Transcription factor bHLH68-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 506 - 762 | 6.9e-31 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 256 |
| AccBSI | CCGCTC | 1 cut(s) | 191 |
| AccI | GTMKAC | 1 cut(s) | 2260 |
| AccII | CGCG | 2 cut(s) | 950, 2491 |
| AciI | CCGC | 7 cut(s) | 191, 878, 1298, 2174, 2305, 2577, 2615 |
| AclWI | GGATC | 5 cut(s) | 171, 1086, 1465, 1478, 1931 |
| AcsI | RAATTY | 2 cut(s) | 157, 760 |
| AcuI | CTGAAG | 4 cut(s) | 513, 987, 1161, 2139 |
| AcvI | CACGTG | 2 cut(s) | 569, 659 |
| AcyI | GRCGYC | 1 cut(s) | 2257 |
| AfaI | GTAC | 4 cut(s) | 1087, 2185, 2224, 2392 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 400 |
| AflIII | ACRYGT | 4 cut(s) | 566, 574, 658, 1910 |
| AhlI | ACTAGT | 2 cut(s) | 638, 1835 |
| AjnI | CCWGG | 4 cut(s) | 1369, 1657, 2036, 2595 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1443, 1475, 1556, 1588 |
| Alw21I | GWGCWC | 5 cut(s) | 566, 1054, 1369, 1918, 2563 |
| Alw26I | GTCTC | 3 cut(s) | 2061, 2211, 2513 |
| AlwI | GGATC | 5 cut(s) | 171, 1086, 1465, 1478, 1931 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1376 |
| Ama87I | CYCGRG | 1 cut(s) | 1053 |
| AoxI | GGCC | 5 cut(s) | 451, 629, 1373, 1987, 2453 |
| ApoI | RAATTY | 2 cut(s) | 157, 760 |
| AseI | ATTAAT | 2 cut(s) | 1671, 2169 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1087 |
| AspLEI | GCGC | 1 cut(s) | 2491 |
| AspS9I | GGNCC | 6 cut(s) | 452, 716, 1373, 1392, 1714, 1987 |
| AsuC2I | CCSGG | 1 cut(s) | 1985 |
| AsuHPI | GGTGA | 3 cut(s) | 115, 922, 1291 |
| AvaI | CYCGRG | 1 cut(s) | 1053 |
| AvaII | GGWCC | 3 cut(s) | 716, 1392, 1714 |
| BamHI | GGATCC | 1 cut(s) | 1470 |
| BanII | GRGCYC | 3 cut(s) | 300, 436, 1054 |
| BauI | CACGAG | 3 cut(s) | 437, 915, 1917 |
| BbrPI | CACGTG | 2 cut(s) | 569, 659 |
| BbsI | GAAGAC | 3 cut(s) | 141, 993, 1131 |
| Bbv12I | GWGCWC | 5 cut(s) | 566, 1054, 1369, 1918, 2563 |
| BbvCI | CCTCAGC | 1 cut(s) | 1638 |
| BccI | CCATC | 7 cut(s) | 394, 463, 903, 1067, 1279, 1349, 1373 |
| BceAI | ACGGC | 1 cut(s) | 2135 |
| BciT130I | CCWGG | 4 cut(s) | 1371, 1659, 2038, 2597 |
| BciVI | GTATCC | 1 cut(s) | 1155 |
| BclI | TGATCA | 2 cut(s) | 670, 967 |
| BcnI | CCSGG | 1 cut(s) | 1985 |
| BcoDI | GTCTC | 3 cut(s) | 2061, 2211, 2513 |
| BcuI | ACTAGT | 2 cut(s) | 638, 1835 |
| BfaI | CTAG | 7 cut(s) | 408, 639, 926, 1362, 1836, 2202, 2481 |
| BfuAI | ACCTGC | 1 cut(s) | 256 |
| BfuI | GTATCC | 1 cut(s) | 1155 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1663 |
| BglII | AGATCT | 1 cut(s) | 361 |
| BlpI | GCTNAGC | 2 cut(s) | 105, 1527 |
| BmcAI | AGTACT | 2 cut(s) | 1087, 2185 |
| Bme1390I | CCNGG | 5 cut(s) | 1371, 1659, 1985, 2038, 2597 |
| Bme18I | GGWCC | 3 cut(s) | 716, 1392, 1714 |
| BmeT110I | CYCGRG | 1 cut(s) | 1053 |
| BmgT120I | GGNCC | 6 cut(s) | 452, 716, 1373, 1392, 1714, 1987 |
| BmiI | GGNNCC | 6 cut(s) | 282, 433, 718, 1393, 1472, 1988 |
| BmrFI | CCNGG | 5 cut(s) | 1371, 1659, 1985, 2038, 2597 |
| BmrI | ACTGGG | 1 cut(s) | 294 |
| BmsI | GCATC | 3 cut(s) | 763, 1003, 1014 |
| BmuI | ACTGGG | 1 cut(s) | 294 |
| BoxI | GACNNNNGTC | 1 cut(s) | 597 |
| BpiI | GAAGAC | 3 cut(s) | 141, 993, 1131 |
| BpmI | CTGGAG | 1 cut(s) | 1353 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1125, 1558, 1638 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 105, 1527 |
| BpuEI | CTTGAG | 1 cut(s) | 1881 |
| BpuMI | CCSGG | 1 cut(s) | 1985 |
| BsaAI | YACGTR | 4 cut(s) | 569, 659, 1625, 1911 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1077 |
| BsaHI | GRCGYC | 1 cut(s) | 2257 |
| BsaI | GGTCTC | 1 cut(s) | 2211 |
| BsaJI | CCNNGG | 6 cut(s) | 395, 955, 1110, 1370, 1984, 2036 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 29, 59, 553, 583 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 400 |
| Bse1I | ACTGG | 2 cut(s) | 300, 1472 |
| Bse3DI | GCAATG | 1 cut(s) | 99 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1077 |
| BseBI | CCWGG | 4 cut(s) | 1371, 1659, 2038, 2597 |
| BseDI | CCNNGG | 6 cut(s) | 395, 955, 1110, 1370, 1984, 2036 |
| BseGI | GGATG | 7 cut(s) | 405, 754, 988, 1029, 1255, 1360, 2643 |
| BseJI | GATNNNNATC | 1 cut(s) | 1077 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 400 |
| BseMI | GCAATG | 1 cut(s) | 99 |
| BseMII | CTCAG | 6 cut(s) | 96, 1033, 1541, 1553, 1652, 1875 |
| BseNI | ACTGG | 2 cut(s) | 300, 1472 |
| BseRI | GAGGAG | 3 cut(s) | 1626, 1884, 1985 |
| BseYI | CCCAGC | 1 cut(s) | 2384 |
| BsgI | GTGCAG | 6 cut(s) | 498, 1140, 1359, 1605, 2034, 2169 |
| Bsh1236I | CGCG | 2 cut(s) | 950, 2491 |
| BshFI | GGCC | 5 cut(s) | 453, 631, 1375, 1989, 2455 |
| BsiHKAI | GWGCWC | 5 cut(s) | 566, 1054, 1369, 1918, 2563 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1053 |
| BsiSI | CCGG | 1 cut(s) | 1984 |
| BslFI | GGGAC | 4 cut(s) | 425, 702, 1502, 2114 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 400 |
| BsmAI | GTCTC | 3 cut(s) | 2061, 2211, 2513 |
| BsmBI | CGTCTC | 1 cut(s) | 2061 |
| BsmFI | GGGAC | 4 cut(s) | 425, 702, 1502, 2114 |
| BsmI | GAATGC | 1 cut(s) | 1703 |
| BsnI | GGCC | 5 cut(s) | 453, 631, 1375, 1989, 2455 |
| Bso31I | GGTCTC | 1 cut(s) | 2211 |
| BsoBI | CYCGRG | 1 cut(s) | 1053 |
| Bsp1286I | GDGCHC | 7 cut(s) | 300, 436, 566, 1054, 1369, 1918, 2563 |
| Bsp143I | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 105, 1527 |
| Bsp19I | CCATGG | 1 cut(s) | 395 |
| Bsp68I | TCGCGA | 1 cut(s) | 950 |
| BspACI | CCGC | 7 cut(s) | 191, 878, 1298, 2174, 2305, 2577, 2615 |
| BspANI | GGCC | 5 cut(s) | 453, 631, 1375, 1989, 2455 |
| BspCNI | CTCAG | 6 cut(s) | 97, 1032, 1540, 1552, 1651, 1874 |
| BspFNI | CGCG | 2 cut(s) | 950, 2491 |
| BspLI | GGNNCC | 6 cut(s) | 282, 433, 718, 1393, 1472, 1988 |
| BspMI | ACCTGC | 1 cut(s) | 256 |
| BspPI | GGATC | 5 cut(s) | 171, 1086, 1465, 1478, 1931 |
| BspQI | GCTCTTC | 3 cut(s) | 201, 378, 657 |
| BspTNI | GGTCTC | 1 cut(s) | 2211 |
| BsrBI | CCGCTC | 1 cut(s) | 191 |
| BsrDI | GCAATG | 1 cut(s) | 99 |
| BsrI | ACTGG | 2 cut(s) | 300, 1472 |
| BssECI | CCNNGG | 6 cut(s) | 395, 955, 1110, 1370, 1984, 2036 |
| BssMI | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| BssNI | GRCGYC | 1 cut(s) | 2257 |
| BssSI | CACGAG | 3 cut(s) | 437, 915, 1917 |
| BssT1I | CCWWGG | 2 cut(s) | 395, 1110 |
| Bst2BI | CACGAG | 3 cut(s) | 437, 915, 1917 |
| Bst2UI | CCWGG | 4 cut(s) | 1371, 1659, 2038, 2597 |
| Bst4CI | ACNGT | 6 cut(s) | 804, 1198, 2055, 2141, 2227, 2539 |
| Bst6I | CTCTTC | 4 cut(s) | 201, 378, 657, 1577 |
| BstACI | GRCGYC | 1 cut(s) | 2257 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 859 |
| BstBAI | YACGTR | 4 cut(s) | 569, 659, 1625, 1911 |
| BstC8I | GCNNGC | 1 cut(s) | 2457 |
| BstDSI | CCRYGG | 2 cut(s) | 395, 955 |
| BstF5I | GGATG | 7 cut(s) | 405, 754, 988, 1029, 1255, 1360, 2643 |
| BstFNI | CGCG | 2 cut(s) | 950, 2491 |
| BstHHI | GCGC | 1 cut(s) | 2491 |
| BstKTI | GATC | 8 cut(s) | 166, 364, 673, 687, 970, 1081, 1473, 1939 |
| BstMAI | GTCTC | 3 cut(s) | 2061, 2211, 2513 |
| BstMBI | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 859, 1663, 1973, 2336, 2368 |
| BstNI | CCWGG | 4 cut(s) | 1371, 1659, 2038, 2597 |
| BstNSI | RCATGY | 2 cut(s) | 578, 1443 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 597 |
| BstSCI | CCNGG | 5 cut(s) | 1369, 1657, 1983, 2036, 2595 |
| BstUI | CGCG | 2 cut(s) | 950, 2491 |
| BstV2I | GAAGAC | 3 cut(s) | 141, 993, 1131 |
| BstX2I | RGATCY | 4 cut(s) | 163, 361, 1470, 1936 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 207 |
| BstYI | RGATCY | 4 cut(s) | 163, 361, 1470, 1936 |
| BsuI | GTATCC | 1 cut(s) | 1155 |
| BsuRI | GGCC | 5 cut(s) | 453, 631, 1375, 1989, 2455 |
| BtgI | CCRYGG | 2 cut(s) | 395, 955 |
| BtsCI | GGATG | 7 cut(s) | 405, 754, 988, 1029, 1255, 1360, 2643 |
| BtsI | GCAGTG | 1 cut(s) | 2046 |
| BtsIMutI | CAGTG | 4 cut(s) | 1153, 2046, 2448, 2535 |
| BtuMI | TCGCGA | 1 cut(s) | 950 |
| BveI | ACCTGC | 1 cut(s) | 256 |
| Cac8I | GCNNGC | 1 cut(s) | 2457 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1376 |
| CfoI | GCGC | 1 cut(s) | 2491 |
| Cfr13I | GGNCC | 6 cut(s) | 452, 716, 1373, 1392, 1714, 1987 |
| CseI | GACGC | 1 cut(s) | 2246 |
| Csp6I | GTAC | 4 cut(s) | 1086, 2184, 2223, 2391 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 166, 201 |
| CviQI | GTAC | 4 cut(s) | 1086, 2184, 2223, 2391 |
| DpnI | GATC | 8 cut(s) | 165, 363, 672, 686, 969, 1080, 1472, 1938 |
| DpnII | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| Eam1104I | CTCTTC | 4 cut(s) | 201, 378, 657, 1577 |
| EarI | CTCTTC | 4 cut(s) | 201, 378, 657, 1577 |
| Ecl136II | GAGCTC | 1 cut(s) | 1052 |
| Eco130I | CCWWGG | 2 cut(s) | 395, 1110 |
| Eco24I | GRGCYC | 3 cut(s) | 300, 436, 1054 |
| Eco31I | GGTCTC | 1 cut(s) | 2211 |
| Eco32I | GATATC | 1 cut(s) | 946 |
| Eco47I | GGWCC | 3 cut(s) | 716, 1392, 1714 |
| Eco53kI | GAGCTC | 1 cut(s) | 1052 |
| Eco57I | CTGAAG | 4 cut(s) | 513, 987, 1161, 2139 |
| Eco72I | CACGTG | 2 cut(s) | 569, 659 |
| Eco88I | CYCGRG | 1 cut(s) | 1053 |
| EcoICRI | GAGCTC | 1 cut(s) | 1052 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1373, 1392, 1987 |
| EcoRII | CCWGG | 4 cut(s) | 1369, 1657, 2036, 2595 |
| EcoRV | GATATC | 1 cut(s) | 946 |
| EcoT14I | CCWWGG | 2 cut(s) | 395, 1110 |
| EcoT38I | GRGCYC | 3 cut(s) | 300, 436, 1054 |
| ErhI | CCWWGG | 2 cut(s) | 395, 1110 |
| Esp3I | CGTCTC | 1 cut(s) | 2061 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1075, 1107 |
| FaqI | GGGAC | 4 cut(s) | 425, 702, 1502, 2114 |
| FauI | CCCGC | 2 cut(s) | 2312, 2570 |
| FbaI | TGATCA | 2 cut(s) | 670, 967 |
| FblI | GTMKAC | 1 cut(s) | 2260 |
| FokI | GGATG | 6 cut(s) | 412, 741, 995, 1036, 1262, 1367 |
| FriOI | GRGCYC | 3 cut(s) | 300, 436, 1054 |
| FspBI | CTAG | 7 cut(s) | 408, 639, 926, 1362, 1836, 2202, 2481 |
| GlaI | GCGC | 1 cut(s) | 2490 |
| GsaI | CCCAGC | 1 cut(s) | 2388 |
| GsuI | CTGGAG | 1 cut(s) | 1353 |
| HaeIII | GGCC | 5 cut(s) | 453, 631, 1375, 1989, 2455 |
| HapII | CCGG | 1 cut(s) | 1984 |
| HgaI | GACGC | 1 cut(s) | 2246 |
| HhaI | GCGC | 1 cut(s) | 2491 |
| Hin1I | GRCGYC | 1 cut(s) | 2257 |
| Hin6I | GCGC | 1 cut(s) | 2489 |
| HinP1I | GCGC | 1 cut(s) | 2489 |
| HincII | GTYRAC | 1 cut(s) | 305 |
| HindII | GTYRAC | 1 cut(s) | 305 |
| HindIII | AAGCTT | 2 cut(s) | 624, 1404 |
| HinfI | GANTC | 5 cut(s) | 44, 1213, 1743, 2521, 2548 |
| HpaII | CCGG | 1 cut(s) | 1984 |
| HphI | GGTGA | 3 cut(s) | 115, 922, 1291 |
| Hpy166II | GTNNAC | 4 cut(s) | 123, 305, 572, 2261 |
| Hpy188III | TCNNGA | 7 cut(s) | 447, 917, 949, 1021, 1576, 2508, 2591 |
| Hpy8I | GTNNAC | 4 cut(s) | 123, 305, 572, 2261 |
| Hpy99I | CGWCG | 1 cut(s) | 244 |
| HpyAV | CCTTC | 5 cut(s) | 211, 471, 1185, 1245, 2000 |
| HpyCH4III | ACNGT | 6 cut(s) | 804, 1198, 2055, 2141, 2227, 2539 |
| HpyCH4IV | ACGT | 6 cut(s) | 386, 568, 658, 1624, 1910, 2233 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 859, 1663, 1973, 2336, 2368 |
| HpySE526I | ACGT | 6 cut(s) | 386, 568, 658, 1624, 1910, 2233 |
| Hsp92I | GRCGYC | 1 cut(s) | 2257 |
| HspAI | GCGC | 1 cut(s) | 2489 |
| Ksp22I | TGATCA | 2 cut(s) | 670, 967 |
| Kzo9I | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| LguI | GCTCTTC | 3 cut(s) | 201, 378, 657 |
| LmnI | GCTCC | 7 cut(s) | 188, 431, 561, 1372, 1800, 2198, 2566 |
| LweI | GCATC | 3 cut(s) | 763, 1003, 1014 |
| MaeI | CTAG | 7 cut(s) | 408, 639, 926, 1362, 1836, 2202, 2481 |
| MaeII | ACGT | 6 cut(s) | 386, 568, 658, 1624, 1910, 2233 |
| MaeIII | GTNAC | 8 cut(s) | 268, 403, 823, 928, 1279, 2210, 2533, 2591 |
| MalI | GATC | 8 cut(s) | 165, 363, 672, 686, 969, 1080, 1472, 1938 |
| MbiI | CCGCTC | 1 cut(s) | 191 |
| MboI | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| MfeI | CAATTG | 2 cut(s) | 1551, 2015 |
| MflI | RGATCY | 4 cut(s) | 163, 361, 1470, 1936 |
| MhlI | GDGCHC | 7 cut(s) | 300, 436, 566, 1054, 1369, 1918, 2563 |
| MlyI | GAGTC | 3 cut(s) | 38, 2515, 2542 |
| MmeI | TCCRAC | 4 cut(s) | 263, 276, 539, 767 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1087 |
| MslI | CAYNNNNRTG | 2 cut(s) | 900, 1104 |
| MspA1I | CMGCKG | 1 cut(s) | 2310 |
| MspI | CCGG | 1 cut(s) | 1984 |
| MspR9I | CCNGG | 5 cut(s) | 1371, 1659, 1985, 2038, 2597 |
| MunI | CAATTG | 2 cut(s) | 1551, 2015 |
| Mva1269I | GAATGC | 1 cut(s) | 1703 |
| MvaI | CCWGG | 4 cut(s) | 1371, 1659, 2038, 2597 |
| MvnI | CGCG | 2 cut(s) | 950, 2491 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 859, 1663, 1973, 2336, 2368 |
| NciI | CCSGG | 1 cut(s) | 1985 |
| NcoI | CCATGG | 1 cut(s) | 395 |
| NdeII | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| NlaIV | GGNNCC | 6 cut(s) | 282, 433, 718, 1393, 1472, 1988 |
| NmuCI | GTSAC | 5 cut(s) | 928, 1279, 2210, 2533, 2591 |
| NruI | TCGCGA | 1 cut(s) | 950 |
| NspI | RCATGY | 2 cut(s) | 578, 1443 |
| PciI | ACATGT | 1 cut(s) | 574 |
| PciSI | GCTCTTC | 3 cut(s) | 201, 378, 657 |
| PctI | GAATGC | 1 cut(s) | 1703 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1087 |
| PfeI | GAWTC | 2 cut(s) | 1213, 1743 |
| PleI | GAGTC | 3 cut(s) | 38, 2515, 2542 |
| PmaCI | CACGTG | 2 cut(s) | 569, 659 |
| PmlI | CACGTG | 2 cut(s) | 569, 659 |
| PpsI | GAGTC | 3 cut(s) | 38, 2515, 2542 |
| Ppu21I | YACGTR | 4 cut(s) | 569, 659, 1625, 1911 |
| PpuMI | RGGWCCY | 1 cut(s) | 1392 |
| PscI | ACATGT | 1 cut(s) | 574 |
| PshAI | GACNNNNGTC | 1 cut(s) | 597 |
| PshBI | ATTAAT | 2 cut(s) | 1671, 2169 |
| Psp124BI | GAGCTC | 1 cut(s) | 1054 |
| Psp5II | RGGWCCY | 1 cut(s) | 1392 |
| Psp6I | CCWGG | 4 cut(s) | 1369, 1657, 2036, 2595 |
| PspCI | CACGTG | 2 cut(s) | 569, 659 |
| PspFI | CCCAGC | 1 cut(s) | 2384 |
| PspGI | CCWGG | 4 cut(s) | 1369, 1657, 2036, 2595 |
| PspN4I | GGNNCC | 6 cut(s) | 282, 433, 718, 1393, 1472, 1988 |
| PspPI | GGNCC | 6 cut(s) | 452, 716, 1373, 1392, 1714, 1987 |
| PspPPI | RGGWCCY | 1 cut(s) | 1392 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1376 |
| PsuI | RGATCY | 4 cut(s) | 163, 361, 1470, 1936 |
| PvuII | CAGCTG | 1 cut(s) | 2310 |
| RruI | TCGCGA | 1 cut(s) | 950 |
| RsaI | GTAC | 4 cut(s) | 1087, 2185, 2224, 2392 |
| RsaNI | GTAC | 4 cut(s) | 1086, 2184, 2223, 2391 |
| RseI | CAYNNNNRTG | 2 cut(s) | 900, 1104 |
| SacI | GAGCTC | 1 cut(s) | 1054 |
| SapI | GCTCTTC | 3 cut(s) | 201, 378, 657 |
| Sau3AI | GATC | 8 cut(s) | 163, 361, 670, 684, 967, 1078, 1470, 1936 |
| Sau96I | GGNCC | 6 cut(s) | 452, 716, 1373, 1392, 1714, 1987 |
| ScaI | AGTACT | 2 cut(s) | 1087, 2185 |
| SchI | GAGTC | 3 cut(s) | 38, 2515, 2542 |
| ScrFI | CCNGG | 5 cut(s) | 1371, 1659, 1985, 2038, 2597 |
| SduI | GDGCHC | 7 cut(s) | 300, 436, 566, 1054, 1369, 1918, 2563 |
| SfaNI | GCATC | 3 cut(s) | 763, 1003, 1014 |
| SinI | GGWCC | 3 cut(s) | 716, 1392, 1714 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 900, 1104 |
| SmlI | CTYRAG | 1 cut(s) | 1896 |
| SmoI | CTYRAG | 1 cut(s) | 1896 |
| SpeI | ACTAGT | 2 cut(s) | 638, 1835 |
| SsiI | CCGC | 7 cut(s) | 191, 878, 1298, 2174, 2305, 2577, 2615 |
| SspI | AATATT | 3 cut(s) | 22, 67, 2515 |
| SspMI | CTAG | 7 cut(s) | 408, 639, 926, 1362, 1836, 2202, 2481 |
| SstI | GAGCTC | 1 cut(s) | 1054 |
| StyD4I | CCNGG | 5 cut(s) | 1369, 1657, 1983, 2036, 2595 |
| StyI | CCWWGG | 2 cut(s) | 395, 1110 |
| TaaI | ACNGT | 6 cut(s) | 804, 1198, 2055, 2141, 2227, 2539 |
| TaiI | ACGT | 6 cut(s) | 389, 571, 661, 1627, 1913, 2236 |
| TaqI | TCGA | 1 cut(s) | 1081 |
| TaqII | GACCGA | 1 cut(s) | 1731 |
| TatI | WGTACW | 2 cut(s) | 1085, 2183 |
| TauI | GCSGC | 2 cut(s) | 194, 2618 |
| TfiI | GAWTC | 2 cut(s) | 1213, 1743 |
| TscAI | CASTG | 4 cut(s) | 1153, 2053, 2448, 2542 |
| TseFI | GTSAC | 5 cut(s) | 928, 1279, 2210, 2533, 2591 |
| Tsp45I | GTSAC | 5 cut(s) | 928, 1279, 2210, 2533, 2591 |
| TspDTI | ATGAA | 9 cut(s) | 17, 215, 506, 755, 1305, 1499, 2155, 2237, 2420 |
| TspRI | CASTG | 4 cut(s) | 1153, 2053, 2448, 2542 |
| VpaK11BI | GGWCC | 3 cut(s) | 716, 1392, 1714 |
| VspI | ATTAAT | 2 cut(s) | 1671, 2169 |
| XapI | RAATTY | 2 cut(s) | 157, 760 |
| XceI | RCATGY | 2 cut(s) | 578, 1443 |
| XmiI | GTMKAC | 1 cut(s) | 2260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1087 |
| XspI | CTAG | 7 cut(s) | 408, 639, 926, 1362, 1836, 2202, 2481 |
| ZrmI | AGTACT | 2 cut(s) | 1087, 2185 |