pycom17g19760
BHLH Family

Transcription factor bHLH68-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001178
Physical Location & Seq
Forward (+)
17723804 .. 17726357
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g19760.3

Sequence Viewer

Length: 828 bp
ATGATGGCTGGAAACCCTAACTGGTGGAGCAGTATGCATCCACCATCTCTCTTCCCTTCTCAATATGTGCAGCTTGGATCTCCTAATTCACTCCCTCTGCCTGACCATAACCTAGAGCCTCCACAATCCTGGAGCCAGTTACTATTGGGTGGATTGTCCAGCCAGGAAGATACCTTTGGTACTCTGAGTCATAATTTTCAACCTAAAAGTAGGTTGGAAAGTTGGGAGGAGGACCAAATCTTGATTACACAATATCCAAGGGCTCCTCTTCCTCCTCATGGTGTTGATAGTATTATAAAGCAAGAGGCTAACTCCCAGACCAGCATTAACTTATTGGGCAGTAGTCCTCATGGAGATGAAGAATTTCAGTTGCAGGCACCTAGCAGCTGCAGGCCTGTTTGGTCCCCAGTTCAAACCATGCCAGTTTCATCCCCTAGGTCTTGTGTCACTAGTTTAAGTAATACTAATAATATATTGGACTTCTCCTATAACAAAACTGACAATAAGAGGAACCAACATGCAGATCACTCATCTGAGTGTAATAGCACTGCCACTGGTGGGACAAGCAAGAAGGCCAGGGTTCAACAATCTCCAAGCCAACCACCTCTCAAGGTGAGGAAGGAGAAGCTGGGTGATAGGATAACATCCCTTCACCAACTAGTTTCCCCGTTTGGGAAGACTGACACTGCTTCAGTCTTGTTAGAAGCCATTGGGTATATCAGATTCCTTCAGGGTCAAATTGAGGCCCTCAGCTCCCCTTACTTGGGCAATGCCTCAAAAAACACGAGGAAGCAACAGAATCGCAAGATCATAAGGCAAAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.51

Weight (kDa)

8.97

Isoelectric Point (pI)

72.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 376
AclWI GGATC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 2 cut(s) 675, 713
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 5 cut(s) 278, 558, 672, 763, 764
AgsI TTSAA 3 cut(s) 200, 413, 584
AhlI ACTAGT 2 cut(s) 449, 658
AjnI CCWGG 3 cut(s) 128, 162, 575
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 4 cut(s) 73, 387, 628, 753
AluI AGCT 4 cut(s) 73, 387, 628, 753
AlwI GGATC 1 cut(s) 85
AoxI GGCC 3 cut(s) 392, 573, 744
ApeKI GCWGC 3 cut(s) 70, 384, 387
ApoI RAATTY 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 363
AspA2I CCTAGG 1 cut(s) 434
AspS9I GGNCC 3 cut(s) 232, 402, 745
AsuHPI GGTGA 3 cut(s) 625, 644, 644
AvaII GGWCC 2 cut(s) 232, 402
AvrII CCTAGG 1 cut(s) 434
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 265
BauI CACGAG 1 cut(s) 784
BbsI GAAGAC 1 cut(s) 683
BbvCI CCTCAGC 1 cut(s) 749
BbvI GCAGC 3 cut(s) 82, 374, 396
BccI CCATC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 782, 816
BciT130I CCWGG 3 cut(s) 130, 164, 577
BcuI ACTAGT 2 cut(s) 449, 658
BfaI CTAG 5 cut(s) 113, 381, 435, 450, 659
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 3 cut(s) 71, 385, 388
BlnI CCTAGG 1 cut(s) 434
BlsI GCNGC 3 cut(s) 72, 386, 389
Bme1390I CCNGG 3 cut(s) 130, 164, 577
Bme18I GGWCC 2 cut(s) 232, 402
BmgT120I GGNCC 3 cut(s) 232, 402, 745
BmiI GGNNCC 5 cut(s) 134, 264, 378, 404, 512
BmrFI CCNGG 3 cut(s) 130, 164, 577
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 593
BsaJI CCNNGG 3 cut(s) 257, 434, 576
Bsc4I CCNNNNNNNGG 5 cut(s) 278, 558, 672, 763, 764
Bse1I ACTGG 5 cut(s) 26, 136, 407, 422, 559
Bse3DI GCAATG 1 cut(s) 775
BseBI CCWGG 3 cut(s) 130, 164, 577
BseDI CCNNGG 3 cut(s) 257, 434, 576
BseGI GGATG 3 cut(s) 37, 428, 644
BseLI CCNNNNNNNGG 5 cut(s) 278, 558, 672, 763, 764
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 3 cut(s) 176, 525, 763
BseNI ACTGG 5 cut(s) 26, 136, 407, 422, 559
BseRI GAGGAG 3 cut(s) 242, 255, 264
BseXI GCAGC 3 cut(s) 82, 374, 396
BseYI CCCAGC 1 cut(s) 628
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 3 cut(s) 394, 575, 746
BshNI GGYRCC 1 cut(s) 376
BslFI GGGAC 2 cut(s) 388, 574
BslI CCNNNNNNNGG 5 cut(s) 278, 558, 672, 763, 764
BsmFI GGGAC 2 cut(s) 388, 574
BsnI GGCC 3 cut(s) 394, 575, 746
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 4 cut(s) 77, 523, 807, 822
BspANI GGCC 3 cut(s) 394, 575, 746
BspCNI CTCAG 3 cut(s) 177, 526, 762
BspLI GGNNCC 5 cut(s) 134, 264, 378, 404, 512
BspMAI CTGCAG 1 cut(s) 392
BspPI GGATC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 775
BsrI ACTGG 5 cut(s) 26, 136, 407, 422, 559
BssECI CCNNGG 3 cut(s) 257, 434, 576
BssMI GATC 4 cut(s) 77, 523, 807, 822
BssSI CACGAG 1 cut(s) 784
BssT1I CCWWGG 2 cut(s) 257, 434
Bst2BI CACGAG 1 cut(s) 784
Bst2UI CCWGG 3 cut(s) 130, 164, 577
Bst6I CTCTTC 2 cut(s) 56, 273
BstC8I GCNNGC 2 cut(s) 375, 392
BstDEI CTNAG 3 cut(s) 185, 534, 749
BstF5I GGATG 3 cut(s) 37, 428, 644
BstKTI GATC 4 cut(s) 80, 526, 810, 825
BstMBI GATC 4 cut(s) 77, 523, 807, 822
BstNI CCWGG 3 cut(s) 130, 164, 577
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 128, 162, 575
BstSFI CTRYAG 1 cut(s) 388
BstV1I GCAGC 3 cut(s) 82, 374, 396
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 2 cut(s) 77, 822
BstXI CCANNNNNNTGG 1 cut(s) 129
BstYI RGATCY 2 cut(s) 77, 822
BsuRI GGCC 3 cut(s) 394, 575, 746
BtsCI GGATG 3 cut(s) 37, 428, 644
BtsI GCAGTG 2 cut(s) 546, 684
BtsIMutI CAGTG 3 cut(s) 546, 552, 684
Cac8I GCNNGC 2 cut(s) 375, 392
Cfr13I GGNCC 3 cut(s) 232, 402, 745
Csp6I GTAC 1 cut(s) 180
CviAII CATG 4 cut(s) 278, 350, 418, 518
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 3 cut(s) 185, 534, 749
DpnI GATC 4 cut(s) 79, 525, 809, 824
DpnII GATC 4 cut(s) 77, 523, 807, 822
Eam1104I CTCTTC 2 cut(s) 56, 273
EarI CTCTTC 2 cut(s) 56, 273
Eco130I CCWWGG 2 cut(s) 257, 434
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 2 cut(s) 232, 402
Eco57I CTGAAG 2 cut(s) 675, 713
EcoO109I RGGNCCY 1 cut(s) 745
EcoRII CCWGG 3 cut(s) 128, 162, 575
EcoT14I CCWWGG 2 cut(s) 257, 434
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 257, 434
FaeI CATG 4 cut(s) 281, 353, 421, 521
FaqI GGGAC 2 cut(s) 388, 574
FatI CATG 4 cut(s) 277, 349, 417, 517
Fnu4HI GCNGC 3 cut(s) 71, 385, 388
FokI GGATG 3 cut(s) 24, 415, 631
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 71, 385, 388
FspBI CTAG 5 cut(s) 113, 381, 435, 450, 659
GluI GCNGC 3 cut(s) 71, 385, 388
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 3 cut(s) 394, 575, 746
Hin1II CATG 4 cut(s) 281, 353, 421, 521
HinfI GANTC 3 cut(s) 187, 723, 799
HphI GGTGA 3 cut(s) 625, 644, 644
Hpy188I TCNGA 3 cut(s) 186, 535, 722
Hpy188III TCNNGA 1 cut(s) 241
HpyAV CCTTC 5 cut(s) 66, 565, 613, 659, 737
HpyCH4V TGCA 5 cut(s) 37, 70, 373, 390, 521
HpyF3I CTNAG 3 cut(s) 185, 534, 749
Hsp92II CATG 4 cut(s) 281, 353, 421, 521
Kzo9I GATC 4 cut(s) 77, 523, 807, 822
LmnI GCTCC 4 cut(s) 27, 132, 268, 758
Lsp1109I GCAGC 3 cut(s) 82, 374, 396
LweI GCATC 1 cut(s) 46
MaeI CTAG 5 cut(s) 113, 381, 435, 450, 659
MaeIII GTNAC 2 cut(s) 138, 445
MalI GATC 4 cut(s) 79, 525, 809, 824
MboI GATC 4 cut(s) 77, 523, 807, 822
MboII GAAGA 5 cut(s) 43, 179, 260, 371, 688
MflI RGATCY 2 cut(s) 77, 822
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 4 cut(s) 85, 193, 362, 738
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 195
Mph1103I ATGCAT 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 327, 455
MslI CAYNNNNRTG 2 cut(s) 354, 535
MspA1I CMGCKG 1 cut(s) 387
MspR9I CCNGG 3 cut(s) 130, 164, 577
MvaI CCWGG 3 cut(s) 130, 164, 577
NdeII GATC 4 cut(s) 77, 523, 807, 822
NlaIII CATG 4 cut(s) 281, 353, 421, 521
NlaIV GGNNCC 5 cut(s) 134, 264, 378, 404, 512
NmuCI GTSAC 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 39
NspI RCATGY 1 cut(s) 521
PceI AGGCCT 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 723, 799
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 3 cut(s) 72, 386, 389
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PsiI TTATAA 1 cut(s) 296
Psp6I CCWGG 3 cut(s) 128, 162, 575
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 3 cut(s) 128, 162, 575
PspN4I GGNNCC 5 cut(s) 134, 264, 378, 404, 512
PspPI GGNCC 3 cut(s) 232, 402, 745
PstI CTGCAG 1 cut(s) 392
PsuI RGATCY 2 cut(s) 77, 822
PvuII CAGCTG 1 cut(s) 387
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 2 cut(s) 354, 535
SaqAI TTAA 2 cut(s) 327, 455
SatI GCNGC 3 cut(s) 71, 385, 388
Sau3AI GATC 4 cut(s) 77, 523, 807, 822
Sau96I GGNCC 3 cut(s) 232, 402, 745
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 3 cut(s) 130, 164, 577
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 2 cut(s) 232, 402
SmiMI CAYNNNNRTG 2 cut(s) 354, 535
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SpeI ACTAGT 2 cut(s) 449, 658
Sse9I AATT 4 cut(s) 85, 193, 362, 738
SseBI AGGCCT 1 cut(s) 394
SspMI CTAG 5 cut(s) 113, 381, 435, 450, 659
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 3 cut(s) 128, 162, 575
StyI CCWWGG 2 cut(s) 257, 434
TasI AATT 4 cut(s) 85, 193, 362, 738
TfiI GAWTC 2 cut(s) 723, 799
Tru1I TTAA 2 cut(s) 327, 455
Tru9I TTAA 2 cut(s) 327, 455
TscAI CASTG 3 cut(s) 553, 559, 691
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 70, 384, 387
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 372, 417
TspRI CASTG 3 cut(s) 553, 559, 691
VpaK11BI GGWCC 2 cut(s) 232, 402
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 521
XmaJI CCTAGG 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 5 cut(s) 113, 381, 435, 450, 659
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.