Rroxscaffold_2G00150350

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001178
Physical Location & Seq
Forward (+)
87765055 .. 87769101
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150350.1

Sequence Viewer

Length: 1161 bp
ATGAATAGAGGTCATGTTTTGCAGAGCTCACCGGTGCAACAAATGATGGCGGCTGGAAACCCTAACTGGTGGAACATCAATAGCATGAGGGCGCCAACAACGAACCAACCTTCATCTTCTCCTTTCTTGCCTGCTCCTCATCACCCTAGTTTTTTCATTCCACAGTTTCAACCTACTAGTTCCTCCTCTTCTTCACTTCCCTTTATTCCTTCTTGGCATGACAACAATAACCAGAACCAGAACCAGGAGCTTCCAGAGTCTTGGAGCCAACTCCTCCTCAGGGGTGGATTGGTTGGTGAAGATGATAAGGCAAATGGTCTGAGACAATTATTCCATCAAGGTAAGAAATTGGAGGACTGGGAGGAGCAAATATTGAGTAGTCAAGCTCATCCGAATGCTCCTGTTAATGTTGATGTGAAGCAAGAAAACTCGCCACCGGGGAGCTTTGTGTACGGACATCATGGGAATGGGAATAATAATGAAGATTTTCAGTCTGCAGCTTTGTGCTCTTTGTCTCAAATTATGCCAACCACCACTGCTGCCTCAGCCTCATCTCCCAAGTCGTCGTGTGTGACGAGTTTCGGTAGCAACATGTTGGATTTCTCTAACAAGTCGGAGGGGAGGCATCCACCACCGAGCCGATCCAGCTCCGAGTGTAATAGCAGTGCAACTGGTGGGGCAGTTAAGAAAGCTAGGGTTCAACCTTCTTCTTCAGCCCAACCTACATTCAAGGTGAGGAAGGAGAAATTAGGTGACAGAATTACAGCTCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAGGCTATTGGGTATATCAGATTCCTTCAGAATCAAATTGAGGCCCTAAGCTTACCTTACTTGGGCAGTGGATCACCAAACATGCGCCAGCAGCAGCAACAGTCTGCAGTTCATGGGGAGAGGAACTGTATGTTTCCTGAAGATCCTGGGCAGCTGCTGAATGACAACTGCTTGAAGAGGAAAGGAGTTAATGCCGAGCAGGATGCTTATGAAGTGCCAAAGAAGGACCTCAGGAGTAGGGGTTTGTGTTTGGTTCCGGTTTCTTGTACCCTGCAAGTTGGGAGCGACAACGGAGCAGATTATTGGGCTCCGGCGGCTCTCGGCGGAGGTTTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

41.92

Weight (kDa)

6.86

Isoelectric Point (pI)

65.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 3 cut(s) 50, 1136, 1146
AclWI GGATC 3 cut(s) 636, 901, 959
AcuI CTGAAG 3 cut(s) 696, 833, 981
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 2 cut(s) 452, 1090
AfiI CCNNNNNNNGG 3 cut(s) 244, 280, 884
AflIII ACRYGT 1 cut(s) 591
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 170, 701, 730, 997
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 2 cut(s) 243, 967
Alw21I GWGCWC 2 cut(s) 29, 509
Alw26I GTCTC 2 cut(s) 316, 519
AlwI GGATC 3 cut(s) 636, 901, 959
AlwNI CAGNNNCTG 2 cut(s) 812, 979
AoxI GGCC 1 cut(s) 864
ApeKI GCWGC 6 cut(s) 497, 539, 913, 916, 973, 976
AsiGI ACCGGT 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 2 cut(s) 94, 909
AspS9I GGNCC 2 cut(s) 865, 1048
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 6 cut(s) 21, 134, 308, 745, 764, 888
AvaII GGWCC 1 cut(s) 1048
AxyI CCTNAGG 2 cut(s) 278, 1052
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 2 cut(s) 29, 1132
Bbv12I GWGCWC 2 cut(s) 29, 509
BbvCI CCTCAGC 1 cut(s) 544
BbvI GCAGC 6 cut(s) 509, 526, 925, 928, 963, 985
BccI CCATC 2 cut(s) 40, 342
BcgI CGANNNNNNTGC 2 cut(s) 1007, 1041
BciT130I CCWGG 2 cut(s) 245, 969
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 316, 519
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 147, 177, 693
BfmI CTRYAG 2 cut(s) 495, 927
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 8 cut(s) 51, 498, 540, 914, 917, 974, 977, 1137
BlsI GCNGC 8 cut(s) 52, 499, 541, 915, 918, 975, 978, 1138
Bme1390I CCNGG 3 cut(s) 245, 438, 969
Bme18I GGWCC 1 cut(s) 1048
BmgT120I GGNCC 2 cut(s) 865, 1048
BmiI GGNNCC 4 cut(s) 93, 266, 1077, 1131
BmrFI CCNGG 3 cut(s) 245, 438, 969
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 2 cut(s) 634, 1015
BmuI ACTGGG 1 cut(s) 367
Bpu10I CCTNAGC 2 cut(s) 544, 869
BpuMI CCSGG 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 437, 968
BsaWI WCCGGW 2 cut(s) 31, 1078
BsaXI ACNNNNNCTCC 2 cut(s) 1048, 1078
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 280, 884
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 3 cut(s) 71, 362, 676
Bse21I CCTNAGG 2 cut(s) 278, 1052
BseBI CCWGG 2 cut(s) 245, 969
BseDI CCNNGG 2 cut(s) 437, 968
BseGI GGATG 3 cut(s) 388, 625, 1030
BseLI CCNNNNNNNGG 3 cut(s) 244, 280, 884
BseMII CTCAG 4 cut(s) 292, 311, 558, 1066
BseNI ACTGG 3 cut(s) 71, 362, 676
BseRI GAGGAG 5 cut(s) 126, 175, 263, 266, 377
BseXI GCAGC 6 cut(s) 509, 526, 925, 928, 963, 985
BshFI GGCC 1 cut(s) 866
BshNI GGYRCC 1 cut(s) 91
BshTI ACCGGT 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 29, 509
BsiSI CCGG 4 cut(s) 32, 437, 1079, 1133
BslI CCNNNNNNNGG 3 cut(s) 244, 280, 884
BsmAI GTCTC 2 cut(s) 316, 519
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 1 cut(s) 866
Bsp1286I GDGCHC 3 cut(s) 29, 509, 1132
Bsp143I GATC 3 cut(s) 641, 893, 964
BspACI CCGC 3 cut(s) 50, 1136, 1146
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 4 cut(s) 291, 312, 557, 1065
BspLI GGNNCC 4 cut(s) 93, 266, 1077, 1131
BspMAI CTGCAG 2 cut(s) 499, 931
BspPI GGATC 3 cut(s) 636, 901, 959
BspQI GCTCTTC 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 3 cut(s) 71, 362, 676
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 437, 968
BssMI GATC 3 cut(s) 641, 893, 964
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 245, 969
Bst4CI ACNGT 3 cut(s) 165, 924, 950
Bst6I CTCTTC 3 cut(s) 193, 774, 992
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 132, 911
BstDEI CTNAG 5 cut(s) 278, 320, 544, 869, 1052
BstF5I GGATG 3 cut(s) 388, 625, 1030
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 909
BstKTI GATC 3 cut(s) 644, 896, 967
BstMAI GTCTC 2 cut(s) 316, 519
BstMBI GATC 3 cut(s) 641, 893, 964
BstMWI GCNNNNNNNGC 4 cut(s) 545, 645, 913, 1136
BstNI CCWGG 2 cut(s) 245, 969
BstNSI RCATGY 2 cut(s) 595, 907
BstSCI CCNGG 3 cut(s) 243, 436, 967
BstSFI CTRYAG 2 cut(s) 495, 927
BstV1I GCAGC 6 cut(s) 509, 526, 925, 928, 963, 985
BstX2I RGATCY 1 cut(s) 964
BstXI CCANNNNNNTGG 1 cut(s) 261
BstYI RGATCY 1 cut(s) 964
Bsu36I CCTNAGG 2 cut(s) 278, 1052
BsuRI GGCC 1 cut(s) 866
BtsCI GGATG 3 cut(s) 388, 625, 1030
BtsI GCAGTG 3 cut(s) 534, 670, 895
BtsIMutI CAGTG 3 cut(s) 534, 670, 895
Cac8I GCNNGC 2 cut(s) 132, 911
CaiI CAGNNNCTG 2 cut(s) 812, 979
CfoI GCGC 2 cut(s) 94, 909
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 865, 1048
Csp6I GTAC 2 cut(s) 451, 1089
CspAI ACCGGT 1 cut(s) 31
CviAII CATG 7 cut(s) 14, 85, 218, 461, 592, 904, 935
CviQI GTAC 2 cut(s) 451, 1089
DdeI CTNAG 5 cut(s) 278, 320, 544, 869, 1052
DinI GGCGCC 1 cut(s) 93
DpnI GATC 3 cut(s) 643, 895, 966
DpnII GATC 3 cut(s) 641, 893, 964
Eam1104I CTCTTC 3 cut(s) 193, 774, 992
EarI CTCTTC 3 cut(s) 193, 774, 992
EciI GGCGGA 1 cut(s) 1161
Ecl136II GAGCTC 1 cut(s) 27
Eco24I GRGCYC 2 cut(s) 29, 1132
Eco47I GGWCC 1 cut(s) 1048
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 3 cut(s) 696, 833, 981
Eco81I CCTNAGG 2 cut(s) 278, 1052
EcoICRI GAGCTC 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 865, 1048
EcoRII CCWGG 2 cut(s) 243, 967
EcoT38I GRGCYC 2 cut(s) 29, 1132
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
FaeI CATG 7 cut(s) 17, 88, 221, 464, 595, 907, 938
FalI AAGNNNNNCTT 2 cut(s) 862, 894
FatI CATG 7 cut(s) 13, 84, 217, 460, 591, 903, 934
Fnu4HI GCNGC 8 cut(s) 51, 498, 540, 914, 917, 974, 977, 1137
FokI GGATG 3 cut(s) 375, 612, 1037
FriOI GRGCYC 2 cut(s) 29, 1132
Fsp4HI GCNGC 8 cut(s) 51, 498, 540, 914, 917, 974, 977, 1137
FspBI CTAG 3 cut(s) 147, 177, 693
GlaI GCGC 2 cut(s) 93, 908
GluI GCNGC 8 cut(s) 51, 498, 540, 914, 917, 974, 977, 1137
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 1 cut(s) 866
HapII CCGG 4 cut(s) 32, 437, 1079, 1133
HhaI GCGC 2 cut(s) 94, 909
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 7 cut(s) 17, 88, 221, 464, 595, 907, 938
Hin6I GCGC 2 cut(s) 92, 907
HinP1I GCGC 2 cut(s) 92, 907
HindIII AAGCTT 1 cut(s) 871
HinfI GANTC 3 cut(s) 257, 843, 853
HpaII CCGG 4 cut(s) 32, 437, 1079, 1133
HphI GGTGA 6 cut(s) 21, 134, 308, 745, 764, 888
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 6 cut(s) 321, 393, 616, 652, 842, 852
Hpy188III TCNNGA 3 cut(s) 254, 959, 1054
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 568
HpyAV CCTTC 6 cut(s) 120, 219, 714, 733, 857, 1039
HpyCH4III ACNGT 3 cut(s) 165, 924, 950
HpyCH4V TGCA 6 cut(s) 22, 37, 497, 668, 929, 1096
HpyF10VI GCNNNNNNNGC 4 cut(s) 545, 645, 913, 1136
HpyF3I CTNAG 5 cut(s) 278, 320, 544, 869, 1052
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 7 cut(s) 17, 88, 221, 464, 595, 907, 938
HspAI GCGC 2 cut(s) 92, 907
KasI GGCGCC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 641, 893, 964
LguI GCTCTTC 1 cut(s) 774
Lsp1109I GCAGC 6 cut(s) 509, 526, 925, 928, 963, 985
LweI GCATC 2 cut(s) 634, 1015
MaeI CTAG 3 cut(s) 147, 177, 693
MaeIII GTNAC 2 cut(s) 571, 752
MalI GATC 3 cut(s) 643, 895, 966
MboI GATC 3 cut(s) 641, 893, 964
MflI RGATCY 1 cut(s) 964
MhlI GDGCHC 3 cut(s) 29, 509, 1132
MluCI AATT 6 cut(s) 326, 347, 519, 746, 759, 858
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 576, 594
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 3 cut(s) 405, 684, 1011
MslI CAYNNNNRTG 2 cut(s) 393, 465
MspA1I CMGCKG 1 cut(s) 976
MspI CCGG 4 cut(s) 32, 437, 1079, 1133
MspR9I CCNGG 3 cut(s) 245, 438, 969
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 2 cut(s) 245, 969
MwoI GCNNNNNNNGC 4 cut(s) 545, 645, 913, 1136
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 1 cut(s) 438
NdeII GATC 3 cut(s) 641, 893, 964
NlaIII CATG 7 cut(s) 17, 88, 221, 464, 595, 907, 938
NlaIV GGNNCC 4 cut(s) 93, 266, 1077, 1131
NmeAIII GCCGAG 2 cut(s) 1042, 1122
NmuCI GTSAC 2 cut(s) 571, 752
NspI RCATGY 2 cut(s) 595, 907
PciI ACATGT 1 cut(s) 591
PciSI GCTCTTC 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 572
PctI GAATGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 843, 853
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 8 cut(s) 52, 499, 541, 915, 918, 975, 978, 1138
PleI GAGTC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 1048
PscI ACATGT 1 cut(s) 591
Psp124BI GAGCTC 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 1048
Psp6I CCWGG 2 cut(s) 243, 967
PspGI CCWGG 2 cut(s) 243, 967
PspN4I GGNNCC 4 cut(s) 93, 266, 1077, 1131
PspPI GGNCC 2 cut(s) 865, 1048
PspPPI RGGWCCY 1 cut(s) 1048
PstI CTGCAG 2 cut(s) 499, 931
PstNI CAGNNNCTG 2 cut(s) 812, 979
PsuI RGATCY 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 976
RsaI GTAC 2 cut(s) 452, 1090
RsaNI GTAC 2 cut(s) 451, 1089
RseI CAYNNNNRTG 2 cut(s) 393, 465
SacI GAGCTC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 3 cut(s) 405, 684, 1011
SatI GCNGC 8 cut(s) 51, 498, 540, 914, 917, 974, 977, 1137
Sau3AI GATC 3 cut(s) 641, 893, 964
Sau96I GGNCC 2 cut(s) 865, 1048
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 3 cut(s) 245, 438, 969
SduI GDGCHC 3 cut(s) 29, 509, 1132
SfaNI GCATC 2 cut(s) 634, 1015
SfcI CTRYAG 2 cut(s) 495, 927
SfoI GGCGCC 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 31
SinI GGWCC 1 cut(s) 1048
SmiMI CAYNNNNRTG 2 cut(s) 393, 465
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 6 cut(s) 326, 347, 519, 746, 759, 858
SsiI CCGC 3 cut(s) 50, 1136, 1146
SspDI GGCGCC 1 cut(s) 91
SspI AATATT 1 cut(s) 372
SspMI CTAG 3 cut(s) 147, 177, 693
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 243, 436, 967
TaaI ACNGT 3 cut(s) 165, 924, 950
TasI AATT 6 cut(s) 326, 347, 519, 746, 759, 858
TauI GCSGC 2 cut(s) 53, 1139
TfiI GAWTC 2 cut(s) 843, 853
Tru1I TTAA 3 cut(s) 405, 684, 1011
Tru9I TTAA 3 cut(s) 405, 684, 1011
TscAI CASTG 3 cut(s) 541, 670, 895
TseFI GTSAC 2 cut(s) 571, 752
TseI GCWGC 6 cut(s) 497, 539, 913, 916, 973, 976
Tsp45I GTSAC 2 cut(s) 571, 752
TspDTI ATGAA 7 cut(s) 17, 102, 145, 495, 761, 923, 1047
TspGWI ACGGA 2 cut(s) 468, 1128
TspRI CASTG 3 cut(s) 541, 670, 895
VpaK11BI GGWCC 1 cut(s) 1048
XceI RCATGY 2 cut(s) 595, 907
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 3 cut(s) 147, 177, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.