Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001178

Physical Location & Seq

Genomic Coordinates Forward (+)

44989903 .. 44992647

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0356200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTGCTTGGACTTGTTGGCCTGAACTTGTTGTTCCTTTCTATTCCCCTCTCTTTCTCTCTCTCTCACAGTCTTTGTTTGATCATCACATTCACAATCACACCCTTTGTTTCCCATATTCTCTCCTTCCTTGATTTCTGCGATTCCGGTTTCATTTCGCCGAGAAAGTCTCAAGCTTTTCTCGGTTGGATTGCTGGAAACTCAAGGGGAGGGAGGGTGCACTCAATCTCTGTGCTACCGATGCCAGACACTCGGCAGGCTCTGAAGAATGCCGTTCCCAATCAATCCGACGGTACCGTTGAAGAGGCGTTTTGGCGGTTGACAATCAATGAGAATCAAGATGGGGGTGGTGTGACTCAGTCTAACCTATACCCTGATCGACCTGGTGAACCCGATTGCATATATTATTTGAGGACTGGGTTGTGTGGTTATGGCAGTAACTGTCGGTTTAATCACCCTAAATATGCTTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

6.88

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	128 - 154	5.5e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20100 AT2G20100 AT2G20100 AT2G20100 AT4G29100 AT4G29100
fragaria_vesca	FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900
malus_domestica	MD02G1056800.v1.1 MD09G1208300.v1.1 MD15G1191400.v1.1 MD17G1190000.v1.1
prunus_persica	Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.7G225800_v2.0.a1
pyrus_communis	pycom02g04600 pycom09g12450 pycom15g17140 pycom17g19760
rosa_chinensis	RchiOBHm_Chr2g0091241 RchiOBHm_Chr2g0139261
rosa_laevigata	RLG00000016195 RLG00000019800
rosa_multiflora	Rmu_sc0002270.1_g000018 Rmu_sc0002525.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105520 Rroxscaffold_2G00150350
rosa_rugosa	Rorug02G0014700 Rorug02G0014800 Rorug02G0356100 Rorug02G0356200 Rorug02G0356300 Rorug02G0356400 Rorug02G0356500 Rorug02G0356600
rosa_samantha	Rh2AG060500 Rh2AG406100 Rh2BG059200 Rh2BG416700 Rh2CG061000 Rh2CG392400 Rh2DG059800 Rh2DG425800
rosa_wichuraiana	Rw2G004940 Rw2G032910 Rw2G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AciI	CCGC	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	218
AlwNI	CAGNNNCTG	2 cut(s)	262, 441
AoxI	GGCC	1 cut(s)	19
ApaLI	GTGCAC	1 cut(s)	218
Asp718I	GGTACC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	398, 446
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	384
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpuEI	CTTGAG	2 cut(s)	156, 187
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	81, 376
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	421
BssMI	GATC	2 cut(s)	81, 376
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	5 cut(s)	71, 293, 298, 443, 474
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	357
BstKTI	GATC	2 cut(s)	84, 379
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	81, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	2 cut(s)	262, 441
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	294
CviJI	RGCY	3 cut(s)	21, 176, 260
CviKI_1	RGCY	3 cut(s)	21, 176, 260
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	83, 378
DpnII	GATC	2 cut(s)	81, 376
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	382
FaiI	YATR	6 cut(s)	117, 370, 401, 403, 432, 465
FbaI	TGATCA	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	3 cut(s)	143, 334, 355
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	398, 446
Hpy166II	GTNNAC	3 cut(s)	220, 321, 389
Hpy188I	TCNGA	2 cut(s)	264, 289
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	3 cut(s)	220, 321, 389
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	5 cut(s)	71, 293, 298, 443, 474
HpyCH4V	TGCA	2 cut(s)	220, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	357
KpnI	GGTACC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 376
LpnPI	CCDG	9 cut(s)	35, 160, 180, 242, 258, 369, 387, 396, 402
LweI	GCATC	1 cut(s)	231
MabI	ACCWGGT	1 cut(s)	382
MaeIII	GTNAC	2 cut(s)	352, 437
MalI	GATC	2 cut(s)	83, 378
MboI	GATC	2 cut(s)	81, 376
MboII	GAAGA	2 cut(s)	277, 314
MhlI	GDGCHC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	2 cut(s)	167, 312
MnlI	CCTC	5 cut(s)	59, 203, 207, 298, 405
MseI	TTAA	1 cut(s)	450
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	2 cut(s)	81, 376
NlaIV	GGNNCC	1 cut(s)	295
NmeAIII	GCCGAG	2 cut(s)	186, 232
NmuCI	GTSAC	1 cut(s)	352
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	143, 334
PflFI	GACNNNGTC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	295
PstNI	CAGNNNCTG	2 cut(s)	262, 441
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	450
Sau3AI	GATC	2 cut(s)	81, 376
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	3 cut(s)	178, 369, 385
SexAI	ACCWGGT	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	171, 202
SmoI	CTYRAG	2 cut(s)	171, 202
SsiI	CCGC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	5 cut(s)	71, 293, 298, 443, 474
TaqI	TCGA	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	143, 334
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.