Rorug02G0356100
BHLH Family

Transcription factor bHLH68-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001178
Physical Location & Seq
Reverse (-)
44973554 .. 44974360
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0356100.1

Sequence Viewer

Length: 408 bp
ATGGTGGCGCTGATCTTGCCGGTGCCGAATCAGGCCTCCATCTTGAGATTCTTCTTGCATGTAGACTCCTCAGTGACGAGTTCGAAGTCGAAATTGGTTTGCTCGGAGTTTATGTTGAACTTCCGGCATAGAGCTGCGACTTCGATCACGTTGGCCTTCACCTTGATGGTGACGCCGTTTGGGGTGTCCCTGGTCTCCAAAGACAAAACCAAAGCCACCATCCGCGCCACCTCTAGCCTCTTGTATGCAGGGTTACAGAAAACCTGGTTTCTGAAGCACGAAGATAATGGTTATGCCCCAAAACCTTCACCACCGCCACCTCTGAACCCTGGACCAACACCAGTACCAATTTCAAAAGATCTCCTATCAGAGAGAGCTCCTCCAAGTCCATACATAGCTTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.66

Weight (kDa)

9.87

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 223, 314
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 1 cut(s) 345
AgsI TTSAA 2 cut(s) 118, 354
AjnI CCWGG 3 cut(s) 189, 263, 328
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 4 cut(s) 134, 377, 398, 404
AluI AGCT 4 cut(s) 134, 377, 398, 404
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 2 cut(s) 33, 153
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 2 cut(s) 10, 227
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 151, 181, 300
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 332
BaeI ACNNNNGTAYC 2 cut(s) 327, 360
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 47, 160, 227
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 3 cut(s) 191, 265, 330
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 234
BfoI RGCGCY 1 cut(s) 11
BglII AGATCT 1 cut(s) 358
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 3 cut(s) 191, 265, 330
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 3 cut(s) 191, 265, 330
BplI GAGNNNNNCTC 2 cut(s) 364, 396
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 189, 328
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 341
BseBI CCWGG 3 cut(s) 191, 265, 330
BseDI CCNNGG 2 cut(s) 189, 328
BseGI GGATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 58, 369
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 35, 155
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 2 cut(s) 20, 124
BslFI GGGAC 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 35, 155
Bso31I GGTCTC 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 3 cut(s) 12, 144, 358
BspACI CCGC 2 cut(s) 223, 314
BspANI GGCC 2 cut(s) 35, 155
BspCNI CTCAG 1 cut(s) 83
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 189, 328
BssMI GATC 3 cut(s) 12, 144, 358
BssNI GRCGYC 1 cut(s) 173
Bst2UI CCWGG 3 cut(s) 191, 265, 330
BstACI GRCGYC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 2 cut(s) 10, 227
BstKTI GATC 3 cut(s) 15, 147, 361
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 3 cut(s) 12, 144, 358
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 3 cut(s) 191, 265, 330
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 3 cut(s) 189, 263, 328
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 2 cut(s) 35, 155
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 2 cut(s) 10, 227
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 332
CseI GACGC 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 263
Csp6I GTAC 1 cut(s) 344
CviAII CATG 1 cut(s) 59
CviJI RGCY 8 cut(s) 35, 134, 155, 215, 237, 377, 398, 404
CviKI_1 RGCY 8 cut(s) 35, 134, 155, 215, 237, 377, 398, 404
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 1 cut(s) 70
DpnI GATC 3 cut(s) 14, 146, 360
DpnII GATC 3 cut(s) 12, 144, 358
Ecl136II GAGCTC 1 cut(s) 377
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 189, 263, 328
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 1 cut(s) 62
FaiI YATR 7 cut(s) 60, 113, 129, 246, 294, 391, 395
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 58
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 234
GlaI GCGC 2 cut(s) 9, 226
GluI GCNGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 2 cut(s) 35, 155
HapII CCGG 2 cut(s) 20, 124
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 10, 227
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 2 cut(s) 8, 225
HinP1I GCGC 2 cut(s) 8, 225
HinfI GANTC 3 cut(s) 28, 48, 65
HpaII CCGG 2 cut(s) 20, 124
HphI GGTGA 3 cut(s) 151, 181, 300
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 106, 273, 324, 370
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 166, 315
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 58, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 2 cut(s) 8, 225
Kzo9I GATC 3 cut(s) 12, 144, 358
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 1 cut(s) 121
MabI ACCWGGT 1 cut(s) 263
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 3 cut(s) 73, 169, 252
MalI GATC 3 cut(s) 14, 146, 360
MboI GATC 3 cut(s) 12, 144, 358
MboII GAAGA 2 cut(s) 43, 293
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 2 cut(s) 92, 348
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 6 cut(s) 46, 79, 241, 248, 330, 390
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 2 cut(s) 20, 124
MspR9I CCNGG 3 cut(s) 191, 265, 330
MvaI CCWGG 3 cut(s) 191, 265, 330
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 3 cut(s) 12, 144, 358
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 2 cut(s) 73, 169
NspI RCATGY 1 cut(s) 62
NspV TTCGAA 1 cut(s) 83
PceI AGGCCT 1 cut(s) 35
PfeI GAWTC 2 cut(s) 28, 48
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 189, 263, 328
PspGI CCWGG 3 cut(s) 189, 263, 328
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 379
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 12, 144, 358
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 3 cut(s) 191, 265, 330
SduI GDGCHC 1 cut(s) 379
SexAI ACCWGGT 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 92, 348
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 2 cut(s) 223, 314
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 1 cut(s) 379
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 189, 263, 328
TaiI ACGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 83, 89, 143
TasI AATT 2 cut(s) 92, 348
TfiI GAWTC 2 cut(s) 28, 48
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 2 cut(s) 73, 169
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 73, 169
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 332
XceI RCATGY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.