FvH4_1g05540

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001178
Physical Location & Seq
Reverse (-)
2915636 .. 2919672
4037 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05540.t1

Sequence Viewer

Length: 1161 bp
ATGAATAGAGGTCATGTTTTACAGAGCTCACCGGTGCAACAAATGATGGCGGCCGGAAACCCTAACTGGTGGAACATCAATAGCATGAGGGCGCCGATAACGACGAACCAACCTTCATCATCTCCTTTCTTGCCTCCTCCCCATCACCCTAGTTTTTTAATTCCACAGTTTCAACCGACTCATTCCTCCTCTTCTTCACTTCCCTTTATTCCTTCCTGGCATGACACCAACAACCAGAACCAGGAGCTTCCAGAGTCTTGGAGCCAACTCCTCATGGGTGGACTGGTAAGTGAACATGATAAGGCAAATGGTCTGAGACAATTAATCCATCAAGCTAAGAAACTGGAGGACTGGGAGGAGCATATATTGAGTAGTCAAGCTCATCCGAATGCTCCTGTTAATGTTGATGTGAAGCAAGAAAACTCACCACCAGGGAGCTTTTTGTACGGTCATCATGGGACTGGGAATAATAGTGAAGATTTCCAGTCTTCAGCTTTGTGCTCTTTGTCTCAAATTATGCCAACCAGTTCTACTGCTGCCTCAGCCTCATCTCCTAAGTCGTCGTGTGTGACGAGTTTCGGTAGCAACATGTTGGATTTCTCTAACAAGTCGGAGGCGAGGCACCCACCACCGAGCCGATCCAGCTCCGAGTGTAACAGCAGTGCAACTGGTGGGGCAGTTAAGAAAGCTAGGGTTCAACCTCCTTCTTCAGCCCAACCTACCTTCAAGGTGAGGAAGGAGAAATTAGGTGACAGAATTACAGCTCTTCATCAGCTTGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAGGCTATTGGGTATATCAGATTCCTTCAGAATCAAATTGAGGCCCTAAGCTTACCTTACTTGGGCAGTGGATCACCAAACATGCGCCTGCAGCAGCAGCAGCAGTCTGCAGTTCATGGTGAGAGGAACTGTATGTTTCCCGAAGATCCTGGGCAGCTGCTGAATGACAACTGCATGAAGATGAAAGGAGTTAACTCCGAGCAGGATGCTTATCAAGAGCCAAAGAAGGACCTGAGGAGTAGGGGTTTGTGTTTGGTTCCGGTTTCTTGTACCCTGCAAGTCGGAAGCGACAATGGAGCAGATTATTGGGCTCCGGCCGCTCTCGGCGGCGGTTTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

41.95

Weight (kDa)

6.7

Isoelectric Point (pI)

69.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 91, 621
AccBSI CCGCTC 1 cut(s) 1139
AciI CCGC 4 cut(s) 50, 1137, 1146, 1149
AclWI GGATC 3 cut(s) 633, 898, 959
AcoI YGGCCR 2 cut(s) 51, 1134
AcuI CTGAAG 3 cut(s) 474, 693, 830
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 2 cut(s) 446, 1090
AfiI CCNNNNNNNGG 3 cut(s) 241, 789, 881
AflIII ACRYGT 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 3 cut(s) 173, 698, 727
AjnI CCWGG 4 cut(s) 215, 240, 430, 967
Alw21I GWGCWC 2 cut(s) 29, 503
Alw26I GTCTC 2 cut(s) 310, 513
AlwI GGATC 3 cut(s) 633, 898, 959
AlwNI CAGNNNCTG 2 cut(s) 809, 979
AoxI GGCC 3 cut(s) 51, 861, 1134
ApeKI GCWGC 7 cut(s) 536, 910, 913, 916, 919, 973, 976
AseI ATTAAT 1 cut(s) 323
AsiGI ACCGGT 1 cut(s) 31
AspLEI GCGC 2 cut(s) 94, 906
AspS9I GGNCC 2 cut(s) 862, 1048
AsuHPI GGTGA 7 cut(s) 21, 137, 417, 742, 761, 885, 950
AvaII GGWCC 1 cut(s) 1048
AxyI CCTNAGG 1 cut(s) 1052
BanI GGYRCC 2 cut(s) 91, 621
BanII GRGCYC 2 cut(s) 29, 1132
BbsI GAAGAC 2 cut(s) 480, 800
Bbv12I GWGCWC 2 cut(s) 29, 503
BbvCI CCTCAGC 1 cut(s) 541
BbvI GCAGC 7 cut(s) 523, 922, 925, 928, 931, 963, 985
BccI CCATC 3 cut(s) 40, 150, 336
BcgI CGANNNNNNTGC 2 cut(s) 1007, 1041
BciT130I CCWGG 4 cut(s) 217, 242, 432, 969
BcoDI GTCTC 2 cut(s) 310, 513
BfaI CTAG 2 cut(s) 150, 690
BfmI CTRYAG 2 cut(s) 908, 927
BfoI RGCGCY 1 cut(s) 95
Bme1390I CCNGG 4 cut(s) 217, 242, 432, 969
Bme18I GGWCC 1 cut(s) 1048
BmgT120I GGNCC 2 cut(s) 862, 1048
BmiI GGNNCC 5 cut(s) 93, 263, 623, 1077, 1131
BmrFI CCNGG 4 cut(s) 217, 242, 432, 969
BmrI ACTGGG 2 cut(s) 361, 471
BmsI GCATC 1 cut(s) 1015
BmuI ACTGGG 2 cut(s) 361, 471
BpiI GAAGAC 2 cut(s) 480, 800
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 2 cut(s) 541, 866
BsaBI GATNNNNATC 1 cut(s) 1029
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 431, 968
BsaWI WCCGGW 2 cut(s) 31, 1078
BsaXI ACNNNNNCTCC 2 cut(s) 1048, 1078
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 789, 881
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 9 cut(s) 71, 288, 348, 356, 466, 484, 525, 673, 1156
Bse21I CCTNAGG 1 cut(s) 1052
Bse8I GATNNNNATC 1 cut(s) 1029
BseBI CCWGG 4 cut(s) 217, 242, 432, 969
BseDI CCNNGG 2 cut(s) 431, 968
BseGI GGATG 2 cut(s) 382, 1030
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 3 cut(s) 241, 789, 881
BseMII CTCAG 3 cut(s) 305, 555, 1043
BseNI ACTGG 9 cut(s) 71, 288, 348, 356, 466, 484, 525, 673, 1156
BseRI GAGGAG 5 cut(s) 126, 178, 260, 371, 1069
BseX3I CGGCCG 2 cut(s) 51, 1134
BseXI GCAGC 7 cut(s) 523, 922, 925, 928, 931, 963, 985
Bsh1285I CGRYCG 2 cut(s) 54, 1137
BshFI GGCC 3 cut(s) 53, 863, 1136
BshNI GGYRCC 2 cut(s) 91, 621
BshTI ACCGGT 1 cut(s) 31
BsiEI CGRYCG 2 cut(s) 54, 1137
BsiHKAI GWGCWC 2 cut(s) 29, 503
BsiSI CCGG 4 cut(s) 32, 54, 1079, 1133
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 3 cut(s) 241, 789, 881
BsmAI GTCTC 2 cut(s) 310, 513
BsmFI GGGAC 1 cut(s) 472
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 3 cut(s) 53, 863, 1136
Bsp1286I GDGCHC 3 cut(s) 29, 503, 1132
Bsp143I GATC 3 cut(s) 638, 890, 964
BspACI CCGC 4 cut(s) 50, 1137, 1146, 1149
BspANI GGCC 3 cut(s) 53, 863, 1136
BspCNI CTCAG 3 cut(s) 306, 554, 1044
BspLI GGNNCC 5 cut(s) 93, 263, 623, 1077, 1131
BspMAI CTGCAG 2 cut(s) 912, 931
BspPI GGATC 3 cut(s) 633, 898, 959
BspQI GCTCTTC 1 cut(s) 771
BspT107I GGYRCC 2 cut(s) 91, 621
BsrBI CCGCTC 1 cut(s) 1139
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 9 cut(s) 71, 288, 348, 356, 466, 484, 525, 673, 1156
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 431, 968
BssMI GATC 3 cut(s) 638, 890, 964
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 4 cut(s) 217, 242, 432, 969
Bst4CI ACNGT 3 cut(s) 168, 449, 950
Bst6I CTCTTC 2 cut(s) 196, 771
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 908
BstDEI CTNAG 6 cut(s) 314, 336, 541, 555, 866, 1052
BstF5I GGATG 2 cut(s) 382, 1030
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 906
BstKTI GATC 3 cut(s) 641, 893, 967
BstMAI GTCTC 2 cut(s) 310, 513
BstMBI GATC 3 cut(s) 638, 890, 964
BstMCI CGRYCG 2 cut(s) 54, 1137
BstMWI GCNNNNNNNGC 6 cut(s) 542, 642, 910, 916, 919, 1136
BstNI CCWGG 4 cut(s) 217, 242, 432, 969
BstNSI RCATGY 2 cut(s) 592, 904
BstSCI CCNGG 4 cut(s) 215, 240, 430, 967
BstSFI CTRYAG 2 cut(s) 908, 927
BstV1I GCAGC 7 cut(s) 523, 922, 925, 928, 931, 963, 985
BstV2I GAAGAC 2 cut(s) 480, 800
BstX2I RGATCY 1 cut(s) 964
BstXI CCANNNNNNTGG 1 cut(s) 258
BstYI RGATCY 1 cut(s) 964
BstZI CGGCCG 2 cut(s) 51, 1134
Bsu36I CCTNAGG 1 cut(s) 1052
BsuRI GGCC 3 cut(s) 53, 863, 1136
BtsCI GGATG 2 cut(s) 382, 1030
BtsI GCAGTG 2 cut(s) 667, 892
BtsIMutI CAGTG 2 cut(s) 667, 892
Cac8I GCNNGC 1 cut(s) 908
CaiI CAGNNNCTG 2 cut(s) 809, 979
CfoI GCGC 2 cut(s) 94, 906
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 862, 1048
Csp6I GTAC 2 cut(s) 445, 1089
CspAI ACCGGT 1 cut(s) 31
CviQI GTAC 2 cut(s) 445, 1089
DdeI CTNAG 6 cut(s) 314, 336, 541, 555, 866, 1052
DinI GGCGCC 1 cut(s) 93
DpnI GATC 3 cut(s) 640, 892, 966
DpnII GATC 3 cut(s) 638, 890, 964
EaeI YGGCCR 2 cut(s) 51, 1134
EagI CGGCCG 2 cut(s) 51, 1134
Eam1104I CTCTTC 2 cut(s) 196, 771
EarI CTCTTC 2 cut(s) 196, 771
Ecl136II GAGCTC 1 cut(s) 27
EclXI CGGCCG 2 cut(s) 51, 1134
Eco24I GRGCYC 2 cut(s) 29, 1132
Eco47I GGWCC 1 cut(s) 1048
Eco52I CGGCCG 2 cut(s) 51, 1134
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 3 cut(s) 474, 693, 830
Eco81I CCTNAGG 1 cut(s) 1052
EcoICRI GAGCTC 1 cut(s) 27
EcoO109I RGGNCCY 2 cut(s) 862, 1048
EcoRII CCWGG 4 cut(s) 215, 240, 430, 967
EcoT38I GRGCYC 2 cut(s) 29, 1132
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
FalI AAGNNNNNCTT 2 cut(s) 859, 891
FaqI GGGAC 1 cut(s) 472
FokI GGATG 2 cut(s) 369, 1037
FriOI GRGCYC 2 cut(s) 29, 1132
FspBI CTAG 2 cut(s) 150, 690
GlaI GCGC 2 cut(s) 93, 905
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 3 cut(s) 53, 863, 1136
HapII CCGG 4 cut(s) 32, 54, 1079, 1133
HhaI GCGC 2 cut(s) 94, 906
Hin1I GRCGYC 1 cut(s) 92
Hin6I GCGC 2 cut(s) 92, 904
HinP1I GCGC 2 cut(s) 92, 904
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 4 cut(s) 178, 254, 840, 850
HpaI GTTAAC 1 cut(s) 1012
HpaII CCGG 4 cut(s) 32, 54, 1079, 1133
HphI GGTGA 7 cut(s) 21, 137, 417, 742, 761, 885, 950
Hpy166II GTNNAC 3 cut(s) 281, 293, 1012
Hpy188I TCNGA 8 cut(s) 315, 387, 613, 649, 839, 849, 1018, 1103
Hpy188III TCNNGA 3 cut(s) 251, 959, 1034
Hpy8I GTNNAC 3 cut(s) 281, 293, 1012
Hpy99I CGWCG 2 cut(s) 106, 565
HpyAV CCTTC 7 cut(s) 123, 222, 714, 730, 733, 854, 1039
HpyCH4III ACNGT 3 cut(s) 168, 449, 950
HpyCH4V TGCA 6 cut(s) 37, 665, 910, 929, 993, 1096
HpyF10VI GCNNNNNNNGC 6 cut(s) 542, 642, 910, 916, 919, 1136
HpyF3I CTNAG 6 cut(s) 314, 336, 541, 555, 866, 1052
Hsp92I GRCGYC 1 cut(s) 92
HspAI GCGC 2 cut(s) 92, 904
KasI GGCGCC 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 1012
Kzo9I GATC 3 cut(s) 638, 890, 964
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 8 cut(s) 244, 261, 358, 397, 435, 650, 1115, 1135
Lsp1109I GCAGC 7 cut(s) 523, 922, 925, 928, 931, 963, 985
LweI GCATC 1 cut(s) 1015
MaeI CTAG 2 cut(s) 150, 690
MaeIII GTNAC 3 cut(s) 568, 653, 749
MalI GATC 3 cut(s) 640, 892, 966
MbiI CCGCTC 1 cut(s) 1139
MboI GATC 3 cut(s) 638, 890, 964
MboII GAAGA 9 cut(s) 183, 186, 480, 488, 699, 758, 805, 974, 1009
MflI RGATCY 1 cut(s) 964
MhlI GDGCHC 3 cut(s) 29, 503, 1132
MluCI AATT 6 cut(s) 159, 320, 513, 743, 756, 855
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 2 cut(s) 172, 263
MmeI TCCRAC 3 cut(s) 573, 591, 1081
MseI TTAA 5 cut(s) 158, 323, 399, 681, 1011
MslI CAYNNNNRTG 2 cut(s) 387, 998
MspA1I CMGCKG 1 cut(s) 976
MspI CCGG 4 cut(s) 32, 54, 1079, 1133
MspR9I CCNGG 4 cut(s) 217, 242, 432, 969
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 4 cut(s) 217, 242, 432, 969
MwoI GCNNNNNNNGC 6 cut(s) 542, 642, 910, 916, 919, 1136
NarI GGCGCC 1 cut(s) 92
NdeII GATC 3 cut(s) 638, 890, 964
NlaIV GGNNCC 5 cut(s) 93, 263, 623, 1077, 1131
NmeAIII GCCGAG 1 cut(s) 1122
NmuCI GTSAC 2 cut(s) 568, 749
NspI RCATGY 2 cut(s) 592, 904
PciI ACATGT 1 cut(s) 588
PciSI GCTCTTC 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 569
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 2 cut(s) 840, 850
PinAI ACCGGT 1 cut(s) 31
PleI GAGTC 2 cut(s) 172, 262
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 2 cut(s) 172, 262
PpuMI RGGWCCY 1 cut(s) 1048
PscI ACATGT 1 cut(s) 588
PshBI ATTAAT 1 cut(s) 323
Psp124BI GAGCTC 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 1048
Psp6I CCWGG 4 cut(s) 215, 240, 430, 967
PspGI CCWGG 4 cut(s) 215, 240, 430, 967
PspN4I GGNNCC 5 cut(s) 93, 263, 623, 1077, 1131
PspPI GGNCC 2 cut(s) 862, 1048
PspPPI RGGWCCY 1 cut(s) 1048
PstI CTGCAG 2 cut(s) 912, 931
PstNI CAGNNNCTG 2 cut(s) 809, 979
PsuI RGATCY 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 976
RsaI GTAC 2 cut(s) 446, 1090
RsaNI GTAC 2 cut(s) 445, 1089
RseI CAYNNNNRTG 2 cut(s) 387, 998
SacI GAGCTC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 5 cut(s) 158, 323, 399, 681, 1011
Sau3AI GATC 3 cut(s) 638, 890, 964
Sau96I GGNCC 2 cut(s) 862, 1048
SchI GAGTC 2 cut(s) 172, 263
ScrFI CCNGG 4 cut(s) 217, 242, 432, 969
SduI GDGCHC 3 cut(s) 29, 503, 1132
SfaNI GCATC 1 cut(s) 1015
SfcI CTRYAG 2 cut(s) 908, 927
SfoI GGCGCC 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 31
SinI GGWCC 1 cut(s) 1048
SmiMI CAYNNNNRTG 2 cut(s) 387, 998
Sse9I AATT 6 cut(s) 159, 320, 513, 743, 756, 855
SsiI CCGC 4 cut(s) 50, 1137, 1146, 1149
SspDI GGCGCC 1 cut(s) 91
SspMI CTAG 2 cut(s) 150, 690
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 215, 240, 430, 967
TaaI ACNGT 3 cut(s) 168, 449, 950
TasI AATT 6 cut(s) 159, 320, 513, 743, 756, 855
TauI GCSGC 3 cut(s) 53, 1139, 1149
TfiI GAWTC 2 cut(s) 840, 850
Tru1I TTAA 5 cut(s) 158, 323, 399, 681, 1011
Tru9I TTAA 5 cut(s) 158, 323, 399, 681, 1011
TscAI CASTG 2 cut(s) 667, 892
TseFI GTSAC 2 cut(s) 568, 749
TseI GCWGC 7 cut(s) 536, 910, 913, 916, 919, 973, 976
Tsp45I GTSAC 2 cut(s) 568, 749
TspDTI ATGAA 6 cut(s) 17, 105, 758, 923, 1010, 1016
TspRI CASTG 2 cut(s) 667, 892
VpaK11BI GGWCC 1 cut(s) 1048
VspI ATTAAT 1 cut(s) 323
XceI RCATGY 2 cut(s) 592, 904
XspI CTAG 2 cut(s) 150, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.