Rorug02G0356300
BHLH Family

Transcription factor bHLH68-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001178
Physical Location & Seq
Reverse (-)
45007870 .. 45009039
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0356300.1

Sequence Viewer

Length: 1170 bp
ATGCGAACTCGCTACCCTATATTATCTAGTTCCAAAGTGAGTTATCGCAAATCCTCAATCTGGCCAGGTTTCCGCTCTATTACTCTTCATATCACCCACAATTGTCGTTGGATTATTGGAGATGGTCGTTCAGTGTCCTTCTGGAAAGATAAATGGCTTCAAGATCCAATTTTGGAAATTTTGGGTTTTTTCGACTGGTCAGGAATTAGTGATCTTCGAGTGGCAGATTTCATCTCAGATCATTCTTGGCAGTTTCCCTCTTTTTTCCTTGATACCTTTCCAGACTTGTACAGAAAAATTTCTGATATTTGTCTCCCTTTAGATACAGAACCTGATATGCTCATTTGGGAGTCTACAGCCTCTGGAGAGTTATCTTTCACTGATTCTTATAACTTGCTTAGACGACACTTTATTTTGAGAGATTGGGCTTCTACTATTTGGCATCCCTTCATTCCTCCACTATATTCTTTCTTGGCTTGGAGGATTTTCTTTGATCGCGTGCCCACTGATGATCGACTGAAAAGAGGTGGGATTCCGGTTGTGTCCATCTGCCAATTATGCAACAGTTCGGCAGAGTCAGCCTTACACTTATTTTTACATTGTCCTTTTTCCCAACATCTTTGGGGATGGCTGGCAACTCAGTTTGGAACCTCATTTCCTGCTTATGGCTCACTGTTGGATTTTTGGGTGGGCTTTTGTCACAAGGGTTTTTCCCCTCAGCTTTATAATTTGTGGTTGGCAGCTGGATTGCTTACTTTCATGGAAATTTGGAAGGCGCGAAATAGACTCAGGTTTGATAATCGTTCTCCTATTTTTTCTACACTGTGTTGTTCAATTATGGCATGGATTCGGCAATTTGGTTCTTTTGTTCCTGGTTACTATAAGGGCGTCCTTGATTCCCGACTTCTTTCTTCCCTTGGGGTGTGCCCCAAGCCCCGTAAAGCGCCCAAGATTCAACGTGTCCTATGGCATCCCCCCCTCCTTCCTTGGGTTAAAGTTAACACTGATGGTCTGGCGAAAGGTAATCCTGGCCCTGCAGCTTGTGGGGGAGTTTTTCGTGATGCATCTGGGGTTTATTTAGGGAGTTTTTGCCAACCTCTTGGTCGCAATTCTTCCTTTTATGCTGAACTTTGTGCTGTTATTGTGTCTATTGAAGTTGCATTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

44.53

Weight (kDa)

8.98

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 126 - 208 7.8e-22 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 390, 726
AccBSI CCGCTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 353
AccII CGCG 2 cut(s) 498, 778
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 3 cut(s) 177, 297, 765
AcyI GRCGYC 1 cut(s) 888
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 60, 665, 988
AflIII ACRYGT 1 cut(s) 958
AgsI TTSAA 4 cut(s) 161, 834, 956, 1154
AjnI CCWGG 3 cut(s) 64, 871, 1027
AloI GAACNNNNNNTCC 2 cut(s) 640, 672
AluBI AGCT 3 cut(s) 721, 743, 1040
AluI AGCT 3 cut(s) 721, 743, 1040
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 2 cut(s) 332, 362
AoxI GGCC 2 cut(s) 62, 1030
ApeKI GCWGC 2 cut(s) 740, 1037
ApoI RAATTY 3 cut(s) 177, 297, 765
Asp700I GAANNNNTTC 1 cut(s) 298
AspLEI GCGC 2 cut(s) 778, 946
AspS9I GGNCC 1 cut(s) 1031
AsuHPI GGTGA 1 cut(s) 85
BaeGI GKGCMC 2 cut(s) 504, 929
BalI TGGCCA 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 752, 1049
BccI CCATC 4 cut(s) 116, 554, 621, 1001
BciT130I CCWGG 3 cut(s) 66, 873, 1029
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 2 cut(s) 354, 1035
BfoI RGCGCY 1 cut(s) 947
BisI GCNGC 2 cut(s) 741, 1038
BlsI GCNGC 2 cut(s) 742, 1039
Bme1390I CCNGG 3 cut(s) 66, 873, 1029
BmgT120I GGNCC 1 cut(s) 1031
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 3 cut(s) 66, 873, 1029
BmsI GCATC 4 cut(s) 451, 979, 1051, 1073
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 2 cut(s) 916, 986
BsaWI WCCGGW 1 cut(s) 535
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 665, 988
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 3 cut(s) 66, 873, 1029
BseDI CCNNGG 2 cut(s) 916, 986
BseGI GGATG 3 cut(s) 442, 632, 970
BseLI CCNNNNNNNGG 3 cut(s) 60, 665, 988
BseMII CTCAG 4 cut(s) 249, 653, 731, 802
BseNI ACTGG 1 cut(s) 200
BseSI GKGCMC 2 cut(s) 504, 929
BseXI GCAGC 2 cut(s) 752, 1049
Bsh1236I CGCG 2 cut(s) 498, 778
BshFI GGCC 2 cut(s) 64, 1032
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 60, 665, 988
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 1160
BsnI GGCC 2 cut(s) 64, 1032
Bsp1286I GDGCHC 2 cut(s) 504, 929
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 5 cut(s) 163, 211, 238, 493, 511
BspACI CCGC 1 cut(s) 73
BspANI GGCC 2 cut(s) 64, 1032
BspCNI CTCAG 4 cut(s) 248, 652, 730, 801
BspFNI CGCG 2 cut(s) 498, 778
BspLI GGNNCC 1 cut(s) 649
BspMAI CTGCAG 1 cut(s) 1039
BspPI GGATC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 916, 986
BssMI GATC 5 cut(s) 163, 211, 238, 493, 511
BssNI GRCGYC 1 cut(s) 888
BssT1I CCWWGG 2 cut(s) 916, 986
Bst2UI CCWGG 3 cut(s) 66, 873, 1029
Bst4CI ACNGT 3 cut(s) 566, 675, 825
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 888
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 500, 633
BstDEI CTNAG 5 cut(s) 235, 398, 639, 717, 788
BstF5I GGATG 3 cut(s) 442, 632, 970
BstFNI CGCG 2 cut(s) 498, 778
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 2 cut(s) 778, 946
BstKTI GATC 5 cut(s) 166, 214, 241, 496, 514
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 5 cut(s) 163, 211, 238, 493, 511
BstMWI GCNNNNNNNGC 2 cut(s) 558, 578
BstNI CCWGG 3 cut(s) 66, 873, 1029
BstSCI CCNGG 3 cut(s) 64, 871, 1027
BstSFI CTRYAG 2 cut(s) 354, 1035
BstSLI GKGCMC 2 cut(s) 504, 929
BstUI CGCG 2 cut(s) 498, 778
BstV1I GCAGC 2 cut(s) 752, 1049
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 1100
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 2 cut(s) 64, 1032
BtsCI GGATG 3 cut(s) 442, 632, 970
BtsIMutI CAGTG 6 cut(s) 138, 378, 504, 671, 821, 1002
Cac8I GCNNGC 2 cut(s) 500, 633
CaiI CAGNNNCTG 2 cut(s) 332, 362
CfoI GCGC 2 cut(s) 778, 946
Cfr13I GGNCC 1 cut(s) 1031
CseI GACGC 1 cut(s) 877
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 760, 843
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 5 cut(s) 235, 398, 639, 717, 788
DpnI GATC 5 cut(s) 165, 213, 240, 495, 513
DpnII GATC 5 cut(s) 163, 211, 238, 493, 511
EaeI YGGCCR 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 916, 986
EcoRII CCWGG 3 cut(s) 64, 871, 1027
EcoT14I CCWWGG 2 cut(s) 916, 986
EcoT22I ATGCAT 1 cut(s) 1066
ErhI CCWWGG 2 cut(s) 916, 986
FaeI CATG 2 cut(s) 763, 846
FatI CATG 2 cut(s) 759, 842
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 741, 1038
FokI GGATG 3 cut(s) 429, 639, 957
Fsp4HI GCNGC 2 cut(s) 741, 1038
FspBI CTAG 1 cut(s) 27
GlaI GCGC 2 cut(s) 777, 945
GluI GCNGC 2 cut(s) 741, 1038
GsuI CTGGAG 1 cut(s) 384
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 2 cut(s) 64, 1032
HapII CCGG 1 cut(s) 536
HgaI GACGC 1 cut(s) 877
HhaI GCGC 2 cut(s) 778, 946
Hin1I GRCGYC 1 cut(s) 888
Hin1II CATG 2 cut(s) 763, 846
Hin6I GCGC 2 cut(s) 776, 944
HinP1I GCGC 2 cut(s) 776, 944
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HinfI GANTC 8 cut(s) 350, 383, 532, 575, 786, 847, 896, 952
HpaI GTTAAC 1 cut(s) 1000
HpaII CCGG 1 cut(s) 536
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 354, 1000
Hpy188I TCNGA 2 cut(s) 238, 304
Hpy188III TCNNGA 7 cut(s) 142, 161, 201, 281, 363, 900, 1058
Hpy8I GTNNAC 2 cut(s) 354, 1000
HpyAV CCTTC 4 cut(s) 148, 457, 766, 992
HpyCH4III ACNGT 3 cut(s) 566, 675, 825
HpyCH4IV ACGT 1 cut(s) 958
HpyCH4V TGCA 4 cut(s) 561, 1037, 1064, 1160
HpyF10VI GCNNNNNNNGC 2 cut(s) 558, 578
HpyF3I CTNAG 5 cut(s) 235, 398, 639, 717, 788
HpySE526I ACGT 1 cut(s) 958
Hsp92I GRCGYC 1 cut(s) 888
Hsp92II CATG 2 cut(s) 763, 846
HspAI GCGC 2 cut(s) 776, 944
KspAI GTTAAC 1 cut(s) 1000
Kzo9I GATC 5 cut(s) 163, 211, 238, 493, 511
Lsp1109I GCAGC 2 cut(s) 752, 1049
LweI GCATC 4 cut(s) 451, 979, 1051, 1073
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 958
MaeIII GTNAC 2 cut(s) 698, 875
MalI GATC 5 cut(s) 165, 213, 240, 495, 513
MbiI CCGCTC 1 cut(s) 75
MboI GATC 5 cut(s) 163, 211, 238, 493, 511
MboII GAAGA 4 cut(s) 77, 206, 903, 1104
MfeI CAATTG 1 cut(s) 100
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 504, 929
MlsI TGGCCA 1 cut(s) 64
MluNI TGGCCA 1 cut(s) 64
MlyI GAGTC 3 cut(s) 359, 584, 780
MmeI TCCRAC 2 cut(s) 89, 657
Mox20I TGGCCA 1 cut(s) 64
Mph1103I ATGCAT 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 298
MscI TGGCCA 1 cut(s) 64
MseI TTAA 2 cut(s) 993, 999
Msp20I TGGCCA 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 3 cut(s) 66, 873, 1029
MunI CAATTG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 1160
MvaI CCWGG 3 cut(s) 66, 873, 1029
MvnI CGCG 2 cut(s) 498, 778
MwoI GCNNNNNNNGC 2 cut(s) 558, 578
NdeII GATC 5 cut(s) 163, 211, 238, 493, 511
NlaIII CATG 2 cut(s) 763, 846
NlaIV GGNNCC 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 698
NsiI ATGCAT 1 cut(s) 1066
PctI GAATGC 1 cut(s) 1160
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 5 cut(s) 383, 532, 847, 896, 952
PkrI GCNGC 2 cut(s) 742, 1039
PleI GAGTC 3 cut(s) 358, 583, 780
PpsI GAGTC 3 cut(s) 358, 583, 780
PsiI TTATAA 2 cut(s) 390, 726
Psp6I CCWGG 3 cut(s) 64, 871, 1027
PspGI CCWGG 3 cut(s) 64, 871, 1027
PspN4I GGNNCC 1 cut(s) 649
PspPI GGNCC 1 cut(s) 1031
PstI CTGCAG 1 cut(s) 1039
PstNI CAGNNNCTG 2 cut(s) 332, 362
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 2 cut(s) 993, 999
SatI GCNGC 2 cut(s) 741, 1038
Sau3AI GATC 5 cut(s) 163, 211, 238, 493, 511
Sau96I GGNCC 1 cut(s) 1031
SchI GAGTC 3 cut(s) 359, 584, 780
ScrFI CCNGG 3 cut(s) 66, 873, 1029
SduI GDGCHC 2 cut(s) 504, 929
SfaNI GCATC 4 cut(s) 451, 979, 1051, 1073
SfcI CTRYAG 2 cut(s) 354, 1035
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 3 cut(s) 64, 871, 1027
StyI CCWWGG 2 cut(s) 916, 986
TaaI ACNGT 3 cut(s) 566, 675, 825
TaiI ACGT 1 cut(s) 961
TaqI TCGA 3 cut(s) 192, 217, 514
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 5 cut(s) 383, 532, 847, 896, 952
Tru1I TTAA 2 cut(s) 993, 999
Tru9I TTAA 2 cut(s) 993, 999
TscAI CASTG 6 cut(s) 138, 385, 511, 678, 828, 1009
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 2 cut(s) 740, 1037
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 4 cut(s) 77, 220, 439, 748
TspRI CASTG 6 cut(s) 138, 385, 511, 678, 828, 1009
XapI RAATTY 3 cut(s) 177, 297, 765
XmiI GTMKAC 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 298
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.