Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001178

Physical Location & Seq

Genomic Coordinates Forward (+)

4614357 .. 4617444

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G064500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATGGCTGGAAACCCTAACTGGTGGAGCAGCATGCATCCACCGTCTCTCTTCCCTTCTCAATATGTGCAGCTTGGATCTTCTAATTCACTCCCTCTGAATTCTTTGCCTGAACATAACCTAGAGCCTCCACAGTCCTGGAGCCAATTACTTTTGGGTGGATTGTCCAGCCAAGAAGATGGCTTTGGTACTCTAAGTCATTTTCAACCTAAAGGCAGGTTGGAAAATTGGGAGGAGGACCAAATCTTGATCCCACAATATCCAAGGGCTCCTGTTGTTGATTTTATAAAGCAAGAGTCTAATTCCCAGAACAGCATTAACTTGTGCAATAATCCTCATGGAGATGAAGAATTTCAGCTGGCACCAAGCAGCAGGCCTGTTTGGTCCCCAGTTCAAATCATGCCAGTTTCTTCCCCTAGGTCTTGTGTCACTAGTTTAAGTAATAATAACATATTGGACTTCACCTATAACAAAGCTGACAATAAGAGGAACCAACATGCAGTTCACTCATCTGAGTGTAATAGCACTGCCACTGGTGGGATGTGCAAGAAGGCTAGGGTTCAACCATCTCCAAGCCAACCACCTCTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCCCTTCACCAACTGGTATCCCCATTTGGAAAGACTGACACTGCTTCAGTCTTGCTAGAAGCCATTGGGTATATCAGATTCCTTCAGGGTCAAATTGAGGCCCTCAGCTCCCCTTACTTGGGCAATGCCTCAAAAAACATGAGGAACCAACAGTCTGTTCAAGGAGAAAGGAATTGTGTATTTCCTGAAGACCCTGGTCAGCTGTTGAATGACAACTGCCTGAAAAGAAAAGGTGCTCCAAACCAGCATCCTTCATCACAAGATAAAGCAAAGGATCTAAGAAGTAAAGGGTTGTGCTTGGTTCCTGTGTCTTGCACTCAACATGTTGGGAGTGACAATGGAGCTGATTACTGGGCTCCGGCTTATGGGAGTGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

36.75

Weight (kDa)

7.1

Isoelectric Point (pI)

64.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20100 AT2G20100 AT2G20100 AT2G20100 AT4G29100 AT4G29100
fragaria_vesca	FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900
malus_domestica	MD02G1056800.v1.1 MD09G1208300.v1.1 MD15G1191400.v1.1 MD17G1190000.v1.1
prunus_persica	Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.7G225800_v2.0.a1
pyrus_communis	pycom02g04600 pycom09g12450 pycom15g17140 pycom17g19760
rosa_chinensis	RchiOBHm_Chr2g0091241 RchiOBHm_Chr2g0139261
rosa_laevigata	RLG00000016195 RLG00000019800
rosa_multiflora	Rmu_sc0002270.1_g000018 Rmu_sc0002525.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105520 Rroxscaffold_2G00150350
rosa_rugosa	Rorug02G0014700 Rorug02G0014800 Rorug02G0356100 Rorug02G0356200 Rorug02G0356300 Rorug02G0356400 Rorug02G0356500 Rorug02G0356600
rosa_samantha	Rh2AG060500 Rh2AG406100 Rh2BG059200 Rh2BG416700 Rh2CG061000 Rh2CG392400 Rh2DG059800 Rh2DG425800
rosa_wichuraiana	Rw2G004940 Rw2G032910 Rw2G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	361
AclWI	GGATC	3 cut(s)	85, 244, 906
AcsI	RAATTY	2 cut(s)	100, 350
AcuI	CTGAAG	3 cut(s)	654, 692, 831
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	4 cut(s)	537, 742, 743, 989
AflIII	ACRYGT	1 cut(s)	946
AgsI	TTSAA	5 cut(s)	206, 395, 563, 785, 832
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	137, 817
AjuI	GAANNNNNNNTTGG	6 cut(s)	168, 200, 486, 518, 765, 797
AluBI	AGCT	7 cut(s)	73, 358, 476, 607, 732, 826, 968
AluI	AGCT	7 cut(s)	73, 358, 476, 607, 732, 826, 968
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	85, 244, 906
AoxI	GGCC	2 cut(s)	374, 723
ApeKI	GCWGC	3 cut(s)	30, 70, 369
ApoI	RAATTY	2 cut(s)	100, 350
Asp700I	GAANNNNTTC	1 cut(s)	351
AspA2I	CCTAGG	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	238, 384, 724
AsuHPI	GGTGA	4 cut(s)	454, 604, 623, 623
AvaII	GGWCC	2 cut(s)	238, 384
AvrII	CCTAGG	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	271, 982
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	862
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	42, 82, 381
BccI	CCATC	2 cut(s)	173, 574
BciT130I	CCWGG	2 cut(s)	139, 819
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	6 cut(s)	122, 417, 432, 555, 608, 680
BfuAI	ACCTGC	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	3 cut(s)	31, 71, 370
BlnI	CCTAGG	1 cut(s)	416
BlsI	GCNGC	3 cut(s)	32, 72, 371
Bme1390I	CCNGG	2 cut(s)	139, 819
Bme18I	GGWCC	2 cut(s)	238, 384
BmgT120I	GGNCC	3 cut(s)	238, 384, 724
BmiI	GGNNCC	8 cut(s)	143, 270, 363, 386, 491, 770, 927, 981
BmrFI	CCNGG	2 cut(s)	139, 819
BmrI	ACTGGG	2 cut(s)	383, 985
BmsI	GCATC	2 cut(s)	46, 880
BmuI	ACTGGG	2 cut(s)	383, 985
BoxI	GACNNNNGTC	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	728
BsaJI	CCNNGG	3 cut(s)	263, 416, 817
Bsc4I	CCNNNNNNNGG	4 cut(s)	537, 742, 743, 989
Bse1I	ACTGG	6 cut(s)	26, 389, 404, 538, 642, 980
Bse3DI	GCAATG	1 cut(s)	754
BseBI	CCWGG	2 cut(s)	139, 819
BseDI	CCNNGG	3 cut(s)	263, 416, 817
BseGI	GGATG	3 cut(s)	37, 546, 871
BseLI	CCNNNNNNNGG	4 cut(s)	537, 742, 743, 989
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	2 cut(s)	504, 742
BseNI	ACTGG	6 cut(s)	26, 389, 404, 538, 642, 980
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	42, 82, 381
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	376, 725
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	1 cut(s)	983
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	4 cut(s)	537, 742, 743, 989
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	376, 725
Bsp1286I	GDGCHC	3 cut(s)	271, 862, 982
Bsp143I	GATC	3 cut(s)	77, 249, 898
BspANI	GGCC	2 cut(s)	376, 725
BspCNI	CTCAG	2 cut(s)	505, 741
BspLI	GGNNCC	8 cut(s)	143, 270, 363, 386, 491, 770, 927, 981
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	85, 244, 906
BspT107I	GGYRCC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	754
BsrI	ACTGG	6 cut(s)	26, 389, 404, 538, 642, 980
BssECI	CCNNGG	3 cut(s)	263, 416, 817
BssMI	GATC	3 cut(s)	77, 249, 898
BssT1I	CCWWGG	2 cut(s)	263, 416
Bst2UI	CCWGG	2 cut(s)	139, 819
Bst4CI	ACNGT	3 cut(s)	45, 135, 777
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	35, 360, 374
BstDEI	CTNAG	4 cut(s)	194, 513, 728, 902
BstF5I	GGATG	3 cut(s)	37, 546, 871
BstKTI	GATC	3 cut(s)	80, 252, 901
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	77, 249, 898
BstNI	CCWGG	2 cut(s)	139, 819
BstNSI	RCATGY	3 cut(s)	37, 500, 950
BstPAI	GACNNNNGTC	1 cut(s)	819
BstSCI	CCNGG	2 cut(s)	137, 817
BstV1I	GCAGC	3 cut(s)	42, 82, 381
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	77, 898
BstXI	CCANNNNNNTGG	2 cut(s)	138, 179
BstYI	RGATCY	2 cut(s)	77, 898
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	2 cut(s)	376, 725
BtsCI	GGATG	3 cut(s)	37, 546, 871
BtsI	GCAGTG	2 cut(s)	525, 663
BtsIMutI	CAGTG	3 cut(s)	525, 531, 663
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	35, 360, 374
Cfr13I	GGNCC	3 cut(s)	238, 384, 724
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	6 cut(s)	34, 338, 400, 497, 763, 947
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	4 cut(s)	194, 513, 728, 902
DpnI	GATC	3 cut(s)	79, 251, 900
DpnII	GATC	3 cut(s)	77, 249, 898
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	263, 416
Eco147I	AGGCCT	1 cut(s)	376
Eco24I	GRGCYC	2 cut(s)	271, 982
Eco47I	GGWCC	2 cut(s)	238, 384
Eco57I	CTGAAG	3 cut(s)	654, 692, 831
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	137, 817
EcoT14I	CCWWGG	2 cut(s)	263, 416
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	271, 982
ErhI	CCWWGG	2 cut(s)	263, 416
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	6 cut(s)	37, 341, 403, 500, 766, 950
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	6 cut(s)	33, 337, 399, 496, 762, 946
Fnu4HI	GCNGC	3 cut(s)	31, 71, 370
FokI	GGATG	3 cut(s)	24, 553, 858
FriOI	GRGCYC	2 cut(s)	271, 982
Fsp4HI	GCNGC	3 cut(s)	31, 71, 370
FspBI	CTAG	6 cut(s)	122, 417, 432, 555, 608, 680
GluI	GCNGC	3 cut(s)	31, 71, 370
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	376, 725
HapII	CCGG	1 cut(s)	983
Hin1II	CATG	6 cut(s)	37, 341, 403, 500, 766, 950
HinfI	GANTC	2 cut(s)	296, 702
HpaII	CCGG	1 cut(s)	983
HphI	GGTGA	4 cut(s)	454, 604, 623, 623
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	3 cut(s)	99, 514, 701
Hpy188III	TCNNGA	2 cut(s)	247, 809
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	6 cut(s)	66, 544, 592, 638, 716, 885
HpyCH4III	ACNGT	3 cut(s)	45, 135, 777
HpyCH4V	TGCA	6 cut(s)	37, 70, 327, 500, 546, 939
HpyF3I	CTNAG	4 cut(s)	194, 513, 728, 902
Hsp92II	CATG	6 cut(s)	37, 341, 403, 500, 766, 950
Kzo9I	GATC	3 cut(s)	77, 249, 898
LmnI	GCTCC	7 cut(s)	27, 141, 274, 737, 865, 965, 985
Lsp1109I	GCAGC	3 cut(s)	42, 82, 381
LweI	GCATC	2 cut(s)	46, 880
MaeI	CTAG	6 cut(s)	122, 417, 432, 555, 608, 680
MaeIII	GTNAC	2 cut(s)	427, 956
MalI	GATC	3 cut(s)	79, 251, 900
MboI	GATC	3 cut(s)	77, 249, 898
MboII	GAAGA	6 cut(s)	43, 72, 188, 359, 402, 824
MflI	RGATCY	2 cut(s)	77, 898
MhlI	GDGCHC	3 cut(s)	271, 862, 982
MluCI	AATT	8 cut(s)	85, 100, 146, 226, 301, 350, 717, 796
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	201
Mph1103I	ATGCAT	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	318, 437
MslI	CAYNNNNRTG	2 cut(s)	342, 514
MspA1I	CMGCKG	2 cut(s)	358, 826
MspI	CCGG	1 cut(s)	983
MspR9I	CCNGG	2 cut(s)	139, 819
MvaI	CCWGG	2 cut(s)	139, 819
NdeII	GATC	3 cut(s)	77, 249, 898
NlaIII	CATG	6 cut(s)	37, 341, 403, 500, 766, 950
NlaIV	GGNNCC	8 cut(s)	143, 270, 363, 386, 491, 770, 927, 981
NmuCI	GTSAC	2 cut(s)	427, 956
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	3 cut(s)	37, 500, 950
PaeI	GCATGC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	376
PciI	ACATGT	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	702
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	32, 72, 371
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PscI	ACATGT	1 cut(s)	946
PshAI	GACNNNNGTC	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	137, 817
PspGI	CCWGG	2 cut(s)	137, 817
PspN4I	GGNNCC	8 cut(s)	143, 270, 363, 386, 491, 770, 927, 981
PspPI	GGNCC	3 cut(s)	238, 384, 724
PsuI	RGATCY	2 cut(s)	77, 898
PvuII	CAGCTG	2 cut(s)	358, 826
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	2 cut(s)	342, 514
SaqAI	TTAA	2 cut(s)	318, 437
SatI	GCNGC	3 cut(s)	31, 71, 370
Sau3AI	GATC	3 cut(s)	77, 249, 898
Sau96I	GGNCC	3 cut(s)	238, 384, 724
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	139, 819
SduI	GDGCHC	3 cut(s)	271, 862, 982
SfaNI	GCATC	2 cut(s)	46, 880
SinI	GGWCC	2 cut(s)	238, 384
SmiMI	CAYNNNNRTG	2 cut(s)	342, 514
SpeI	ACTAGT	1 cut(s)	431
SphI	GCATGC	1 cut(s)	37
Sse9I	AATT	8 cut(s)	85, 100, 146, 226, 301, 350, 717, 796
SseBI	AGGCCT	1 cut(s)	376
SspMI	CTAG	6 cut(s)	122, 417, 432, 555, 608, 680
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	137, 817
StyI	CCWWGG	2 cut(s)	263, 416
TaaI	ACNGT	3 cut(s)	45, 135, 777
TasI	AATT	8 cut(s)	85, 100, 146, 226, 301, 350, 717, 796
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	2 cut(s)	318, 437
Tru9I	TTAA	2 cut(s)	318, 437
TscAI	CASTG	3 cut(s)	532, 538, 670
TseFI	GTSAC	2 cut(s)	427, 956
TseI	GCWGC	3 cut(s)	30, 70, 369
Tsp45I	GTSAC	2 cut(s)	427, 956
TspDTI	ATGAA	2 cut(s)	360, 867
TspRI	CASTG	3 cut(s)	532, 538, 670
VpaK11BI	GGWCC	2 cut(s)	238, 384
XapI	RAATTY	2 cut(s)	100, 350
XceI	RCATGY	3 cut(s)	37, 500, 950
XmaJI	CCTAGG	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	6 cut(s)	122, 417, 432, 555, 608, 680
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.