Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002525.1

Orthogroup ID

OG0001178

Physical Location & Seq

Genomic Coordinates Reverse (-)

16279 .. 19005

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002525.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggccggaaaccctaactggtggagcacgcatccaccgtcatctatcttcccttctcaatatgtgcttggatcttctaattcactccctcagctcaattcattccctgatcagcataacctacagcctccacaatcttggagccaattacttctgggcggattgtccggagaagatcaagacaactttggaagtttgaatcattttccacctaaaaggttggaaaattgggaggatcatcagcagcaaatattgattccacagtcgtatccaagggttaatcctgttgttgacagtaatattataaagcaagaggttaattcccagaacaacagcaacttgtgtggtggagatggaggagaagaatttcaggcaccttataataataggccatcttggtcagcagcacaaatcaacatgccagtttcatcccctaggtcttgtatcactagtttaagtagtaataatatcttggacttttcctataaccagaaaaaccaacatgcagatcactcatctgagtgcaatagtcctcccaccgacggaatgtgcaagaaagctagggttcaaccatcttcaagccaaccaccattaaaggtgagaaaggagaagctaggagatagaataacagcccttcatcaaatagtttccccatttggaaagactgacactgcttctgtcttgttagaagccattgggtatatcagattcctccagagtcaaattgaggccctcagctccccttacttgggcaatgcctccaaaaacatgaggaataatccccactctgttcaaggagaaaggaattgtgtgtttcctgaagaccctggtcagctgttgaatgacaactgcagcctgaaaagaaaaggggcttctaaccaggattctcatcaagactataaggcaaaggatttaagaagtaaaggattgtgtttggttcctgtttcttgcactcagaatgttgggggtgacattaacattggagctgattattgggctccggcttatgggagcgggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.4

Weight (kDa)

6.3

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20100 AT2G20100 AT2G20100 AT2G20100 AT4G29100 AT4G29100
fragaria_vesca	FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_1g05540 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900 FvH4_6g31900
malus_domestica	MD02G1056800.v1.1 MD09G1208300.v1.1 MD15G1191400.v1.1 MD17G1190000.v1.1
prunus_persica	Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.3G064500_v2.0.a1 Prupe.7G225800_v2.0.a1
pyrus_communis	pycom02g04600 pycom09g12450 pycom15g17140 pycom17g19760
rosa_chinensis	RchiOBHm_Chr2g0091241 RchiOBHm_Chr2g0139261
rosa_laevigata	RLG00000016195 RLG00000019800
rosa_multiflora	Rmu_sc0002270.1_g000018 Rmu_sc0002525.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105520 Rroxscaffold_2G00150350
rosa_rugosa	Rorug02G0014700 Rorug02G0014800 Rorug02G0356100 Rorug02G0356200 Rorug02G0356300 Rorug02G0356400 Rorug02G0356500 Rorug02G0356600
rosa_samantha	Rh2AG060500 Rh2AG406100 Rh2BG059200 Rh2BG416700 Rh2CG061000 Rh2CG392400 Rh2DG059800 Rh2DG425800
rosa_wichuraiana	Rw2G004940 Rw2G032910 Rw2G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	305, 381
AccB1I	GGYRCC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	1014
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	2 cut(s)	159, 1014
AclWI	GGATC	2 cut(s)	79, 243
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	840
AfiI	CCNNNNNNNGG	4 cut(s)	542, 748, 749, 1007
AgsI	TTSAA	5 cut(s)	199, 569, 579, 794, 841
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	2 cut(s)	826, 879
AluBI	AGCT	6 cut(s)	94, 560, 613, 738, 835, 986
AluI	AGCT	6 cut(s)	94, 560, 613, 738, 835, 986
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	79, 243
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	3 cut(s)	3, 389, 729
ApeKI	GCWGC	3 cut(s)	244, 404, 852
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	366
AspA2I	CCTAGG	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	730
AsuHPI	GGTGA	2 cut(s)	610, 980
AvrII	CCTAGG	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	251, 284
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	1000
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	29
BbvCI	CCTCAGC	2 cut(s)	90, 734
BbvI	GCAGC	3 cut(s)	256, 416, 864
BccI	CCATC	3 cut(s)	347, 400, 580
BciT130I	CCWGG	2 cut(s)	828, 881
BciVI	GTATCC	1 cut(s)	279
BclI	TGATCA	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	4 cut(s)	435, 450, 561, 614
BfmI	CTRYAG	2 cut(s)	122, 850
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	3 cut(s)	245, 405, 853
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	3 cut(s)	246, 406, 854
Bme1390I	CCNGG	2 cut(s)	828, 881
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	4 cut(s)	143, 375, 939, 999
BmrFI	CCNGG	2 cut(s)	828, 881
BmsI	GCATC	1 cut(s)	40
BoxI	GACNNNNGTC	1 cut(s)	828
BpiI	GAAGAC	1 cut(s)	828
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	2 cut(s)	90, 734
BsaBI	GATNNNNATC	1 cut(s)	888
BsaJI	CCNNGG	3 cut(s)	272, 434, 826
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	4 cut(s)	542, 748, 749, 1007
Bse1I	ACTGG	2 cut(s)	23, 422
Bse3DI	GCAATG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	888
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	828, 881
BseDI	CCNNGG	3 cut(s)	272, 434, 826
BseGI	GGATG	2 cut(s)	31, 428
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	4 cut(s)	542, 748, 749, 1007
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	4 cut(s)	104, 510, 748, 968
BseNI	ACTGG	2 cut(s)	23, 422
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	256, 416, 864
BshFI	GGCC	3 cut(s)	5, 391, 731
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	6, 168, 1001
BslI	CCNNNNNNNGG	4 cut(s)	542, 748, 749, 1007
BsnI	GGCC	3 cut(s)	5, 391, 731
Bsp1286I	GDGCHC	2 cut(s)	29, 1000
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	71, 109, 175, 235, 508
BspACI	CCGC	2 cut(s)	159, 1014
BspANI	GGCC	3 cut(s)	5, 391, 731
BspCNI	CTCAG	4 cut(s)	103, 511, 747, 967
BspEI	TCCGGA	1 cut(s)	167
BspLI	GGNNCC	4 cut(s)	143, 375, 939, 999
BspMAI	CTGCAG	1 cut(s)	854
BspPI	GGATC	2 cut(s)	79, 243
BspT107I	GGYRCC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	1014
BsrDI	GCAATG	1 cut(s)	760
BsrI	ACTGG	2 cut(s)	23, 422
BssECI	CCNNGG	3 cut(s)	272, 434, 826
BssMI	GATC	5 cut(s)	71, 109, 175, 235, 508
BssT1I	CCWWGG	2 cut(s)	272, 434
Bst2UI	CCWGG	2 cut(s)	828, 881
Bst4CI	ACNGT	3 cut(s)	39, 264, 296
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	90, 519, 734, 954
BstF5I	GGATG	2 cut(s)	31, 428
BstKTI	GATC	5 cut(s)	74, 112, 178, 238, 511
BstMBI	GATC	5 cut(s)	71, 109, 175, 235, 508
BstNI	CCWGG	2 cut(s)	828, 881
BstNSI	RCATGY	2 cut(s)	421, 506
BstPAI	GACNNNNGTC	1 cut(s)	828
BstSCI	CCNGG	2 cut(s)	826, 879
BstSFI	CTRYAG	2 cut(s)	122, 850
BstV1I	GCAGC	3 cut(s)	256, 416, 864
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	5, 391, 731
BtsCI	GGATG	2 cut(s)	31, 428
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	730
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	3 cut(s)	418, 503, 769
DdeI	CTNAG	4 cut(s)	90, 519, 734, 954
DpnI	GATC	5 cut(s)	73, 111, 177, 237, 510
DpnII	GATC	5 cut(s)	71, 109, 175, 235, 508
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	272, 434
Eco24I	GRGCYC	1 cut(s)	1000
Eco57I	CTGAAG	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	2 cut(s)	826, 879
EcoT14I	CCWWGG	2 cut(s)	272, 434
EcoT38I	GRGCYC	1 cut(s)	1000
ErhI	CCWWGG	2 cut(s)	272, 434
FaeI	CATG	3 cut(s)	421, 506, 772
FatI	CATG	3 cut(s)	417, 502, 768
FauI	CCCGC	1 cut(s)	1007
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	245, 405, 853
FokI	GGATG	2 cut(s)	18, 415
FriOI	GRGCYC	1 cut(s)	1000
Fsp4HI	GCNGC	3 cut(s)	245, 405, 853
FspBI	CTAG	4 cut(s)	435, 450, 561, 614
GluI	GCNGC	3 cut(s)	245, 405, 853
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	5, 391, 731
HapII	CCGG	3 cut(s)	6, 168, 1001
Hin1II	CATG	3 cut(s)	421, 506, 772
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	5 cut(s)	199, 256, 708, 718, 884
HpaII	CCGG	3 cut(s)	6, 168, 1001
HphI	GGTGA	2 cut(s)	610, 980
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	520, 707, 957
Hpy188III	TCNNGA	5 cut(s)	168, 179, 715, 818, 893
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	63, 644
HpyCH4III	ACNGT	3 cut(s)	39, 264, 296
HpyCH4V	TGCA	5 cut(s)	506, 525, 552, 852, 951
HpyF3I	CTNAG	4 cut(s)	90, 519, 734, 954
Hsp92II	CATG	3 cut(s)	421, 506, 772
Kpn2I	TCCGGA	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	71, 109, 175, 235, 508
LmnI	GCTCC	6 cut(s)	24, 141, 743, 983, 1003, 1011
Lsp1109I	GCAGC	3 cut(s)	256, 416, 864
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	4 cut(s)	435, 450, 561, 614
MaeIII	GTNAC	1 cut(s)	968
MalI	GATC	5 cut(s)	73, 111, 177, 237, 510
MbiI	CCGCTC	1 cut(s)	1014
MboI	GATC	5 cut(s)	71, 109, 175, 235, 508
MboII	GAAGA	6 cut(s)	40, 66, 185, 374, 567, 833
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	29, 1000
MluCI	AATT	8 cut(s)	79, 97, 146, 226, 319, 365, 723, 805
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	1 cut(s)	201
MroI	TCCGGA	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	6 cut(s)	279, 318, 455, 593, 914, 975
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	835
MspI	CCGG	3 cut(s)	6, 168, 1001
MspR9I	CCNGG	2 cut(s)	828, 881
MvaI	CCWGG	2 cut(s)	828, 881
NdeII	GATC	5 cut(s)	71, 109, 175, 235, 508
NlaIII	CATG	3 cut(s)	421, 506, 772
NlaIV	GGNNCC	4 cut(s)	143, 375, 939, 999
NmuCI	GTSAC	1 cut(s)	968
NspI	RCATGY	2 cut(s)	421, 506
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	199, 256, 708, 884
PkrI	GCNGC	3 cut(s)	246, 406, 854
PleI	GAGTC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	726
PshAI	GACNNNNGTC	1 cut(s)	828
PsiI	TTATAA	2 cut(s)	305, 381
Psp6I	CCWGG	2 cut(s)	826, 879
PspGI	CCWGG	2 cut(s)	826, 879
PspN4I	GGNNCC	4 cut(s)	143, 375, 939, 999
PspPI	GGNCC	1 cut(s)	730
PstI	CTGCAG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	835
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	6 cut(s)	279, 318, 455, 593, 914, 975
SatI	GCNGC	3 cut(s)	245, 405, 853
Sau3AI	GATC	5 cut(s)	71, 109, 175, 235, 508
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	2 cut(s)	828, 881
SduI	GDGCHC	2 cut(s)	29, 1000
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	2 cut(s)	122, 850
SmiMI	CAYNNNNRTG	1 cut(s)	520
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	8 cut(s)	79, 97, 146, 226, 319, 365, 723, 805
SsiI	CCGC	2 cut(s)	159, 1014
SspI	AATATT	2 cut(s)	252, 301
SspMI	CTAG	4 cut(s)	435, 450, 561, 614
StyD4I	CCNGG	2 cut(s)	826, 879
StyI	CCWWGG	2 cut(s)	272, 434
TaaI	ACNGT	3 cut(s)	39, 264, 296
TasI	AATT	8 cut(s)	79, 97, 146, 226, 319, 365, 723, 805
TfiI	GAWTC	4 cut(s)	199, 256, 708, 884
Tru1I	TTAA	6 cut(s)	279, 318, 455, 593, 914, 975
Tru9I	TTAA	6 cut(s)	279, 318, 455, 593, 914, 975
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	3 cut(s)	244, 404, 852
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	3 cut(s)	90, 417, 626
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	676
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	2 cut(s)	421, 506
XmaJI	CCTAGG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	4 cut(s)	435, 450, 561, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.