AT4G29100

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14340951 .. 14345013
4063 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29100.2

Sequence Viewer

Length: 1224 bp
ATGAATAGAGGTGTGTTGGAGAGTTCGCCGGTTCAGCAGCTGATGGCAGCCGGAAACCCTAATTGGTGGAACGTAAGCGGCGGCATGAGGCCACCACCACCGTTGATGGGTCATCAGCAGGCGCCGTTGCCACCACATATGACTCCTAATAACAATTATCTCCGACCACGGATGATGCCCACTCCCTTCCCGCACTTCTTGCCATCTCCGGCGACTTCTTCTTCTTCCTCTTCTTCTTCACCGTCTTTGCCTAATAACCCTAATCTCTCTTCTTGGCTTGAAAGCAATGATCTCCCTCCTGAGTCTTGGAGCCTTAGCCAACTTCTTTTGGGTGGATTGATGATGGGAGAGGAAGAGAGATTGGAGATGATGAACCATCATAATCATCATGATGAACAACAACACCATGGTTTTCAAGGGAAGATAAGATTGGAGAATTGGGAAGAACAAGTGTTAAGCCACCAACAAGCTTCCATGGTGGCTGTTGACATCAAACAAGAGGGTAACATTAACAACAACAATGGCTATGTCATATCTTCCCCGAACTCACCTCCTAACAAATCTTGTGTTACAACAACTACCACAACAAGCCTCAATAGTAACGACGATAACATCAACAACAATAATAATATGTTGGATTTCTCTAGCAATCACAATGGTCTTCACTTGTCAGAAGGGAGACACACTCCTCCGGATCGATCCTCTGAGTGTAACAGCTTAGAGATTGGTGGGTCTACTAATAAGAAGCCAAGGCTCCAACCTTCTCCTTCGTCACAATCAACCCTCAAGGTGAGAAAGGAGAAACTAGGAGGCCGAATCGCAGCGCTTCATCAGCTAGTATCTCCATTTGGAAAGACTGACACAGCCTCTGTCCTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGGCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGATCTGAGAAGTCGAGGTTTATGTCTTGTCCCAATCTCATGCACACTCCAAGTAGGCAGCGACAACGGCGCGGACTATTGGGCTCCAGCACTTGGCTCCGCCGGTTTCCATTGA

Protein Analysis

407

Amino Acids

44.58

Weight (kDa)

6.3

Isoelectric Point (pI)

68.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 121, 969
AccB7I CCANNNNNTGG 2 cut(s) 941, 1202
AccI GTMKAC 1 cut(s) 734
AccII CGCG 1 cut(s) 1181
AccIII TCCGGA 1 cut(s) 691
AciI CCGC 5 cut(s) 78, 81, 191, 1181, 1209
AclWI GGATC 2 cut(s) 693, 702
AcuI CTGAAG 1 cut(s) 890
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 1 cut(s) 946
AfeI AGCGCT 1 cut(s) 825
AfiI CCNNNNNNNGG 3 cut(s) 107, 941, 1202
AgsI TTSAA 2 cut(s) 281, 416
AjnI CCWGG 1 cut(s) 1018
AjuI GAANNNNNNNTTGG 4 cut(s) 46, 78, 413, 445
AluBI AGCT 7 cut(s) 40, 470, 717, 835, 884, 1027, 1061
AluI AGCT 7 cut(s) 40, 470, 717, 835, 884, 1027, 1061
Alw26I GTCTC 1 cut(s) 673
AlwI GGATC 2 cut(s) 693, 702
AlwNI CAGNNNCTG 2 cut(s) 40, 869
Ama87I CYCGRG 1 cut(s) 955
Aor13HI TCCGGA 1 cut(s) 691
Aor51HI AGCGCT 1 cut(s) 825
AoxI GGCC 2 cut(s) 89, 811
ApeKI GCWGC 4 cut(s) 37, 47, 821, 1167
AspLEI GCGC 3 cut(s) 124, 826, 1181
AspS9I GGNCC 1 cut(s) 1015
AsuHPI GGTGA 3 cut(s) 231, 540, 802
AvaI CYCGRG 1 cut(s) 955
AvaII GGWCC 1 cut(s) 1015
AxyI CCTNAGG 1 cut(s) 1011
BanI GGYRCC 2 cut(s) 121, 969
BanII GRGCYC 1 cut(s) 1195
BauI CACGAG 1 cut(s) 1028
BbsI GAAGAC 1 cut(s) 653
BbvI GCAGC 4 cut(s) 49, 59, 833, 1179
BccI CCATC 5 cut(s) 37, 100, 211, 337, 384
BceAI ACGGC 2 cut(s) 109, 1192
BciT130I CCWGG 1 cut(s) 1020
BciVI GTATCC 1 cut(s) 884
BcoDI GTCTC 1 cut(s) 673
BfaI CTAG 3 cut(s) 645, 806, 836
BfoI RGCGCY 2 cut(s) 125, 827
BfuI GTATCC 1 cut(s) 884
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 6 cut(s) 38, 48, 79, 82, 822, 1168
BlsI GCNGC 6 cut(s) 39, 49, 80, 83, 823, 1169
Bme1390I CCNGG 1 cut(s) 1020
Bme18I GGWCC 1 cut(s) 1015
BmeT110I CYCGRG 1 cut(s) 955
BmgT120I GGNCC 1 cut(s) 1015
BmiI GGNNCC 7 cut(s) 123, 311, 755, 971, 1017, 1194, 1207
BmrFI CCNGG 1 cut(s) 1020
BmsI GCATC 1 cut(s) 165
BoxI GACNNNNGTC 1 cut(s) 1020
BpiI GAAGAC 1 cut(s) 653
BplI GAGNNNNNCTC 2 cut(s) 670, 702
BpmI CTGGAG 1 cut(s) 1179
Bpu10I CCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 770
Bsa29I ATCGAT 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 6 cut(s) 167, 406, 474, 749, 954, 1018
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 941, 1202
Bse118I RCCGGY 2 cut(s) 28, 1211
Bse21I CCTNAGG 1 cut(s) 1011
Bse3DI GCAATG 1 cut(s) 292
BseAI TCCGGA 1 cut(s) 691
BseBI CCWGG 1 cut(s) 1020
BseCI ATCGAT 1 cut(s) 697
BseDI CCNNGG 6 cut(s) 167, 406, 474, 749, 954, 1018
BseGI GGATG 2 cut(s) 177, 931
BseLI CCNNNNNNNGG 3 cut(s) 107, 941, 1202
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 5 cut(s) 291, 696, 917, 1002, 1106
BseRI GAGGAG 2 cut(s) 678, 1071
BseXI GCAGC 4 cut(s) 49, 59, 833, 1179
Bsh1236I CGCG 1 cut(s) 1181
BshFI GGCC 2 cut(s) 91, 813
BshNI GGYRCC 2 cut(s) 121, 969
BshVI ATCGAT 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 955
BsiSI CCGG 5 cut(s) 29, 51, 209, 692, 1212
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 3 cut(s) 107, 941, 1202
BsmAI GTCTC 1 cut(s) 673
BsmFI GGGAC 1 cut(s) 1124
BsnI GGCC 2 cut(s) 91, 813
BsoBI CYCGRG 1 cut(s) 955
Bsp1286I GDGCHC 1 cut(s) 1195
Bsp13I TCCGGA 1 cut(s) 691
Bsp143I GATC 5 cut(s) 289, 694, 698, 1036, 1111
Bsp19I CCATGG 2 cut(s) 406, 474
BspACI CCGC 5 cut(s) 78, 81, 191, 1181, 1209
BspANI GGCC 2 cut(s) 91, 813
BspCNI CTCAG 5 cut(s) 292, 697, 918, 1003, 1107
BspDI ATCGAT 1 cut(s) 697
BspEI TCCGGA 1 cut(s) 691
BspFNI CGCG 1 cut(s) 1181
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 7 cut(s) 123, 311, 755, 971, 1017, 1194, 1207
BspPI GGATC 2 cut(s) 693, 702
BspQI GCTCTTC 1 cut(s) 1092
BspT107I GGYRCC 2 cut(s) 121, 969
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 2 cut(s) 28, 1211
BssAI RCCGGY 2 cut(s) 28, 1211
BssECI CCNNGG 6 cut(s) 167, 406, 474, 749, 954, 1018
BssMI GATC 5 cut(s) 289, 694, 698, 1036, 1111
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 1028
BssT1I CCWWGG 3 cut(s) 406, 474, 749
Bst2BI CACGAG 1 cut(s) 1028
Bst2UI CCWGG 1 cut(s) 1020
Bst4CI ACNGT 2 cut(s) 102, 243
Bst6I CTCTTC 6 cut(s) 235, 274, 348, 1043, 1048, 1092
BstACI GRCGYC 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 8 cut(s) 300, 314, 705, 718, 926, 1011, 1104, 1115
BstDSI CCRYGG 3 cut(s) 167, 406, 474
BstF5I GGATG 2 cut(s) 177, 931
BstFNI CGCG 1 cut(s) 1181
BstH2I RGCGCY 2 cut(s) 125, 827
BstHHI GCGC 3 cut(s) 124, 826, 1181
BstKTI GATC 5 cut(s) 292, 697, 701, 1039, 1114
BstMAI GTCTC 1 cut(s) 673
BstMBI GATC 5 cut(s) 289, 694, 698, 1036, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 34, 199, 832, 1176
BstNI CCWGG 1 cut(s) 1020
BstPAI GACNNNNGTC 1 cut(s) 1020
BstSCI CCNGG 1 cut(s) 1018
BstUI CGCG 1 cut(s) 1181
BstV1I GCAGC 4 cut(s) 49, 59, 833, 1179
BstV2I GAAGAC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 1111
BstYI RGATCY 1 cut(s) 1111
Bsu15I ATCGAT 1 cut(s) 697
Bsu36I CCTNAGG 1 cut(s) 1011
BsuI GTATCC 1 cut(s) 884
BsuRI GGCC 2 cut(s) 91, 813
BsuTUI ATCGAT 1 cut(s) 697
BtgI CCRYGG 3 cut(s) 167, 406, 474
BtsCI GGATG 2 cut(s) 177, 931
BtsIMutI CAGTG 1 cut(s) 1046
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 2 cut(s) 40, 869
CciI TCATGA 1 cut(s) 388
CfoI GCGC 3 cut(s) 124, 826, 1181
Cfr10I RCCGGY 2 cut(s) 28, 1211
Cfr13I GGNCC 1 cut(s) 1015
ClaI ATCGAT 1 cut(s) 697
Csp6I GTAC 1 cut(s) 945
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 6 cut(s) 85, 389, 407, 475, 1045, 1149
CviQI GTAC 1 cut(s) 945
DdeI CTNAG 8 cut(s) 300, 314, 705, 718, 926, 1011, 1104, 1115
DinI GGCGCC 1 cut(s) 123
DpnI GATC 5 cut(s) 291, 696, 700, 1038, 1113
DpnII GATC 5 cut(s) 289, 694, 698, 1036, 1111
Eam1104I CTCTTC 6 cut(s) 235, 274, 348, 1043, 1048, 1092
EarI CTCTTC 6 cut(s) 235, 274, 348, 1043, 1048, 1092
EciI GGCGGA 1 cut(s) 1198
Eco130I CCWWGG 3 cut(s) 406, 474, 749
Eco24I GRGCYC 1 cut(s) 1195
Eco47I GGWCC 1 cut(s) 1015
Eco47III AGCGCT 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 890
Eco81I CCTNAGG 1 cut(s) 1011
Eco88I CYCGRG 1 cut(s) 955
EcoO109I RGGNCCY 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 1018
EcoT14I CCWWGG 3 cut(s) 406, 474, 749
EcoT38I GRGCYC 1 cut(s) 1195
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 3 cut(s) 406, 474, 749
FaeI CATG 6 cut(s) 88, 392, 410, 478, 1048, 1152
FalI AAGNNNNNCTT 2 cut(s) 1045, 1077
FaqI GGGAC 1 cut(s) 1124
FatI CATG 6 cut(s) 84, 388, 406, 474, 1044, 1148
FauI CCCGC 1 cut(s) 198
FauNDI CATATG 1 cut(s) 138
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 6 cut(s) 38, 48, 79, 82, 822, 1168
FokI GGATG 2 cut(s) 184, 918
FriOI GRGCYC 1 cut(s) 1195
Fsp4HI GCNGC 6 cut(s) 38, 48, 79, 82, 822, 1168
FspBI CTAG 3 cut(s) 645, 806, 836
GlaI GCGC 3 cut(s) 123, 825, 1180
GluI GCNGC 6 cut(s) 38, 48, 79, 82, 822, 1168
GsuI CTGGAG 1 cut(s) 1179
HaeII RGCGCY 2 cut(s) 125, 827
HaeIII GGCC 2 cut(s) 91, 813
HapII CCGG 5 cut(s) 29, 51, 209, 692, 1212
HhaI GCGC 3 cut(s) 124, 826, 1181
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 6 cut(s) 88, 392, 410, 478, 1048, 1152
Hin6I GCGC 3 cut(s) 122, 824, 1179
HinP1I GCGC 3 cut(s) 122, 824, 1179
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 6 cut(s) 142, 302, 816, 900, 910, 928
HpaII CCGG 5 cut(s) 29, 51, 209, 692, 1212
HphI GGTGA 3 cut(s) 231, 540, 802
Hpy166II GTNNAC 3 cut(s) 487, 735, 1033
Hpy188I TCNGA 7 cut(s) 164, 673, 706, 880, 909, 927, 1116
Hpy188III TCNNGA 5 cut(s) 299, 389, 692, 1010, 1030
Hpy8I GTNNAC 3 cut(s) 487, 735, 1033
Hpy99I CGWCG 2 cut(s) 608, 1069
HpyAV CCTTC 5 cut(s) 196, 668, 771, 777, 914
HpyCH4III ACNGT 2 cut(s) 102, 243
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 985, 1002, 1044, 1091, 1152
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 199, 832, 1176
HpyF3I CTNAG 8 cut(s) 300, 314, 705, 718, 926, 1011, 1104, 1115
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 6 cut(s) 88, 392, 410, 478, 1048, 1152
HspAI GCGC 3 cut(s) 122, 824, 1179
KasI GGCGCC 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 691
Kzo9I GATC 5 cut(s) 289, 694, 698, 1036, 1111
LguI GCTCTTC 1 cut(s) 1092
LmnI GCTCC 5 cut(s) 309, 759, 1058, 1198, 1211
Lsp1109I GCAGC 4 cut(s) 49, 59, 833, 1179
LweI GCATC 1 cut(s) 165
MaeI CTAG 3 cut(s) 645, 806, 836
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 5 cut(s) 503, 568, 599, 710, 771
MalI GATC 5 cut(s) 291, 696, 700, 1038, 1113
MboI GATC 5 cut(s) 289, 694, 698, 1036, 1111
MflI RGATCY 1 cut(s) 1111
MhlI GDGCHC 1 cut(s) 1195
MluCI AATT 4 cut(s) 61, 154, 436, 915
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 4 cut(s) 136, 311, 919, 937
MmeI TCCRAC 4 cut(s) 187, 615, 781, 858
MroI TCCGGA 1 cut(s) 691
MseI TTAA 2 cut(s) 455, 510
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 5 cut(s) 29, 51, 209, 692, 1212
MspR9I CCNGG 1 cut(s) 1020
MvaI CCWGG 1 cut(s) 1020
MvnI CGCG 1 cut(s) 1181
MwoI GCNNNNNNNGC 4 cut(s) 34, 199, 832, 1176
NarI GGCGCC 1 cut(s) 122
NcoI CCATGG 2 cut(s) 406, 474
NdeI CATATG 1 cut(s) 138
NdeII GATC 5 cut(s) 289, 694, 698, 1036, 1111
NlaIII CATG 6 cut(s) 88, 392, 410, 478, 1048, 1152
NlaIV GGNNCC 7 cut(s) 123, 311, 755, 971, 1017, 1194, 1207
NmuCI GTSAC 1 cut(s) 771
PagI TCATGA 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 1092
PfeI GAWTC 2 cut(s) 816, 900
PflMI CCANNNNNTGG 2 cut(s) 941, 1202
PkrI GCNGC 6 cut(s) 39, 49, 80, 83, 823, 1169
PleI GAGTC 4 cut(s) 136, 310, 918, 936
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 4 cut(s) 136, 310, 918, 936
PpuMI RGGWCCY 1 cut(s) 1015
PshAI GACNNNNGTC 1 cut(s) 1020
Psp5II RGGWCCY 1 cut(s) 1015
Psp6I CCWGG 1 cut(s) 1018
PspGI CCWGG 1 cut(s) 1018
PspN4I GGNNCC 7 cut(s) 123, 311, 755, 971, 1017, 1194, 1207
PspPI GGNCC 1 cut(s) 1015
PspPPI RGGWCCY 1 cut(s) 1015
PstNI CAGNNNCTG 2 cut(s) 40, 869
PsuI RGATCY 1 cut(s) 1111
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 946
RsaNI GTAC 1 cut(s) 945
RseI CAYNNNNRTG 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 1092
SaqAI TTAA 2 cut(s) 455, 510
SatI GCNGC 6 cut(s) 38, 48, 79, 82, 822, 1168
Sau3AI GATC 5 cut(s) 289, 694, 698, 1036, 1111
Sau96I GGNCC 1 cut(s) 1015
SchI GAGTC 4 cut(s) 136, 311, 919, 937
ScrFI CCNGG 1 cut(s) 1020
SduI GDGCHC 1 cut(s) 1195
SfaNI GCATC 1 cut(s) 165
SfoI GGCGCC 1 cut(s) 123
SinI GGWCC 1 cut(s) 1015
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 4 cut(s) 61, 154, 436, 915
SsiI CCGC 5 cut(s) 78, 81, 191, 1181, 1209
SspDI GGCGCC 1 cut(s) 121
SspMI CTAG 3 cut(s) 645, 806, 836
StyD4I CCNGG 1 cut(s) 1018
StyI CCWWGG 3 cut(s) 406, 474, 749
TaaI ACNGT 2 cut(s) 102, 243
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 697, 1123
TasI AATT 4 cut(s) 61, 154, 436, 915
TauI GCSGC 2 cut(s) 81, 84
TfiI GAWTC 2 cut(s) 816, 900
Tru1I TTAA 2 cut(s) 455, 510
Tru9I TTAA 2 cut(s) 455, 510
TscAI CASTG 1 cut(s) 1046
TseFI GTSAC 1 cut(s) 771
TseI GCWGC 4 cut(s) 37, 47, 821, 1167
Tsp45I GTSAC 1 cut(s) 771
TspDTI ATGAA 5 cut(s) 17, 386, 408, 818, 1061
TspGWI ACGGA 2 cut(s) 184, 1091
TspRI CASTG 1 cut(s) 1046
Van91I CCANNNNNTGG 2 cut(s) 941, 1202
VpaK11BI GGWCC 1 cut(s) 1015
XmiI GTMKAC 1 cut(s) 734
XspI CTAG 3 cut(s) 645, 806, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.