transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 121, 969 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 941, 1202 |
| AccI | GTMKAC | 1 cut(s) | 734 |
| AccII | CGCG | 1 cut(s) | 1181 |
| AccIII | TCCGGA | 1 cut(s) | 691 |
| AciI | CCGC | 5 cut(s) | 78, 81, 191, 1181, 1209 |
| AclWI | GGATC | 2 cut(s) | 693, 702 |
| AcuI | CTGAAG | 1 cut(s) | 890 |
| AcyI | GRCGYC | 1 cut(s) | 122 |
| AfaI | GTAC | 1 cut(s) | 946 |
| AfeI | AGCGCT | 1 cut(s) | 825 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 107, 941, 1202 |
| AgsI | TTSAA | 2 cut(s) | 281, 416 |
| AjnI | CCWGG | 1 cut(s) | 1018 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 46, 78, 413, 445 |
| AluBI | AGCT | 7 cut(s) | 40, 470, 717, 835, 884, 1027, 1061 |
| AluI | AGCT | 7 cut(s) | 40, 470, 717, 835, 884, 1027, 1061 |
| Alw26I | GTCTC | 1 cut(s) | 673 |
| AlwI | GGATC | 2 cut(s) | 693, 702 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 40, 869 |
| Ama87I | CYCGRG | 1 cut(s) | 955 |
| Aor13HI | TCCGGA | 1 cut(s) | 691 |
| Aor51HI | AGCGCT | 1 cut(s) | 825 |
| AoxI | GGCC | 2 cut(s) | 89, 811 |
| ApeKI | GCWGC | 4 cut(s) | 37, 47, 821, 1167 |
| AspLEI | GCGC | 3 cut(s) | 124, 826, 1181 |
| AspS9I | GGNCC | 1 cut(s) | 1015 |
| AsuHPI | GGTGA | 3 cut(s) | 231, 540, 802 |
| AvaI | CYCGRG | 1 cut(s) | 955 |
| AvaII | GGWCC | 1 cut(s) | 1015 |
| AxyI | CCTNAGG | 1 cut(s) | 1011 |
| BanI | GGYRCC | 2 cut(s) | 121, 969 |
| BanII | GRGCYC | 1 cut(s) | 1195 |
| BauI | CACGAG | 1 cut(s) | 1028 |
| BbsI | GAAGAC | 1 cut(s) | 653 |
| BbvI | GCAGC | 4 cut(s) | 49, 59, 833, 1179 |
| BccI | CCATC | 5 cut(s) | 37, 100, 211, 337, 384 |
| BceAI | ACGGC | 2 cut(s) | 109, 1192 |
| BciT130I | CCWGG | 1 cut(s) | 1020 |
| BciVI | GTATCC | 1 cut(s) | 884 |
| BcoDI | GTCTC | 1 cut(s) | 673 |
| BfaI | CTAG | 3 cut(s) | 645, 806, 836 |
| BfoI | RGCGCY | 2 cut(s) | 125, 827 |
| BfuI | GTATCC | 1 cut(s) | 884 |
| BglII | AGATCT | 1 cut(s) | 1111 |
| BisI | GCNGC | 6 cut(s) | 38, 48, 79, 82, 822, 1168 |
| BlsI | GCNGC | 6 cut(s) | 39, 49, 80, 83, 823, 1169 |
| Bme1390I | CCNGG | 1 cut(s) | 1020 |
| Bme18I | GGWCC | 1 cut(s) | 1015 |
| BmeT110I | CYCGRG | 1 cut(s) | 955 |
| BmgT120I | GGNCC | 1 cut(s) | 1015 |
| BmiI | GGNNCC | 7 cut(s) | 123, 311, 755, 971, 1017, 1194, 1207 |
| BmrFI | CCNGG | 1 cut(s) | 1020 |
| BmsI | GCATC | 1 cut(s) | 165 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1020 |
| BpiI | GAAGAC | 1 cut(s) | 653 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 670, 702 |
| BpmI | CTGGAG | 1 cut(s) | 1179 |
| Bpu10I | CCTNAGC | 1 cut(s) | 314 |
| BpuEI | CTTGAG | 1 cut(s) | 770 |
| Bsa29I | ATCGAT | 1 cut(s) | 697 |
| BsaHI | GRCGYC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 6 cut(s) | 167, 406, 474, 749, 954, 1018 |
| BsaWI | WCCGGW | 1 cut(s) | 691 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 107, 941, 1202 |
| Bse118I | RCCGGY | 2 cut(s) | 28, 1211 |
| Bse21I | CCTNAGG | 1 cut(s) | 1011 |
| Bse3DI | GCAATG | 1 cut(s) | 292 |
| BseAI | TCCGGA | 1 cut(s) | 691 |
| BseBI | CCWGG | 1 cut(s) | 1020 |
| BseCI | ATCGAT | 1 cut(s) | 697 |
| BseDI | CCNNGG | 6 cut(s) | 167, 406, 474, 749, 954, 1018 |
| BseGI | GGATG | 2 cut(s) | 177, 931 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 107, 941, 1202 |
| BseMI | GCAATG | 1 cut(s) | 292 |
| BseMII | CTCAG | 5 cut(s) | 291, 696, 917, 1002, 1106 |
| BseRI | GAGGAG | 2 cut(s) | 678, 1071 |
| BseXI | GCAGC | 4 cut(s) | 49, 59, 833, 1179 |
| Bsh1236I | CGCG | 1 cut(s) | 1181 |
| BshFI | GGCC | 2 cut(s) | 91, 813 |
| BshNI | GGYRCC | 2 cut(s) | 121, 969 |
| BshVI | ATCGAT | 1 cut(s) | 697 |
| BsiHKCI | CYCGRG | 1 cut(s) | 955 |
| BsiSI | CCGG | 5 cut(s) | 29, 51, 209, 692, 1212 |
| BslFI | GGGAC | 1 cut(s) | 1124 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 107, 941, 1202 |
| BsmAI | GTCTC | 1 cut(s) | 673 |
| BsmFI | GGGAC | 1 cut(s) | 1124 |
| BsnI | GGCC | 2 cut(s) | 91, 813 |
| BsoBI | CYCGRG | 1 cut(s) | 955 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1195 |
| Bsp13I | TCCGGA | 1 cut(s) | 691 |
| Bsp143I | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| Bsp19I | CCATGG | 2 cut(s) | 406, 474 |
| BspACI | CCGC | 5 cut(s) | 78, 81, 191, 1181, 1209 |
| BspANI | GGCC | 2 cut(s) | 91, 813 |
| BspCNI | CTCAG | 5 cut(s) | 292, 697, 918, 1003, 1107 |
| BspDI | ATCGAT | 1 cut(s) | 697 |
| BspEI | TCCGGA | 1 cut(s) | 691 |
| BspFNI | CGCG | 1 cut(s) | 1181 |
| BspHI | TCATGA | 1 cut(s) | 388 |
| BspLI | GGNNCC | 7 cut(s) | 123, 311, 755, 971, 1017, 1194, 1207 |
| BspPI | GGATC | 2 cut(s) | 693, 702 |
| BspQI | GCTCTTC | 1 cut(s) | 1092 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 969 |
| BsrDI | GCAATG | 1 cut(s) | 292 |
| BsrFI | RCCGGY | 2 cut(s) | 28, 1211 |
| BssAI | RCCGGY | 2 cut(s) | 28, 1211 |
| BssECI | CCNNGG | 6 cut(s) | 167, 406, 474, 749, 954, 1018 |
| BssMI | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| BssNI | GRCGYC | 1 cut(s) | 122 |
| BssSI | CACGAG | 1 cut(s) | 1028 |
| BssT1I | CCWWGG | 3 cut(s) | 406, 474, 749 |
| Bst2BI | CACGAG | 1 cut(s) | 1028 |
| Bst2UI | CCWGG | 1 cut(s) | 1020 |
| Bst4CI | ACNGT | 2 cut(s) | 102, 243 |
| Bst6I | CTCTTC | 6 cut(s) | 235, 274, 348, 1043, 1048, 1092 |
| BstACI | GRCGYC | 1 cut(s) | 122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 199 |
| BstC8I | GCNNGC | 1 cut(s) | 120 |
| BstDEI | CTNAG | 8 cut(s) | 300, 314, 705, 718, 926, 1011, 1104, 1115 |
| BstDSI | CCRYGG | 3 cut(s) | 167, 406, 474 |
| BstF5I | GGATG | 2 cut(s) | 177, 931 |
| BstFNI | CGCG | 1 cut(s) | 1181 |
| BstH2I | RGCGCY | 2 cut(s) | 125, 827 |
| BstHHI | GCGC | 3 cut(s) | 124, 826, 1181 |
| BstKTI | GATC | 5 cut(s) | 292, 697, 701, 1039, 1114 |
| BstMAI | GTCTC | 1 cut(s) | 673 |
| BstMBI | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 34, 199, 832, 1176 |
| BstNI | CCWGG | 1 cut(s) | 1020 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1020 |
| BstSCI | CCNGG | 1 cut(s) | 1018 |
| BstUI | CGCG | 1 cut(s) | 1181 |
| BstV1I | GCAGC | 4 cut(s) | 49, 59, 833, 1179 |
| BstV2I | GAAGAC | 1 cut(s) | 653 |
| BstX2I | RGATCY | 1 cut(s) | 1111 |
| BstYI | RGATCY | 1 cut(s) | 1111 |
| Bsu15I | ATCGAT | 1 cut(s) | 697 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1011 |
| BsuI | GTATCC | 1 cut(s) | 884 |
| BsuRI | GGCC | 2 cut(s) | 91, 813 |
| BsuTUI | ATCGAT | 1 cut(s) | 697 |
| BtgI | CCRYGG | 3 cut(s) | 167, 406, 474 |
| BtsCI | GGATG | 2 cut(s) | 177, 931 |
| BtsIMutI | CAGTG | 1 cut(s) | 1046 |
| Cac8I | GCNNGC | 1 cut(s) | 120 |
| CaiI | CAGNNNCTG | 2 cut(s) | 40, 869 |
| CciI | TCATGA | 1 cut(s) | 388 |
| CfoI | GCGC | 3 cut(s) | 124, 826, 1181 |
| Cfr10I | RCCGGY | 2 cut(s) | 28, 1211 |
| Cfr13I | GGNCC | 1 cut(s) | 1015 |
| ClaI | ATCGAT | 1 cut(s) | 697 |
| Csp6I | GTAC | 1 cut(s) | 945 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 84, 119 |
| CviAII | CATG | 6 cut(s) | 85, 389, 407, 475, 1045, 1149 |
| CviQI | GTAC | 1 cut(s) | 945 |
| DdeI | CTNAG | 8 cut(s) | 300, 314, 705, 718, 926, 1011, 1104, 1115 |
| DinI | GGCGCC | 1 cut(s) | 123 |
| DpnI | GATC | 5 cut(s) | 291, 696, 700, 1038, 1113 |
| DpnII | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| Eam1104I | CTCTTC | 6 cut(s) | 235, 274, 348, 1043, 1048, 1092 |
| EarI | CTCTTC | 6 cut(s) | 235, 274, 348, 1043, 1048, 1092 |
| EciI | GGCGGA | 1 cut(s) | 1198 |
| Eco130I | CCWWGG | 3 cut(s) | 406, 474, 749 |
| Eco24I | GRGCYC | 1 cut(s) | 1195 |
| Eco47I | GGWCC | 1 cut(s) | 1015 |
| Eco47III | AGCGCT | 1 cut(s) | 825 |
| Eco57I | CTGAAG | 1 cut(s) | 890 |
| Eco81I | CCTNAGG | 1 cut(s) | 1011 |
| Eco88I | CYCGRG | 1 cut(s) | 955 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1015 |
| EcoRII | CCWGG | 1 cut(s) | 1018 |
| EcoT14I | CCWWGG | 3 cut(s) | 406, 474, 749 |
| EcoT38I | GRGCYC | 1 cut(s) | 1195 |
| EgeI | GGCGCC | 1 cut(s) | 123 |
| EheI | GGCGCC | 1 cut(s) | 123 |
| ErhI | CCWWGG | 3 cut(s) | 406, 474, 749 |
| FaeI | CATG | 6 cut(s) | 88, 392, 410, 478, 1048, 1152 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1045, 1077 |
| FaqI | GGGAC | 1 cut(s) | 1124 |
| FatI | CATG | 6 cut(s) | 84, 388, 406, 474, 1044, 1148 |
| FauI | CCCGC | 1 cut(s) | 198 |
| FauNDI | CATATG | 1 cut(s) | 138 |
| FblI | GTMKAC | 1 cut(s) | 734 |
| Fnu4HI | GCNGC | 6 cut(s) | 38, 48, 79, 82, 822, 1168 |
| FokI | GGATG | 2 cut(s) | 184, 918 |
| FriOI | GRGCYC | 1 cut(s) | 1195 |
| Fsp4HI | GCNGC | 6 cut(s) | 38, 48, 79, 82, 822, 1168 |
| FspBI | CTAG | 3 cut(s) | 645, 806, 836 |
| GlaI | GCGC | 3 cut(s) | 123, 825, 1180 |
| GluI | GCNGC | 6 cut(s) | 38, 48, 79, 82, 822, 1168 |
| GsuI | CTGGAG | 1 cut(s) | 1179 |
| HaeII | RGCGCY | 2 cut(s) | 125, 827 |
| HaeIII | GGCC | 2 cut(s) | 91, 813 |
| HapII | CCGG | 5 cut(s) | 29, 51, 209, 692, 1212 |
| HhaI | GCGC | 3 cut(s) | 124, 826, 1181 |
| Hin1I | GRCGYC | 1 cut(s) | 122 |
| Hin1II | CATG | 6 cut(s) | 88, 392, 410, 478, 1048, 1152 |
| Hin6I | GCGC | 3 cut(s) | 122, 824, 1179 |
| HinP1I | GCGC | 3 cut(s) | 122, 824, 1179 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HindIII | AAGCTT | 1 cut(s) | 468 |
| HinfI | GANTC | 6 cut(s) | 142, 302, 816, 900, 910, 928 |
| HpaII | CCGG | 5 cut(s) | 29, 51, 209, 692, 1212 |
| HphI | GGTGA | 3 cut(s) | 231, 540, 802 |
| Hpy166II | GTNNAC | 3 cut(s) | 487, 735, 1033 |
| Hpy188I | TCNGA | 7 cut(s) | 164, 673, 706, 880, 909, 927, 1116 |
| Hpy188III | TCNNGA | 5 cut(s) | 299, 389, 692, 1010, 1030 |
| Hpy8I | GTNNAC | 3 cut(s) | 487, 735, 1033 |
| Hpy99I | CGWCG | 2 cut(s) | 608, 1069 |
| HpyAV | CCTTC | 5 cut(s) | 196, 668, 771, 777, 914 |
| HpyCH4III | ACNGT | 2 cut(s) | 102, 243 |
| HpyCH4IV | ACGT | 1 cut(s) | 72 |
| HpyCH4V | TGCA | 5 cut(s) | 985, 1002, 1044, 1091, 1152 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 34, 199, 832, 1176 |
| HpyF3I | CTNAG | 8 cut(s) | 300, 314, 705, 718, 926, 1011, 1104, 1115 |
| HpySE526I | ACGT | 1 cut(s) | 72 |
| Hsp92I | GRCGYC | 1 cut(s) | 122 |
| Hsp92II | CATG | 6 cut(s) | 88, 392, 410, 478, 1048, 1152 |
| HspAI | GCGC | 3 cut(s) | 122, 824, 1179 |
| KasI | GGCGCC | 1 cut(s) | 121 |
| Kpn2I | TCCGGA | 1 cut(s) | 691 |
| Kzo9I | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| LguI | GCTCTTC | 1 cut(s) | 1092 |
| LmnI | GCTCC | 5 cut(s) | 309, 759, 1058, 1198, 1211 |
| Lsp1109I | GCAGC | 4 cut(s) | 49, 59, 833, 1179 |
| LweI | GCATC | 1 cut(s) | 165 |
| MaeI | CTAG | 3 cut(s) | 645, 806, 836 |
| MaeII | ACGT | 1 cut(s) | 72 |
| MaeIII | GTNAC | 5 cut(s) | 503, 568, 599, 710, 771 |
| MalI | GATC | 5 cut(s) | 291, 696, 700, 1038, 1113 |
| MboI | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| MflI | RGATCY | 1 cut(s) | 1111 |
| MhlI | GDGCHC | 1 cut(s) | 1195 |
| MluCI | AATT | 4 cut(s) | 61, 154, 436, 915 |
| Mly113I | GGCGCC | 1 cut(s) | 122 |
| MlyI | GAGTC | 4 cut(s) | 136, 311, 919, 937 |
| MmeI | TCCRAC | 4 cut(s) | 187, 615, 781, 858 |
| MroI | TCCGGA | 1 cut(s) | 691 |
| MseI | TTAA | 2 cut(s) | 455, 510 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| MspA1I | CMGCKG | 1 cut(s) | 40 |
| MspI | CCGG | 5 cut(s) | 29, 51, 209, 692, 1212 |
| MspR9I | CCNGG | 1 cut(s) | 1020 |
| MvaI | CCWGG | 1 cut(s) | 1020 |
| MvnI | CGCG | 1 cut(s) | 1181 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 34, 199, 832, 1176 |
| NarI | GGCGCC | 1 cut(s) | 122 |
| NcoI | CCATGG | 2 cut(s) | 406, 474 |
| NdeI | CATATG | 1 cut(s) | 138 |
| NdeII | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| NlaIII | CATG | 6 cut(s) | 88, 392, 410, 478, 1048, 1152 |
| NlaIV | GGNNCC | 7 cut(s) | 123, 311, 755, 971, 1017, 1194, 1207 |
| NmuCI | GTSAC | 1 cut(s) | 771 |
| PagI | TCATGA | 1 cut(s) | 388 |
| PciSI | GCTCTTC | 1 cut(s) | 1092 |
| PfeI | GAWTC | 2 cut(s) | 816, 900 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 941, 1202 |
| PkrI | GCNGC | 6 cut(s) | 39, 49, 80, 83, 823, 1169 |
| PleI | GAGTC | 4 cut(s) | 136, 310, 918, 936 |
| PluTI | GGCGCC | 1 cut(s) | 125 |
| PpsI | GAGTC | 4 cut(s) | 136, 310, 918, 936 |
| PpuMI | RGGWCCY | 1 cut(s) | 1015 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1020 |
| Psp5II | RGGWCCY | 1 cut(s) | 1015 |
| Psp6I | CCWGG | 1 cut(s) | 1018 |
| PspGI | CCWGG | 1 cut(s) | 1018 |
| PspN4I | GGNNCC | 7 cut(s) | 123, 311, 755, 971, 1017, 1194, 1207 |
| PspPI | GGNCC | 1 cut(s) | 1015 |
| PspPPI | RGGWCCY | 1 cut(s) | 1015 |
| PstNI | CAGNNNCTG | 2 cut(s) | 40, 869 |
| PsuI | RGATCY | 1 cut(s) | 1111 |
| PvuII | CAGCTG | 1 cut(s) | 40 |
| RsaI | GTAC | 1 cut(s) | 946 |
| RsaNI | GTAC | 1 cut(s) | 945 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SapI | GCTCTTC | 1 cut(s) | 1092 |
| SaqAI | TTAA | 2 cut(s) | 455, 510 |
| SatI | GCNGC | 6 cut(s) | 38, 48, 79, 82, 822, 1168 |
| Sau3AI | GATC | 5 cut(s) | 289, 694, 698, 1036, 1111 |
| Sau96I | GGNCC | 1 cut(s) | 1015 |
| SchI | GAGTC | 4 cut(s) | 136, 311, 919, 937 |
| ScrFI | CCNGG | 1 cut(s) | 1020 |
| SduI | GDGCHC | 1 cut(s) | 1195 |
| SfaNI | GCATC | 1 cut(s) | 165 |
| SfoI | GGCGCC | 1 cut(s) | 123 |
| SinI | GGWCC | 1 cut(s) | 1015 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 1 cut(s) | 785 |
| SmoI | CTYRAG | 1 cut(s) | 785 |
| Sse9I | AATT | 4 cut(s) | 61, 154, 436, 915 |
| SsiI | CCGC | 5 cut(s) | 78, 81, 191, 1181, 1209 |
| SspDI | GGCGCC | 1 cut(s) | 121 |
| SspMI | CTAG | 3 cut(s) | 645, 806, 836 |
| StyD4I | CCNGG | 1 cut(s) | 1018 |
| StyI | CCWWGG | 3 cut(s) | 406, 474, 749 |
| TaaI | ACNGT | 2 cut(s) | 102, 243 |
| TaiI | ACGT | 1 cut(s) | 75 |
| TaqI | TCGA | 2 cut(s) | 697, 1123 |
| TasI | AATT | 4 cut(s) | 61, 154, 436, 915 |
| TauI | GCSGC | 2 cut(s) | 81, 84 |
| TfiI | GAWTC | 2 cut(s) | 816, 900 |
| Tru1I | TTAA | 2 cut(s) | 455, 510 |
| Tru9I | TTAA | 2 cut(s) | 455, 510 |
| TscAI | CASTG | 1 cut(s) | 1046 |
| TseFI | GTSAC | 1 cut(s) | 771 |
| TseI | GCWGC | 4 cut(s) | 37, 47, 821, 1167 |
| Tsp45I | GTSAC | 1 cut(s) | 771 |
| TspDTI | ATGAA | 5 cut(s) | 17, 386, 408, 818, 1061 |
| TspGWI | ACGGA | 2 cut(s) | 184, 1091 |
| TspRI | CASTG | 1 cut(s) | 1046 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 941, 1202 |
| VpaK11BI | GGWCC | 1 cut(s) | 1015 |
| XmiI | GTMKAC | 1 cut(s) | 734 |
| XspI | CTAG | 3 cut(s) | 645, 806, 836 |