 584, 940, 943, 978
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	2 cut(s)	636, 797
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	598, 686, 770
MalI	GATC	6 cut(s)	495, 673, 681, 913, 981, 1038
MboI	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
MboII	GAAGA	9 cut(s)	134, 198, 210, 213, 329, 720, 826, 989, 1024
MfeI	CAATTG	1 cut(s)	1003
MflI	RGATCY	1 cut(s)	979
MhlI	GDGCHC	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	287, 880
MmeI	TCCRAC	2 cut(s)	606, 624
MseI	TTAA	4 cut(s)	158, 392, 510, 705
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	3 cut(s)	456, 521, 991
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	3 cut(s)	29, 48, 925
MspR9I	CCNGG	2 cut(s)	266, 984
MunI	CAATTG	1 cut(s)	1003
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	2 cut(s)	266, 984
MwoI	GCNNNNNNNGC	2 cut(s)	413, 459
NdeII	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
NlaIII	CATG	5 cut(s)	82, 340, 953, 1012, 1047
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	2 cut(s)	598, 770
PagI	TCATGA	2 cut(s)	336, 1043
PcsI	WCGNNNNNNNCGW	1 cut(s)	599
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	861
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	8 cut(s)	358, 455, 523, 526, 574, 930, 933, 993
PleI	GAGTC	2 cut(s)	286, 879
PpsI	GAGTC	2 cut(s)	286, 879
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	264, 982
PspGI	CCWGG	2 cut(s)	264, 982
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	883
PstI	CTGCAG	3 cut(s)	526, 574, 946
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	979
PvuII	CAGCTG	2 cut(s)	521, 991
RsaI	GTAC	3 cut(s)	94, 470, 854
RsaNI	GTAC	3 cut(s)	93, 469, 853
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	158, 392, 510, 705
SatI	GCNGC	8 cut(s)	357, 454, 522, 525, 573, 929, 932, 992
Sau3AI	GATC	6 cut(s)	493, 671, 679, 911, 979, 1036
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	2 cut(s)	287, 880
ScrFI	CCNGG	2 cut(s)	266, 984
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	3 cut(s)	522, 570, 942
SgrAI	CRCCGGYG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	402, 704
SmoI	CTYRAG	2 cut(s)	402, 704
SsiI	CCGC	1 cut(s)	456
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	636, 797
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	264, 982
TaaI	ACNGT	1 cut(s)	939
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	670
TfiI	GAWTC	1 cut(s)	861
Tru1I	TTAA	4 cut(s)	158, 392, 510, 705
Tru9I	TTAA	4 cut(s)	158, 392, 510, 705
TscAI	CASTG	2 cut(s)	689, 913
TseFI	GTSAC	2 cut(s)	598, 770
TseI	GCWGC	8 cut(s)	356, 453, 521, 524, 572, 928, 931, 991
Tsp45I	GTSAC	2 cut(s)	598, 770
TspDTI	ATGAA	7 cut(s)	17, 116, 122, 338, 779, 938, 1025
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	689, 913
Vha464I	CTTAAG	1 cut(s)	704
XspI	CTAG	2 cut(s)	636, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.