Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001178

Physical Location & Seq

Genomic Coordinates Reverse (-)

12032832 .. 12034749

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17140.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAATAGAGGTGGTTGCCAGAGCTCACCGGTGCAACAAATGATTGCCGGAACCCCTAACTGGTGGAGTATCAACAGCATGAGGCCACCAAGTACCCAACCATCTATGAATATTTCTCCTTTTTTTCAGCCTCCTCCTCCTCTTCCTTCTAATTTTTTAATCCCACAATTTGCACCCAGCAACAACAACACTTCCCCTTCTTCAACAACTTCTTCTTCAGGACTTGCCATTCCTTCTTGGCATATTGAGAATAACATCCAGGAGCTTCCAGAGTCTTGGAGCCACCTCCTCTTGGGTGGAATTGTAGGTGAAGATGAGAAGGAGGCAATCATGAGACAATTTCATCAAGCTGCTAAGAAATTGGAAAATTGGGAGGAGCAAATATTAAATAGCGCTCAAGCTCCAAATGCTCCTGCTGTGGACGTGAAGCAAGAAAACTCAGGAAATAGCAACGGCTTTGTGTACGGACATCATCAGGGGAATGATCACATCCGAGATTTTAATCCATCAGCTGCAGCTTTGTCTTCTTTGTCTCAGATTATGCAGTCAACTGCTGCCTCTGCAGCCTCATCTCCTAAGTCATCGTGTGTGACGAGTTTCAGCAACAACAATATGTTGGATTTTTCTAGCAAGTCGGACGTGAGGCATCCACCACCACATCGGTCCTCTGATCAGTTTAAGGTGGGGCACTTAAGAGAGCAAGGGTTCAGCCTTCTTCAACCCCAACTACCTTCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.82

Weight (kDa)

6.29

Isoelectric Point (pI)

66.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20100 AT2G20100 AT2G20100 AT2G20100 AT4G29100 AT4G29100
fragaria_vesca	FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900
malus_domestica	MD02G1056800.v1.1 MD09G1208300.v1.1 MD15G1191400.v1.1 MD17G1190000.v1.1
prunus_persica	Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.7G225800_v2.0.a1
pyrus_communis	pycom02g04600 pycom09g12450 pycom15g17140 pycom17g19760
rosa_chinensis	RchiOBHm_Chr2g0091241 RchiOBHm_Chr2g0139261
rosa_laevigata	RLG00000016195 RLG00000019800
rosa_multiflora	Rmu_sc0002270.1_g000018 Rmu_sc0002525.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105520 Rroxscaffold_2G00150350
rosa_rugosa	Rorug02G0014700 Rorug02G0014800 Rorug02G0356100 Rorug02G0356200 Rorug02G0356300 Rorug02G0356400 Rorug02G0356500 Rorug02G0356600
rosa_samantha	Rh2AG060500 Rh2AG406100 Rh2BG059200 Rh2BG416700 Rh2CG061000 Rh2CG392400 Rh2DG059800 Rh2DG425800
rosa_wichuraiana	Rw2G004940 Rw2G032910 Rw2G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	94, 464
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	2 cut(s)	60, 292
AflII	CTTAAG	1 cut(s)	691
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	204, 719, 735
AjiI	CACGTC	2 cut(s)	424, 640
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	6 cut(s)	24, 265, 350, 401, 512, 518
AluI	AGCT	6 cut(s)	24, 265, 350, 401, 512, 518
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	328, 537
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	5 cut(s)	350, 512, 515, 554, 563
AsiGI	ACCGGT	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	18, 320
AvaII	GGWCC	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	5 cut(s)	337, 499, 527, 541, 575
BccI	CCATC	2 cut(s)	109, 514
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	2 cut(s)	484, 670
BcoDI	GTCTC	2 cut(s)	328, 537
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	2 cut(s)	513, 561
BfoI	RGCGCY	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	691
BisI	GCNGC	5 cut(s)	351, 513, 516, 555, 564
BlsI	GCNGC	5 cut(s)	352, 514, 517, 556, 565
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	663
BmgBI	CACGTC	2 cut(s)	424, 640
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	2 cut(s)	52, 281
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	501
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 292
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	3 cut(s)	255, 489, 646
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	60, 292
BseMII	CTCAG	2 cut(s)	453, 548
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	5 cut(s)	123, 126, 129, 278, 389
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	5 cut(s)	337, 499, 527, 541, 575
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	29, 48
BslI	CCNNNNNNNGG	2 cut(s)	60, 292
BsmAI	GTCTC	2 cut(s)	328, 537
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	26, 690
Bsp143I	GATC	2 cut(s)	484, 670
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	2 cut(s)	452, 547
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	52, 281
BspMAI	CTGCAG	2 cut(s)	517, 565
BspTI	CTTAAG	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	2 cut(s)	484, 670
Bst2UI	CCWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	691
BstDEI	CTNAG	4 cut(s)	354, 439, 534, 576
BstF5I	GGATG	3 cut(s)	255, 489, 646
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	2 cut(s)	487, 673
BstMAI	GTCTC	2 cut(s)	328, 537
BstMBI	GATC	2 cut(s)	484, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 560, 563
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	2 cut(s)	513, 561
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	5 cut(s)	337, 499, 527, 541, 575
BstV2I	GAAGAC	1 cut(s)	516
BstXI	CCANNNNNNTGG	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	85
BtrI	CACGTC	2 cut(s)	424, 640
BtsCI	GGATG	3 cut(s)	255, 489, 646
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	663
Csp6I	GTAC	2 cut(s)	93, 463
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	2 cut(s)	79, 331
CviQI	GTAC	2 cut(s)	93, 463
DdeI	CTNAG	4 cut(s)	354, 439, 534, 576
DpnI	GATC	2 cut(s)	486, 672
DpnII	GATC	2 cut(s)	484, 670
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	663
Eco47III	AGCGCT	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	26
FaeI	CATG	2 cut(s)	82, 334
FaiI	YATR	6 cut(s)	80, 107, 243, 332, 542, 614
FatI	CATG	2 cut(s)	78, 330
FbaI	TGATCA	2 cut(s)	484, 670
Fnu4HI	GCNGC	5 cut(s)	351, 513, 516, 555, 564
FokI	GGATG	3 cut(s)	242, 476, 633
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	351, 513, 516, 555, 564
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	5 cut(s)	351, 513, 516, 555, 564
GsaI	CCCAGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	2 cut(s)	29, 48
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	82, 334
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	2 cut(s)	29, 48
HphI	GGTGA	2 cut(s)	18, 320
Hpy166II	GTNNAC	3 cut(s)	421, 463, 549
Hpy188I	TCNGA	4 cut(s)	494, 537, 637, 670
Hpy188III	TCNNGA	4 cut(s)	219, 269, 331, 441
Hpy8I	GTNNAC	3 cut(s)	421, 463, 549
HpyAV	CCTTC	6 cut(s)	156, 207, 243, 313, 722, 741
HpyCH4IV	ACGT	2 cut(s)	423, 639
HpyCH4V	TGCA	5 cut(s)	34, 173, 515, 544, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 560, 563
HpyF3I	CTNAG	4 cut(s)	354, 439, 534, 576
HpySE526I	ACGT	2 cut(s)	423, 639
Hsp92II	CATG	2 cut(s)	82, 334
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	484, 670
Kzo9I	GATC	2 cut(s)	484, 670
LmnI	GCTCC	5 cut(s)	262, 279, 376, 406, 415
Lsp1109I	GCAGC	5 cut(s)	337, 499, 527, 541, 575
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	423, 639
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	2 cut(s)	486, 672
MboI	GATC	2 cut(s)	484, 670
MboII	GAAGA	7 cut(s)	134, 192, 204, 207, 323, 516, 707
MhlI	GDGCHC	2 cut(s)	26, 690
MluCI	AATT	6 cut(s)	151, 167, 300, 338, 359, 367
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	597, 615
MseI	TTAA	5 cut(s)	158, 386, 501, 678, 692
MspA1I	CMGCKG	1 cut(s)	512
MspCI	CTTAAG	1 cut(s)	691
MspI	CCGG	2 cut(s)	29, 48
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	407, 560, 563
NdeII	GATC	2 cut(s)	484, 670
NlaIII	CATG	2 cut(s)	82, 334
NlaIV	GGNNCC	2 cut(s)	52, 281
NmuCI	GTSAC	1 cut(s)	589
PagI	TCATGA	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	258
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	352, 514, 517, 556, 565
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	52, 281
PspPI	GGNCC	1 cut(s)	663
PstI	CTGCAG	2 cut(s)	517, 565
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	2 cut(s)	94, 464
RsaNI	GTAC	2 cut(s)	93, 463
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	5 cut(s)	158, 386, 501, 678, 692
SatI	GCNGC	5 cut(s)	351, 513, 516, 555, 564
Sau3AI	GATC	2 cut(s)	484, 670
Sau96I	GGNCC	1 cut(s)	663
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	26, 690
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	513, 561
SgrAI	CRCCGGYG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	396, 691
SmoI	CTYRAG	2 cut(s)	396, 691
Sse9I	AATT	6 cut(s)	151, 167, 300, 338, 359, 367
SspI	AATATT	2 cut(s)	112, 384
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	258
TaiI	ACGT	2 cut(s)	426, 642
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	6 cut(s)	151, 167, 300, 338, 359, 367
Tru1I	TTAA	5 cut(s)	158, 386, 501, 678, 692
Tru9I	TTAA	5 cut(s)	158, 386, 501, 678, 692
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	5 cut(s)	350, 512, 515, 554, 563
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	17, 122, 332
TspGWI	ACGGA	1 cut(s)	480
Vha464I	CTTAAG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	663
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.