FvH4_6g31900
BHLH Family

Transcription factor bHLH68-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001178
Physical Location & Seq
Reverse (-)
24995931 .. 24999234
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31900.t4

Sequence Viewer

Length: 972 bp
ATGATGGCCGGAAACCCTAACTGGTGGAGCATGCATCCACCATCATCTATCTTCCCTTCTCAACTTGGATCTTCTAGTTCACTCCCTCAGCTTATCAATTCCTTCCCTACTGATCAGCATAACCTAGAGCCTCCACAATCTTGGAGCCAATTACTTCTGGGTGGATTGTCTGGACAAGATCAAGACAACTTTGGAAGTCTGAATCATTTTCCACAGTCTTATCCAAGGGTTAATCCTGCTGTTGATAGTAATATTATAAAGCAAGAGATTAATTCCCAGAACAACTTGTATGGTGGTGACGGAGGACATGAAGAATTTCAGGCACCTTATATTAATAGGCCATCTTGGTCAGCAGTACAAATCAACATGCCGGTTTCATCCCCTAGGTCTTGTGTCACTAGTTTAAGTAGTAATAATATGTTGGATTTTTCCTATAACCAGAAGAACCAGCATGCAGATCACTCATCTGAGTGTGATAGTCCTCCCGCCGGCGGAATGTGCAAGAAAGCTAGGGTTCAACCATCTTCAAGCCAACCACCACTAAAGGTGAGAAAGGAGAAGCTAGGAGATAGAATAACTGCCCTTCACCAAATAGTTTCCCCATTTGGAAAGACTGACACTGCTTCTGTCTTGTTAGAAGCCATTGGGTACATCAGATTCCTTCAGAGTCAAATTGAGGCCCTCAGCTCCCCTTACTTGGGTAATGCCTCCAAAAACATGAGGCATAACCCCCACTCTGTTCAAGGAGAAAGGAATTGTGTGTTCCCTGAAGACCCTGGTCAGCTCTTGAATGACAATTGCAGCCTGAAAAGAAAAGGGTCTCCTAACCAGGATTCTCATCAAGACCATAAGGCAAAGGATCTAAGGAGTAAAGGGTTGTGCTTGGTTCCCGTTTCTTGCACTCAGAATGTTGGGGGTGACATTAACATCGGAGCTGATTATTGGGCTCCGGCTTATGGGAGCGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

35.31

Weight (kDa)

6.58

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 963
AciI CCGC 3 cut(s) 486, 492, 963
AclWI GGATC 2 cut(s) 76, 867
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 2 cut(s) 647, 789
AfaI GTAC 2 cut(s) 357, 650
AfiI CCNNNNNNNGG 5 cut(s) 488, 491, 697, 698, 956
AgsI TTSAA 4 cut(s) 518, 528, 743, 790
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 2 cut(s) 775, 828
AluBI AGCT 6 cut(s) 91, 509, 562, 687, 784, 935
AluI AGCT 6 cut(s) 91, 509, 562, 687, 784, 935
Alw26I GTCTC 1 cut(s) 825
AlwI GGATC 2 cut(s) 76, 867
AoxI GGCC 3 cut(s) 6, 338, 678
ApeKI GCWGC 1 cut(s) 801
ApoI RAATTY 1 cut(s) 314
AseI ATTAAT 2 cut(s) 270, 333
Asp700I GAANNNNTTC 1 cut(s) 315
AspA2I CCTAGG 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 679
AsuHPI GGTGA 4 cut(s) 308, 559, 578, 929
AvrII CCTAGG 1 cut(s) 383
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 949
BbsI GAAGAC 1 cut(s) 777
BbvCI CCTCAGC 2 cut(s) 87, 683
BbvI GCAGC 1 cut(s) 813
BccI CCATC 3 cut(s) 49, 349, 529
BciT130I CCWGG 2 cut(s) 777, 830
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 825
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 6 cut(s) 75, 125, 384, 399, 510, 563
BisI GCNGC 1 cut(s) 802
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 1 cut(s) 803
Bme1390I CCNGG 2 cut(s) 777, 830
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 4 cut(s) 146, 324, 888, 948
BmrFI CCNGG 2 cut(s) 777, 830
BmsI GCATC 1 cut(s) 43
BoxI GACNNNNGTC 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 777
Bpu10I CCTNAGC 2 cut(s) 87, 683
BsaBI GATNNNNATC 1 cut(s) 837
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 3 cut(s) 224, 383, 775
Bsc4I CCNNNNNNNGG 5 cut(s) 488, 491, 697, 698, 956
Bse118I RCCGGY 2 cut(s) 370, 488
Bse1I ACTGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 837
BseBI CCWGG 2 cut(s) 777, 830
BseDI CCNNGG 3 cut(s) 224, 383, 775
BseGI GGATG 2 cut(s) 34, 377
BseJI GATNNNNATC 1 cut(s) 837
BseLI CCNNNNNNNGG 5 cut(s) 488, 491, 697, 698, 956
BseMII CTCAG 4 cut(s) 101, 459, 697, 917
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 813
BshFI GGCC 3 cut(s) 8, 340, 680
BshNI GGYRCC 1 cut(s) 322
BsiSI CCGG 4 cut(s) 9, 371, 489, 950
BslI CCNNNNNNNGG 5 cut(s) 488, 491, 697, 698, 956
BsmAI GTCTC 1 cut(s) 825
BsnI GGCC 3 cut(s) 8, 340, 680
Bso31I GGTCTC 1 cut(s) 825
Bsp1286I GDGCHC 1 cut(s) 949
Bsp143I GATC 5 cut(s) 68, 112, 178, 457, 859
BspACI CCGC 3 cut(s) 486, 492, 963
BspANI GGCC 3 cut(s) 8, 340, 680
BspCNI CTCAG 4 cut(s) 100, 460, 696, 916
BspLI GGNNCC 4 cut(s) 146, 324, 888, 948
BspPI GGATC 2 cut(s) 76, 867
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 825
BsrBI CCGCTC 1 cut(s) 963
BsrFI RCCGGY 2 cut(s) 370, 488
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 2 cut(s) 370, 488
BssECI CCNNGG 3 cut(s) 224, 383, 775
BssMI GATC 5 cut(s) 68, 112, 178, 457, 859
BssT1I CCWWGG 2 cut(s) 224, 383
Bst2UI CCWGG 2 cut(s) 777, 830
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 32, 453, 490
BstDEI CTNAG 5 cut(s) 87, 468, 683, 863, 903
BstF5I GGATG 2 cut(s) 34, 377
BstKTI GATC 5 cut(s) 71, 115, 181, 460, 862
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 5 cut(s) 68, 112, 178, 457, 859
BstMWI GCNNNNNNNGC 1 cut(s) 498
BstNI CCWGG 2 cut(s) 777, 830
BstNSI RCATGY 3 cut(s) 34, 370, 455
BstPAI GACNNNNGTC 1 cut(s) 777
BstSCI CCNGG 2 cut(s) 775, 828
BstV1I GCAGC 1 cut(s) 813
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 2 cut(s) 68, 859
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 2 cut(s) 68, 859
BsuRI GGCC 3 cut(s) 8, 340, 680
BtsCI GGATG 2 cut(s) 34, 377
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 3 cut(s) 32, 453, 490
Cfr10I RCCGGY 2 cut(s) 370, 488
Cfr13I GGNCC 1 cut(s) 679
Csp6I GTAC 2 cut(s) 356, 649
CviAII CATG 5 cut(s) 31, 308, 367, 452, 718
CviQI GTAC 2 cut(s) 356, 649
DdeI CTNAG 5 cut(s) 87, 468, 683, 863, 903
DpnI GATC 5 cut(s) 70, 114, 180, 459, 861
DpnII GATC 5 cut(s) 68, 112, 178, 457, 859
EaeI YGGCCR 1 cut(s) 6
EciI GGCGGA 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 224, 383
Eco24I GRGCYC 1 cut(s) 949
Eco31I GGTCTC 1 cut(s) 825
Eco57I CTGAAG 2 cut(s) 647, 789
EcoO109I RGGNCCY 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 775, 828
EcoT14I CCWWGG 2 cut(s) 224, 383
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 949
ErhI CCWWGG 2 cut(s) 224, 383
FaeI CATG 5 cut(s) 34, 311, 370, 455, 721
FatI CATG 5 cut(s) 30, 307, 366, 451, 717
FauI CCCGC 2 cut(s) 493, 956
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 802
FokI GGATG 2 cut(s) 21, 364
FriOI GRGCYC 1 cut(s) 949
Fsp4HI GCNGC 1 cut(s) 802
FspBI CTAG 6 cut(s) 75, 125, 384, 399, 510, 563
GluI GCNGC 1 cut(s) 802
HaeIII GGCC 3 cut(s) 8, 340, 680
HapII CCGG 4 cut(s) 9, 371, 489, 950
Hin1II CATG 5 cut(s) 34, 311, 370, 455, 721
HinfI GANTC 4 cut(s) 202, 657, 667, 833
HpaII CCGG 4 cut(s) 9, 371, 489, 950
HphI GGTGA 4 cut(s) 308, 559, 578, 929
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 6 cut(s) 201, 469, 656, 666, 906, 932
Hpy188III TCNNGA 4 cut(s) 171, 182, 787, 842
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 4 cut(s) 66, 112, 593, 671
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 5 cut(s) 34, 455, 501, 801, 900
HpyF10VI GCNNNNNNNGC 1 cut(s) 498
HpyF3I CTNAG 5 cut(s) 87, 468, 683, 863, 903
Hsp92II CATG 5 cut(s) 34, 311, 370, 455, 721
KroI GCCGGC 1 cut(s) 488
KroNI GCCGGC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 5 cut(s) 68, 112, 178, 457, 859
LmnI GCTCC 6 cut(s) 27, 144, 692, 932, 952, 960
Lsp1109I GCAGC 1 cut(s) 813
LweI GCATC 1 cut(s) 43
MaeI CTAG 6 cut(s) 75, 125, 384, 399, 510, 563
MaeIII GTNAC 3 cut(s) 296, 394, 917
MalI GATC 5 cut(s) 70, 114, 180, 459, 861
MbiI CCGCTC 1 cut(s) 963
MboI GATC 5 cut(s) 68, 112, 178, 457, 859
MboII GAAGA 6 cut(s) 43, 63, 323, 454, 516, 782
MfeI CAATTG 1 cut(s) 796
MflI RGATCY 2 cut(s) 68, 859
MhlI GDGCHC 1 cut(s) 949
MluCI AATT 7 cut(s) 97, 149, 271, 314, 672, 754, 796
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 8 cut(s) 96, 141, 296, 492, 670, 692, 714, 718
Mph1103I ATGCAT 1 cut(s) 36
MreI CGCCGGCG 1 cut(s) 488
MroNI GCCGGC 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 5 cut(s) 231, 270, 333, 404, 924
MslI CAYNNNNRTG 1 cut(s) 469
MspI CCGG 4 cut(s) 9, 371, 489, 950
MspR9I CCNGG 2 cut(s) 777, 830
MunI CAATTG 1 cut(s) 796
MvaI CCWGG 2 cut(s) 777, 830
MwoI GCNNNNNNNGC 1 cut(s) 498
NaeI GCCGGC 1 cut(s) 490
NdeII GATC 5 cut(s) 68, 112, 178, 457, 859
NgoMIV GCCGGC 1 cut(s) 488
NlaIII CATG 5 cut(s) 34, 311, 370, 455, 721
NlaIV GGNNCC 4 cut(s) 146, 324, 888, 948
NmuCI GTSAC 3 cut(s) 296, 394, 917
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 3 cut(s) 34, 370, 455
PaeI GCATGC 2 cut(s) 34, 455
PdiI GCCGGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 202, 657, 833
PkrI GCNGC 1 cut(s) 803
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
PshAI GACNNNNGTC 1 cut(s) 777
PshBI ATTAAT 2 cut(s) 270, 333
PsiI TTATAA 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 775, 828
PspGI CCWGG 2 cut(s) 775, 828
PspN4I GGNNCC 4 cut(s) 146, 324, 888, 948
PspPI GGNCC 1 cut(s) 679
PsuI RGATCY 2 cut(s) 68, 859
RsaI GTAC 2 cut(s) 357, 650
RsaNI GTAC 2 cut(s) 356, 649
RseI CAYNNNNRTG 1 cut(s) 469
SaqAI TTAA 5 cut(s) 231, 270, 333, 404, 924
SatI GCNGC 1 cut(s) 802
Sau3AI GATC 5 cut(s) 68, 112, 178, 457, 859
Sau96I GGNCC 1 cut(s) 679
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 2 cut(s) 777, 830
SduI GDGCHC 1 cut(s) 949
SfaNI GCATC 1 cut(s) 43
SgrAI CRCCGGYG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 469
SpeI ACTAGT 1 cut(s) 398
SphI GCATGC 2 cut(s) 34, 455
Sse9I AATT 7 cut(s) 97, 149, 271, 314, 672, 754, 796
SsiI CCGC 3 cut(s) 486, 492, 963
SspI AATATT 1 cut(s) 253
SspMI CTAG 6 cut(s) 75, 125, 384, 399, 510, 563
StyD4I CCNGG 2 cut(s) 775, 828
StyI CCWWGG 2 cut(s) 224, 383
TaaI ACNGT 1 cut(s) 216
TasI AATT 7 cut(s) 97, 149, 271, 314, 672, 754, 796
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 3 cut(s) 202, 657, 833
Tru1I TTAA 5 cut(s) 231, 270, 333, 404, 924
Tru9I TTAA 5 cut(s) 231, 270, 333, 404, 924
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 3 cut(s) 296, 394, 917
TseI GCWGC 1 cut(s) 801
Tsp45I GTSAC 3 cut(s) 296, 394, 917
TspDTI ATGAA 2 cut(s) 324, 366
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 625
VspI ATTAAT 2 cut(s) 270, 333
XapI RAATTY 1 cut(s) 314
XceI RCATGY 3 cut(s) 34, 370, 455
XmaJI CCTAGG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 6 cut(s) 75, 125, 384, 399, 510, 563
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.