Prupe.7G225800_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001178
Physical Location & Seq
Forward (+)
20020495 .. 20024534
4040 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G225800.1

Sequence Viewer

Length: 1140 bp
ATGAATAGAGGTGTTAATTTGCAGAGCTCACCGGTGCAACAAATGATGGCCGGAAACCCTAACTGGTGGAGTATCAATAGCATGAGGCCACCAACCCAGCCATCTGTTACTTCTCCTTTCTTGCCTCCTCCTCCTCCTCCTCCTTCTTTTTTCATTCCACAGTTCGTACCAAACACTTCCTCTTCTCCATCAACAACTTCTTCAGGACTTCCTTTTCCTTCTTGGCATATTGACGATAACATCCAGGAGCTTCCAGAGTCTTGGAGCCAACTCCTCTTGGGTGGATTGGTAGGCGAAGATGAGAAGGGGGCTCTCATGAGGCAATTTCATCAAGCAAAGAATAAGCTGGAGAATTGGGACGAGCAAATATTAAGTAGCACGCAGGCTCCAAATGCTCCTGCTGCTGATGTGAAGCAAGAAAGCTCGGGATGCGGCAGCTTTGTGTACGGACACCAGCAAGGGGTTAATGATCACCAACATCATCAAGATTTTCAGTCGGCGGCTTTGTCTCAAATTATGCAATCAACTGCTTCTGCCTCATCCTCTCCTAAGTCTTCTTGTGTGACGAGTTTCAACACCAGCATGTTGGATTTTTCTAGCAAGTCAGATGTGAGGCATCCTCCACCACATCGATCCTCTGACCAGTGTAACAGCACTGCAAATGGTGGTGGGGCGCTGAAGAGAGCAAGAGTTCAACCTTCTTCAACGCCAACCTTCAAGGTGAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAGCTAGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTACATCAGATTCCTTCAGAGTCAAATTGAGGCCCTCAGCTTACCTTACTTGGGCAGTGGATCAGGAAACATGCGGCAGCAGCCACAGTCTGCAGTTCATGGGGAGAGGAATTGTATGTTTCCTGAAGACCCTGGTCAGCTGCTCAATGACCATTGCATGAAGAGGAAAGGAGCTCCCGAGCAGGATGCTGATGAAGAGGCAAAGAAGGACCTGAGGAGTAGGGGGTTGTGTTTGGTTCCAGTTTCATGTACCCTCCAAGTTGGGAGCGACAACGGAGCAGACTATTGGGCTCCAGCTCTTGGCGGAGGTTTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

41.07

Weight (kDa)

6.25

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1121
AciI CCGC 4 cut(s) 432, 500, 895, 1125
AclWI GGATC 2 cut(s) 627, 889
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 4 cut(s) 186, 698, 821, 966
AfaI GTAC 4 cut(s) 168, 446, 824, 1072
AfiI CCNNNNNNNGG 4 cut(s) 460, 780, 872, 1121
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 574, 695, 705, 718
AjnI CCWGG 2 cut(s) 243, 952
Alw21I GWGCWC 2 cut(s) 29, 997
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 2 cut(s) 627, 889
AlwNI CAGNNNCTG 1 cut(s) 800
Ama87I CYCGRG 2 cut(s) 424, 998
AoxI GGCC 3 cut(s) 48, 86, 852
ApeKI GCWGC 5 cut(s) 401, 435, 898, 901, 961
AsiGI ACCGGT 1 cut(s) 31
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 2 cut(s) 853, 1030
AsuHPI GGTGA 4 cut(s) 21, 464, 733, 752
AvaI CYCGRG 2 cut(s) 424, 998
AvaII GGWCC 1 cut(s) 1030
AxyI CCTNAGG 1 cut(s) 1034
BanII GRGCYC 4 cut(s) 29, 313, 997, 1114
BbsI GAAGAC 3 cut(s) 546, 791, 954
Bbv12I GWGCWC 2 cut(s) 29, 997
BbvCI CCTCAGC 1 cut(s) 857
BbvI GCAGC 5 cut(s) 388, 447, 910, 913, 948
BccI CCATC 3 cut(s) 40, 109, 196
BcgI CGANNNNNNTGC 2 cut(s) 989, 1023
BciT130I CCWGG 2 cut(s) 245, 954
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 2 cut(s) 597, 767
BfmI CTRYAG 1 cut(s) 912
BfoI RGCGCY 1 cut(s) 677
BisI GCNGC 8 cut(s) 402, 433, 436, 501, 896, 899, 902, 962
BlsI GCNGC 8 cut(s) 403, 434, 437, 502, 897, 900, 903, 963
Bme1390I CCNGG 2 cut(s) 245, 954
Bme18I GGWCC 1 cut(s) 1030
BmeT110I CYCGRG 2 cut(s) 424, 998
BmgT120I GGNCC 2 cut(s) 853, 1030
BmiI GGNNCC 4 cut(s) 266, 387, 1059, 1113
BmrFI CCNGG 2 cut(s) 245, 954
BmsI GCATC 3 cut(s) 419, 625, 997
BoxI GACNNNNGTC 1 cut(s) 954
BpiI GAAGAC 3 cut(s) 546, 791, 954
BplI GAGNNNNNCTC 2 cut(s) 604, 636
BpmI CTGGAG 2 cut(s) 368, 1098
Bpu10I CCTNAGC 1 cut(s) 857
Bsa29I ATCGAT 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 952
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 4 cut(s) 460, 780, 872, 1121
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 4 cut(s) 68, 643, 1061, 1135
Bse21I CCTNAGG 1 cut(s) 1034
Bse3DI GCAATG 1 cut(s) 973
BseBI CCWGG 2 cut(s) 245, 954
BseCI ATCGAT 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 952
BseGI GGATG 5 cut(s) 240, 434, 539, 616, 1012
BseLI CCNNNNNNNGG 4 cut(s) 460, 780, 872, 1121
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 2 cut(s) 871, 1025
BseNI ACTGG 4 cut(s) 68, 643, 1061, 1135
BseRI GAGGAG 7 cut(s) 117, 120, 123, 126, 129, 263, 1051
BseXI GCAGC 5 cut(s) 388, 447, 910, 913, 948
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 3 cut(s) 50, 88, 854
BshTI ACCGGT 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 631
BsiHKAI GWGCWC 2 cut(s) 29, 997
BsiHKCI CYCGRG 2 cut(s) 424, 998
BsiSI CCGG 2 cut(s) 32, 51
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 4 cut(s) 460, 780, 872, 1121
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 3 cut(s) 50, 88, 854
BsoBI CYCGRG 2 cut(s) 424, 998
Bsp1286I GDGCHC 4 cut(s) 29, 313, 997, 1114
Bsp143I GATC 3 cut(s) 469, 632, 881
BspACI CCGC 4 cut(s) 432, 500, 895, 1125
BspANI GGCC 3 cut(s) 50, 88, 854
BspCNI CTCAG 2 cut(s) 870, 1026
BspDI ATCGAT 1 cut(s) 631
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 4 cut(s) 266, 387, 1059, 1113
BspMAI CTGCAG 1 cut(s) 916
BspPI GGATC 2 cut(s) 627, 889
BsrDI GCAATG 1 cut(s) 973
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 4 cut(s) 68, 643, 1061, 1135
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 952
BssMI GATC 3 cut(s) 469, 632, 881
Bst2UI CCWGG 2 cut(s) 245, 954
Bst4CI ACNGT 2 cut(s) 162, 909
Bst6I CTCTTC 4 cut(s) 187, 674, 977, 1011
BstC8I GCNNGC 2 cut(s) 380, 384
BstDEI CTNAG 3 cut(s) 549, 857, 1034
BstF5I GGATG 5 cut(s) 240, 434, 539, 616, 1012
BstH2I RGCGCY 1 cut(s) 677
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 3 cut(s) 472, 635, 884
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 3 cut(s) 469, 632, 881
BstMWI GCNNNNNNNGC 4 cut(s) 392, 401, 429, 901
BstNI CCWGG 2 cut(s) 245, 954
BstNSI RCATGY 2 cut(s) 586, 895
BstPAI GACNNNNGTC 1 cut(s) 954
BstSCI CCNGG 2 cut(s) 243, 952
BstSFI CTRYAG 1 cut(s) 912
BstV1I GCAGC 5 cut(s) 388, 447, 910, 913, 948
BstV2I GAAGAC 3 cut(s) 546, 791, 954
BstXI CCANNNNNNTGG 2 cut(s) 261, 586
Bsu15I ATCGAT 1 cut(s) 631
Bsu36I CCTNAGG 1 cut(s) 1034
BsuRI GGCC 3 cut(s) 50, 88, 854
BsuTUI ATCGAT 1 cut(s) 631
BtsCI GGATG 5 cut(s) 240, 434, 539, 616, 1012
BtsI GCAGTG 2 cut(s) 654, 883
BtsIMutI CAGTG 3 cut(s) 650, 654, 883
Cac8I GCNNGC 2 cut(s) 380, 384
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 853, 1030
ClaI ATCGAT 1 cut(s) 631
Csp6I GTAC 4 cut(s) 167, 445, 823, 1071
CspAI ACCGGT 1 cut(s) 31
CviAII CATG 7 cut(s) 82, 316, 583, 892, 920, 979, 1068
CviQI GTAC 4 cut(s) 167, 445, 823, 1071
DdeI CTNAG 3 cut(s) 549, 857, 1034
DpnI GATC 3 cut(s) 471, 634, 883
DpnII GATC 3 cut(s) 469, 632, 881
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 4 cut(s) 187, 674, 977, 1011
EarI CTCTTC 4 cut(s) 187, 674, 977, 1011
EciI GGCGGA 1 cut(s) 1140
Ecl136II GAGCTC 2 cut(s) 27, 995
Eco24I GRGCYC 4 cut(s) 29, 313, 997, 1114
Eco47I GGWCC 1 cut(s) 1030
Eco53kI GAGCTC 2 cut(s) 27, 995
Eco57I CTGAAG 4 cut(s) 186, 698, 821, 966
Eco81I CCTNAGG 1 cut(s) 1034
Eco88I CYCGRG 2 cut(s) 424, 998
EcoICRI GAGCTC 2 cut(s) 27, 995
EcoO109I RGGNCCY 2 cut(s) 853, 1030
EcoRII CCWGG 2 cut(s) 243, 952
EcoT38I GRGCYC 4 cut(s) 29, 313, 997, 1114
FaeI CATG 7 cut(s) 85, 319, 586, 895, 923, 982, 1071
FaqI GGGAC 1 cut(s) 371
FatI CATG 7 cut(s) 81, 315, 582, 891, 919, 978, 1067
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 8 cut(s) 402, 433, 436, 501, 896, 899, 902, 962
FokI GGATG 5 cut(s) 227, 441, 526, 603, 1019
FriOI GRGCYC 4 cut(s) 29, 313, 997, 1114
Fsp4HI GCNGC 8 cut(s) 402, 433, 436, 501, 896, 899, 902, 962
FspBI CTAG 2 cut(s) 597, 767
GlaI GCGC 1 cut(s) 675
GluI GCNGC 8 cut(s) 402, 433, 436, 501, 896, 899, 902, 962
GsaI CCCAGC 1 cut(s) 100
GsuI CTGGAG 2 cut(s) 368, 1098
HaeII RGCGCY 1 cut(s) 677
HaeIII GGCC 3 cut(s) 50, 88, 854
HapII CCGG 2 cut(s) 32, 51
HhaI GCGC 1 cut(s) 676
Hin1II CATG 7 cut(s) 85, 319, 586, 895, 923, 982, 1071
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HinfI GANTC 3 cut(s) 257, 831, 841
HpaII CCGG 2 cut(s) 32, 51
HphI GGTGA 4 cut(s) 21, 464, 733, 752
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 4 cut(s) 607, 640, 830, 840
Hpy188III TCNNGA 8 cut(s) 204, 254, 316, 426, 485, 885, 944, 998
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 9 cut(s) 153, 228, 298, 708, 721, 724, 767, 845, 1021
HpyCH4III ACNGT 2 cut(s) 162, 909
HpyCH4V TGCA 6 cut(s) 22, 37, 520, 659, 914, 978
HpyF10VI GCNNNNNNNGC 4 cut(s) 392, 401, 429, 901
HpyF3I CTNAG 3 cut(s) 549, 857, 1034
Hsp92II CATG 7 cut(s) 85, 319, 586, 895, 923, 982, 1071
HspAI GCGC 1 cut(s) 674
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 3 cut(s) 469, 632, 881
LmnI GCTCC 9 cut(s) 247, 264, 391, 400, 992, 1000, 1086, 1097, 1117
Lsp1109I GCAGC 5 cut(s) 388, 447, 910, 913, 948
LweI GCATC 3 cut(s) 419, 625, 997
MaeI CTAG 2 cut(s) 597, 767
MaeIII GTNAC 4 cut(s) 106, 562, 647, 740
MalI GATC 3 cut(s) 471, 634, 883
MboI GATC 3 cut(s) 469, 632, 881
MhlI GDGCHC 4 cut(s) 29, 313, 997, 1114
MluCI AATT 8 cut(s) 16, 323, 352, 513, 734, 747, 846, 931
MlyI GAGTC 2 cut(s) 266, 850
MmeI TCCRAC 1 cut(s) 567
MseI TTAA 3 cut(s) 15, 371, 465
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 961
MspI CCGG 2 cut(s) 32, 51
MspR9I CCNGG 2 cut(s) 245, 954
MvaI CCWGG 2 cut(s) 245, 954
MwoI GCNNNNNNNGC 4 cut(s) 392, 401, 429, 901
NdeII GATC 3 cut(s) 469, 632, 881
NlaIII CATG 7 cut(s) 85, 319, 586, 895, 923, 982, 1071
NlaIV GGNNCC 4 cut(s) 266, 387, 1059, 1113
NmuCI GTSAC 2 cut(s) 562, 740
NspI RCATGY 2 cut(s) 586, 895
PagI TCATGA 1 cut(s) 315
PfeI GAWTC 1 cut(s) 831
PflMI CCANNNNNTGG 1 cut(s) 1121
PfoI TCCNGGA 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 8 cut(s) 403, 434, 437, 502, 897, 900, 903, 963
PleI GAGTC 2 cut(s) 265, 849
PpsI GAGTC 2 cut(s) 265, 849
PpuMI RGGWCCY 1 cut(s) 1030
PshAI GACNNNNGTC 1 cut(s) 954
Psp124BI GAGCTC 2 cut(s) 29, 997
Psp5II RGGWCCY 1 cut(s) 1030
Psp6I CCWGG 2 cut(s) 243, 952
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 2 cut(s) 243, 952
PspN4I GGNNCC 4 cut(s) 266, 387, 1059, 1113
PspPI GGNCC 2 cut(s) 853, 1030
PspPPI RGGWCCY 1 cut(s) 1030
PstI CTGCAG 1 cut(s) 916
PstNI CAGNNNCTG 1 cut(s) 800
PvuII CAGCTG 1 cut(s) 961
RsaI GTAC 4 cut(s) 168, 446, 824, 1072
RsaNI GTAC 4 cut(s) 167, 445, 823, 1071
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 2 cut(s) 29, 997
SaqAI TTAA 3 cut(s) 15, 371, 465
SatI GCNGC 8 cut(s) 402, 433, 436, 501, 896, 899, 902, 962
Sau3AI GATC 3 cut(s) 469, 632, 881
Sau96I GGNCC 2 cut(s) 853, 1030
SchI GAGTC 2 cut(s) 266, 850
ScrFI CCNGG 2 cut(s) 245, 954
SduI GDGCHC 4 cut(s) 29, 313, 997, 1114
SfaNI GCATC 3 cut(s) 419, 625, 997
SfcI CTRYAG 1 cut(s) 912
SgrAI CRCCGGYG 1 cut(s) 31
SinI GGWCC 1 cut(s) 1030
SmiMI CAYNNNNRTG 1 cut(s) 581
Sse9I AATT 8 cut(s) 16, 323, 352, 513, 734, 747, 846, 931
SsiI CCGC 4 cut(s) 432, 500, 895, 1125
SspI AATATT 1 cut(s) 369
SspMI CTAG 2 cut(s) 597, 767
SstI GAGCTC 2 cut(s) 29, 997
StyD4I CCNGG 2 cut(s) 243, 952
TaaI ACNGT 2 cut(s) 162, 909
TaqI TCGA 1 cut(s) 631
TasI AATT 8 cut(s) 16, 323, 352, 513, 734, 747, 846, 931
TauI GCSGC 3 cut(s) 435, 503, 898
TfiI GAWTC 1 cut(s) 831
Tru1I TTAA 3 cut(s) 15, 371, 465
Tru9I TTAA 3 cut(s) 15, 371, 465
TscAI CASTG 3 cut(s) 650, 661, 883
TseFI GTSAC 2 cut(s) 562, 740
TseI GCWGC 5 cut(s) 401, 435, 898, 901, 961
Tsp45I GTSAC 2 cut(s) 562, 740
TspDTI ATGAA 8 cut(s) 17, 142, 317, 749, 908, 995, 1029, 1056
TspGWI ACGGA 2 cut(s) 462, 1110
TspRI CASTG 3 cut(s) 650, 661, 883
Van91I CCANNNNNTGG 1 cut(s) 1121
VpaK11BI GGWCC 1 cut(s) 1030
XceI RCATGY 2 cut(s) 586, 895
XspI CTAG 2 cut(s) 597, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.