Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

21390989 .. 21391372

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG231000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTACTACGACATCGTCCTTGCATTGGTCCTCTACCAGTACGGTAACACCGTTATCAGGGTAGGGCCAATGCCGCGTTTGCATCCCTTGATTCCCTTCTCCTTGAAAGAGAGGAACCACACACGTGTCCATTTCAAGCTAGGAGTGGTGAGGGAGTGGTTCGGCGATGGAGTGGCACAACAAATCTCCTACGACAGGTCTCGCGGATTGGTGAGATTTGGGGTTAGAATGGCCGCTGCGGTGAGGTTCAAGGCTAGGCTACGGCCTTCGAAACACTATGTACTGCTGGTCTCCTACGATCGGGTCTATTTCGGGTTTTCTAGGAATAATGAGACCAGCGTATTGATGGGTCAATCTAGAGCGTGCTCTGTTGAATTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

127

Amino Acids

14.8

Weight (kDa)

10.57

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	76, 204
AciI	CCGC	4 cut(s)	74, 204, 234, 239
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	374
AcvI	CACGTG	1 cut(s)	125
AfaI	GTAC	3 cut(s)	5, 41, 282
AfiI	CCNNNNNNNGG	4 cut(s)	25, 57, 195, 300
AflIII	ACRYGT	2 cut(s)	122, 124
AgsI	TTSAA	4 cut(s)	106, 136, 250, 374
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	3 cut(s)	204, 295, 326
AoxI	GGCC	3 cut(s)	65, 231, 263
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	28, 65
AsuHPI	GGTGA	3 cut(s)	160, 223, 253
AsuII	TTCGAA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	28
BbrPI	CACGTG	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	161, 340
BceAI	ACGGC	1 cut(s)	278
BcoDI	GTCTC	3 cut(s)	204, 295, 326
BfaI	CTAG	4 cut(s)	140, 255, 321, 357
BisI	GCNGC	3 cut(s)	74, 234, 237
BlsI	GCNGC	3 cut(s)	75, 235, 238
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	28, 65
BmiI	GGNNCC	1 cut(s)	116
BmsI	GCATC	1 cut(s)	91
Bpu14I	TTCGAA	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	125
BsaI	GGTCTC	3 cut(s)	204, 295, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 57, 195, 300
Bse1I	ACTGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	4 cut(s)	25, 57, 195, 300
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	76, 204
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	3 cut(s)	67, 233, 265
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	368
BslI	CCNNNNNNNGG	4 cut(s)	25, 57, 195, 300
BsmAI	GTCTC	3 cut(s)	204, 295, 326
BsnI	GGCC	3 cut(s)	67, 233, 265
Bso31I	GGTCTC	3 cut(s)	204, 295, 326
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	4 cut(s)	74, 204, 234, 239
BspANI	GGCC	3 cut(s)	67, 233, 265
BspFNI	CGCG	2 cut(s)	76, 204
BspLI	GGNNCC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	269
BspTNI	GGTCTC	3 cut(s)	204, 295, 326
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	44, 52
BstBAI	YACGTR	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	2 cut(s)	76, 204
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	3 cut(s)	204, 295, 326
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 79
BstUI	CGCG	2 cut(s)	76, 204
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	67, 233, 265
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	28, 65
Csp6I	GTAC	3 cut(s)	4, 40, 281
CviJI	RGCY	6 cut(s)	67, 139, 233, 254, 259, 265
CviKI_1	RGCY	6 cut(s)	67, 139, 233, 254, 259, 265
CviQI	GTAC	3 cut(s)	4, 40, 281
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	231
Eco31I	GGTCTC	3 cut(s)	204, 295, 326
Eco47I	GGWCC	1 cut(s)	28
Eco72I	CACGTG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	193
FaiI	YATR	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	74, 234, 237
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	74, 234, 237
FspBI	CTAG	4 cut(s)	140, 255, 321, 357
GluI	GCNGC	3 cut(s)	74, 234, 237
HaeIII	GGCC	3 cut(s)	67, 233, 265
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	3 cut(s)	160, 223, 253
Hpy188III	TCNNGA	1 cut(s)	357
HpyAV	CCTTC	2 cut(s)	106, 276
HpyCH4III	ACNGT	2 cut(s)	44, 52
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	23, 82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 79
HpySE526I	ACGT	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	5 cut(s)	43, 50, 181, 272, 349
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	4 cut(s)	140, 255, 321, 357
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	1 cut(s)	374
MnlI	CCTC	4 cut(s)	41, 105, 144, 237
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	76, 204
MwoI	GCNNNNNNNGC	2 cut(s)	73, 79
NdeII	GATC	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	269
OliI	CACNNNNGTG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	75, 235, 238
Ple19I	CGATCG	1 cut(s)	301
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	125
PspCI	CACGTG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	28, 65
PsyI	GACNNNGTC	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	301
RsaI	GTAC	3 cut(s)	5, 41, 282
RsaNI	GTAC	3 cut(s)	4, 40, 281
RseI	CAYNNNNRTG	1 cut(s)	123
SatI	GCNGC	3 cut(s)	74, 234, 237
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	28, 65
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	5 cut(s)	127, 141, 200, 248, 383
SfaNI	GCATC	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	269
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	4 cut(s)	74, 204, 234, 239
SspMI	CTAG	4 cut(s)	140, 255, 321, 357
TaaI	ACNGT	2 cut(s)	44, 52
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	374
TatI	WGTACW	2 cut(s)	3, 280
TauI	GCSGC	2 cut(s)	76, 236
TfiI	GAWTC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	236
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	374
XbaI	TCTAGA	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	4 cut(s)	140, 255, 321, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.