AT2G27260

Has 584 Blast hits to 584 proteins in 25 species Archae - 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001922
Physical Location & Seq
Forward (+)
11669629 .. 11670644
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27260.1

Sequence Viewer

Length: 732 bp
ATGCAAGATCCATCACGACCCGCTACAGGTTACCCATACCCATACCCATACCCGAATCCACAACAACAACAACCACCCACCAACGGGTACCCAAACCCCGCCGCCGGAACCGCTTACCCCTACCAAAACCACAACCCATACTACGCGCCACAACCAAACCCACGCGCCGTCATAATCCGCCGTCTCTTCATCGTCTTCACAACATTCCTCCTACTCCTAGGTCTAATCCTCTTCATCTTCTTCCTAATCGTTCGTCCTCAACTACCAGACGTTAACCTAAACTCACTCTCCGTCTCCAATTTCAATGTCTCCAACAATCAAGTCTCTGGTAAATGGGATCTTCAACTCCAATTTCGAAACCCTAATTCAAAGATGTCACTTCACTACGAGACTGCTCTTTGCGCTATGTATTACAATCGTGTCTCTCTATCCGAGACTAGGTTACAACCGTTTGATCAAGGGAAGAAAGATCAAACGGTGGTTAATGCGACTCTCTCTGTTTCTGGTACTTATGTTGATGGACGTTTGGTTGATTCTATTGGTAAAGAGAGAAGTGTTAAAGGAAATGTTGAGTTTGATTTGAGGATGATTTCTTATGTTACGTTTCGATACGGTGCGTTTCGGAGGAGGAGATATGTTACTGTGTATTGTGATGATGTTGCTGTTGGTGTTCCGGTGAGTAGTGGTGAAGGGAAGATGGTTGGTTCGTCTAAGAGATGCAAAACTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

243

Amino Acids

27.58

Weight (kDa)

9.59

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 117 - 196 9.4e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 87
AccII CGCG 2 cut(s) 146, 165
AciI CCGC 5 cut(s) 21, 99, 102, 111, 178
AclWI GGATC 2 cut(s) 2, 345
AfaI GTAC 2 cut(s) 89, 508
AfiI CCNNNNNNNGG 5 cut(s) 26, 83, 84, 104, 438
AgsI TTSAA 3 cut(s) 304, 344, 369
Alw26I GTCTC 7 cut(s) 188, 298, 313, 328, 383, 427, 428
AlwI GGATC 2 cut(s) 2, 345
Asp718I GGTACC 1 cut(s) 87
AspA2I CCTAGG 1 cut(s) 217
AspLEI GCGC 3 cut(s) 148, 167, 404
AsuHPI GGTGA 2 cut(s) 688, 698
AsuII TTCGAA 1 cut(s) 355
AvrII CCTAGG 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BanI GGYRCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 187
BccI CCATC 3 cut(s) 19, 512, 691
BceAI ACGGC 2 cut(s) 152, 165
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 7 cut(s) 188, 298, 313, 328, 383, 427, 428
BfaI CTAG 2 cut(s) 218, 438
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 102
BlnI CCTAGG 1 cut(s) 217
BlsI GCNGC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 89, 109
BmsI GCATC 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 83, 84, 104, 438
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 591
BseLI CCNNNNNNNGG 5 cut(s) 26, 83, 84, 104, 438
BseRI GAGGAG 2 cut(s) 640, 643
Bsh1236I CGCG 2 cut(s) 146, 165
BshNI GGYRCC 1 cut(s) 87
BsiSI CCGG 2 cut(s) 105, 674
BslI CCNNNNNNNGG 5 cut(s) 26, 83, 84, 104, 438
BsmAI GTCTC 7 cut(s) 188, 298, 313, 328, 383, 427, 428
BsmBI CGTCTC 2 cut(s) 188, 298
Bsp119I TTCGAA 1 cut(s) 355
Bsp143I GATC 4 cut(s) 7, 337, 454, 469
BspACI CCGC 5 cut(s) 21, 99, 102, 111, 178
BspFNI CGCG 2 cut(s) 146, 165
BspLI GGNNCC 2 cut(s) 89, 109
BspPI GGATC 2 cut(s) 2, 345
BspT104I TTCGAA 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 4 cut(s) 7, 337, 454, 469
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 4 cut(s) 450, 478, 614, 643
Bst6I CTCTTC 2 cut(s) 191, 236
BstBI TTCGAA 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 711
BstEII GGTNACC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 591
BstFNI CGCG 2 cut(s) 146, 165
BstHHI GCGC 3 cut(s) 148, 167, 404
BstKTI GATC 4 cut(s) 10, 340, 457, 472
BstMAI GTCTC 7 cut(s) 188, 298, 313, 328, 383, 427, 428
BstMBI GATC 4 cut(s) 7, 337, 454, 469
BstMWI GCNNNNNNNGC 2 cut(s) 110, 401
BstPI GGTNACC 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 2 cut(s) 146, 165
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 7, 337
BstYI RGATCY 2 cut(s) 7, 337
BtsCI GGATG 1 cut(s) 591
CfoI GCGC 3 cut(s) 148, 167, 404
Csp6I GTAC 2 cut(s) 88, 507
CviQI GTAC 2 cut(s) 88, 507
DdeI CTNAG 1 cut(s) 711
DpnI GATC 4 cut(s) 9, 339, 456, 471
DpnII GATC 4 cut(s) 7, 337, 454, 469
Eam1104I CTCTTC 2 cut(s) 191, 236
EarI CTCTTC 2 cut(s) 191, 236
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 2 cut(s) 188, 298
FaiI YATR 9 cut(s) 37, 43, 49, 139, 173, 407, 513, 597, 636
FauI CCCGC 2 cut(s) 28, 106
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 598
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 2 cut(s) 218, 438
GlaI GCGC 3 cut(s) 147, 166, 403
GluI GCNGC 1 cut(s) 102
HapII CCGG 2 cut(s) 105, 674
HhaI GCGC 3 cut(s) 148, 167, 404
Hin6I GCGC 3 cut(s) 146, 165, 402
HinP1I GCGC 3 cut(s) 146, 165, 402
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 55, 490, 533
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 2 cut(s) 105, 674
HphI GGTGA 2 cut(s) 688, 698
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 433, 624
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 683
HpyCH4III ACNGT 4 cut(s) 450, 478, 614, 643
HpyCH4IV ACGT 3 cut(s) 270, 523, 602
HpyCH4V TGCA 2 cut(s) 4, 720
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 401
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 3 cut(s) 270, 523, 602
HspAI GCGC 3 cut(s) 146, 165, 402
KpnI GGTACC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 454
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 4 cut(s) 7, 337, 454, 469
LpnPI CCDG 6 cut(s) 12, 118, 279, 312, 489, 687
LweI GCATC 1 cut(s) 707
MaeI CTAG 2 cut(s) 218, 438
MaeII ACGT 3 cut(s) 270, 523, 602
MaeIII GTNAC 5 cut(s) 29, 375, 441, 598, 637
MalI GATC 4 cut(s) 9, 339, 456, 471
MboI GATC 4 cut(s) 7, 337, 454, 469
MboII GAAGA 8 cut(s) 178, 187, 223, 229, 232, 332, 475, 706
MflI RGATCY 2 cut(s) 7, 337
MluCI AATT 3 cut(s) 298, 350, 364
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 6 cut(s) 218, 239, 267, 576, 618, 621
MseI TTAA 3 cut(s) 273, 483, 558
MspI CCGG 2 cut(s) 105, 674
MvnI CGCG 2 cut(s) 146, 165
MwoI GCNNNNNNNGC 2 cut(s) 110, 401
NdeII GATC 4 cut(s) 7, 337, 454, 469
NlaIV GGNNCC 2 cut(s) 89, 109
NmuCI GTSAC 1 cut(s) 375
NspV TTCGAA 1 cut(s) 355
PfeI GAWTC 2 cut(s) 55, 533
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PspEI GGTNACC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 89, 109
PsuI RGATCY 2 cut(s) 7, 337
RsaI GTAC 2 cut(s) 89, 508
RsaNI GTAC 2 cut(s) 88, 507
SaqAI TTAA 3 cut(s) 273, 483, 558
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 4 cut(s) 7, 337, 454, 469
SchI GAGTC 1 cut(s) 484
SetI ASST 7 cut(s) 31, 223, 273, 279, 443, 526, 605
SfaNI GCATC 1 cut(s) 707
SfcI CTRYAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 355
Sse9I AATT 3 cut(s) 298, 350, 364
SsiI CCGC 5 cut(s) 21, 99, 102, 111, 178
SspMI CTAG 2 cut(s) 218, 438
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 4 cut(s) 450, 478, 614, 643
TaiI ACGT 3 cut(s) 273, 526, 605
TaqI TCGA 2 cut(s) 355, 607
TasI AATT 3 cut(s) 298, 350, 364
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 55, 533
Tru1I TTAA 3 cut(s) 273, 483, 558
Tru9I TTAA 3 cut(s) 273, 483, 558
TseFI GTSAC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 2 cut(s) 178, 223
TspGWI ACGGA 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 217
XspI CTAG 2 cut(s) 218, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.