RLG00000019800
BHLH Family

Transcription factor bHLH68-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001178
Physical Location & Seq
Reverse (-)
56867670 .. 56869774
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019800

Sequence Viewer

Length: 747 bp
ATGATGGCCGGAAACCCTAACTGGTGGAGCACGCATCCACCGTCATCTATCTTTCCTTCTCAATATGTGCTTGGATCTTCTAATTCACTCCCTCAGCTCAATTCCTTCCCTGATCAGCATAACCTACAGCCTCCACAATCTTGGAGCCAATTACTTCTGGGCGGATTGTCCGGAGAAGATCAAGACAACTTTGGAAGTTTGAATCATTTTTCACCTAAAAGGTTGGAGAATTGGGAGGATCATCAGCAGCAAATATTGATTCCACAGTCGTATCCAAGGGTTAATCCTGTTGTTGATAGTAATATTATAAAGCAAGAGGTTAATTCCCAGAACAACATTAACTTGTGTGGTGGAGATGGAGGAGAAGAATTTCAGGCACCTTATAATAATAGGCCATCTTGGTCAGCAGCACAAATCAACATGCCAGTTTCATCCCCTAGGTCTTGTATCACTAGTTTAAGTAGTAATAATATATTGGACTTTTCCTATAACCAGAAGAACCAACATGCAGATCACTCATCTGAGTGCAATAGTCCTCCCACCGGCGGAATGTGCAAGAAAGCTAGGGTTCAACCATCTTCAAGCCAACCACCATTAAAGGTGAGAAAGGAGAAGCTAGGAGATAGAATAACAGCCCTTCATCAAATAGTTTCCCCATTTGGAAAGACTGACACTGCTTCTGTCTTGTTAGAAGCCATTGGGTATATCAGATTCCTCCAGAGTCAAATTGAGGTGATGTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.54

Weight (kDa)

6.14

Isoelectric Point (pI)

70.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 308, 384
AccB1I GGYRCC 1 cut(s) 376
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 2 cut(s) 162, 546
AclWI GGATC 2 cut(s) 82, 246
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 542, 545
AgsI TTSAA 3 cut(s) 202, 572, 582
AhlI ACTAGT 1 cut(s) 452
AluBI AGCT 3 cut(s) 97, 563, 616
AluI AGCT 3 cut(s) 97, 563, 616
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 2 cut(s) 82, 246
Aor13HI TCCGGA 1 cut(s) 170
AoxI GGCC 2 cut(s) 6, 392
ApeKI GCWGC 2 cut(s) 247, 407
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 369
AspA2I CCTAGG 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 204, 613, 745
AvrII CCTAGG 1 cut(s) 437
BaeI ACNNNNGTAYC 2 cut(s) 254, 287
BanI GGYRCC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 259, 419
BccI CCATC 3 cut(s) 350, 403, 583
BciVI GTATCC 1 cut(s) 282
BclI TGATCA 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 4 cut(s) 438, 453, 564, 617
BfmI CTRYAG 1 cut(s) 125
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 2 cut(s) 248, 408
BlnI CCTAGG 1 cut(s) 437
BlsI GCNGC 2 cut(s) 249, 409
BmiI GGNNCC 2 cut(s) 146, 378
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 275, 437
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 545
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 2 cut(s) 26, 425
BseAI TCCGGA 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 275, 437
BseGI GGATG 2 cut(s) 34, 431
BseLI CCNNNNNNNGG 2 cut(s) 542, 545
BseMII CTCAG 2 cut(s) 107, 513
BseNI ACTGG 2 cut(s) 26, 425
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 259, 419
BshFI GGCC 2 cut(s) 8, 394
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 9, 171, 543
BslI CCNNNNNNNGG 2 cut(s) 542, 545
BsnI GGCC 2 cut(s) 8, 394
Bsp1286I GDGCHC 1 cut(s) 32
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 5 cut(s) 74, 112, 178, 238, 511
BspACI CCGC 2 cut(s) 162, 546
BspANI GGCC 2 cut(s) 8, 394
BspCNI CTCAG 2 cut(s) 106, 514
BspEI TCCGGA 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 146, 378
BspPI GGATC 2 cut(s) 82, 246
BspT107I GGYRCC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 2 cut(s) 26, 425
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 275, 437
BssMI GATC 5 cut(s) 74, 112, 178, 238, 511
BssT1I CCWWGG 2 cut(s) 275, 437
Bst4CI ACNGT 2 cut(s) 42, 267
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 93, 522
BstF5I GGATG 2 cut(s) 34, 431
BstKTI GATC 5 cut(s) 77, 115, 181, 241, 514
BstMBI GATC 5 cut(s) 74, 112, 178, 238, 511
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 424, 509
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 259, 419
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 1 cut(s) 74
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 2 cut(s) 8, 394
BtsCI GGATG 2 cut(s) 34, 431
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 542
CviAII CATG 2 cut(s) 421, 506
DdeI CTNAG 2 cut(s) 93, 522
DpnI GATC 5 cut(s) 76, 114, 180, 240, 513
DpnII GATC 5 cut(s) 74, 112, 178, 238, 511
EaeI YGGCCR 1 cut(s) 6
EciI GGCGGA 2 cut(s) 177, 561
Eco130I CCWWGG 2 cut(s) 275, 437
EcoT14I CCWWGG 2 cut(s) 275, 437
ErhI CCWWGG 2 cut(s) 275, 437
FaeI CATG 2 cut(s) 424, 509
FatI CATG 2 cut(s) 420, 505
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 248, 408
FokI GGATG 2 cut(s) 21, 418
Fsp4HI GCNGC 2 cut(s) 248, 408
FspBI CTAG 4 cut(s) 438, 453, 564, 617
GluI GCNGC 2 cut(s) 248, 408
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 2 cut(s) 8, 394
HapII CCGG 3 cut(s) 9, 171, 543
Hin1II CATG 2 cut(s) 424, 509
HinfI GANTC 4 cut(s) 202, 259, 711, 721
HpaII CCGG 3 cut(s) 9, 171, 543
HphI GGTGA 3 cut(s) 204, 613, 745
Hpy188I TCNGA 2 cut(s) 523, 710
Hpy188III TCNNGA 3 cut(s) 171, 182, 718
HpyAV CCTTC 3 cut(s) 66, 115, 647
HpyCH4III ACNGT 2 cut(s) 42, 267
HpyCH4V TGCA 3 cut(s) 509, 528, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
HpyF3I CTNAG 2 cut(s) 93, 522
Hsp92II CATG 2 cut(s) 424, 509
Kpn2I TCCGGA 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 5 cut(s) 74, 112, 178, 238, 511
LmnI GCTCC 2 cut(s) 27, 144
Lsp1109I GCAGC 2 cut(s) 259, 419
LweI GCATC 1 cut(s) 43
MaeI CTAG 4 cut(s) 438, 453, 564, 617
MalI GATC 5 cut(s) 76, 114, 180, 240, 513
MboI GATC 5 cut(s) 74, 112, 178, 238, 511
MboII GAAGA 5 cut(s) 69, 188, 377, 508, 570
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 7 cut(s) 82, 100, 149, 229, 322, 368, 726
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 8 cut(s) 102, 141, 229, 310, 353, 546, 724, 725
MroI TCCGGA 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 5 cut(s) 282, 321, 339, 458, 596
MslI CAYNNNNRTG 1 cut(s) 523
MspI CCGG 3 cut(s) 9, 171, 543
MwoI GCNNNNNNNGC 1 cut(s) 552
NdeII GATC 5 cut(s) 74, 112, 178, 238, 511
NlaIII CATG 2 cut(s) 424, 509
NlaIV GGNNCC 2 cut(s) 146, 378
NspI RCATGY 2 cut(s) 424, 509
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 202, 259, 711
PkrI GCNGC 2 cut(s) 249, 409
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
PsiI TTATAA 2 cut(s) 308, 384
PspN4I GGNNCC 2 cut(s) 146, 378
PsuI RGATCY 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 523
SaqAI TTAA 5 cut(s) 282, 321, 339, 458, 596
SatI GCNGC 2 cut(s) 248, 408
Sau3AI GATC 5 cut(s) 74, 112, 178, 238, 511
SchI GAGTC 1 cut(s) 730
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 125
SgrAI CRCCGGYG 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 523
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 7 cut(s) 82, 100, 149, 229, 322, 368, 726
SsiI CCGC 2 cut(s) 162, 546
SspI AATATT 2 cut(s) 255, 304
SspMI CTAG 4 cut(s) 438, 453, 564, 617
StyI CCWWGG 2 cut(s) 275, 437
TaaI ACNGT 2 cut(s) 42, 267
TasI AATT 7 cut(s) 82, 100, 149, 229, 322, 368, 726
TfiI GAWTC 3 cut(s) 202, 259, 711
Tru1I TTAA 5 cut(s) 282, 321, 339, 458, 596
Tru9I TTAA 5 cut(s) 282, 321, 339, 458, 596
TscAI CASTG 1 cut(s) 679
TseI GCWGC 2 cut(s) 247, 407
TspDTI ATGAA 2 cut(s) 420, 629
TspRI CASTG 1 cut(s) 679
XapI RAATTY 1 cut(s) 368
XceI RCATGY 2 cut(s) 424, 509
XmaJI CCTAGG 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 4 cut(s) 438, 453, 564, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.