Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

21369923 .. 21370435

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGAGTCCAGAACTTCCCGAGTTCAAGATCGAATCAGCCACCATCTCCCAACTCGATACGGAAGGCTCCTTGACCGCCGCGTGGGACATCACTTTCCTCGCCAGTAACCCTAACTGCAAATACAAAATGTACTACGACATCGTCCTTGCATCGGTCCTCTACCAGTACGGTAACACTGTTATCAGGGTAGGGCCAACGCCGTGTTTGCATCCCTTGATTCCCTTCTCCTTGAAAGAGGGGAACCACACACGTGTCCATTTCAAGCTAGGAGTGGTGAGGGAGTGGTTAGGCAATGGAGTGGCACAACAAATCTCCTACGACAGGTCTTGCAGATTGGTGAGATTTGGGGTTAGAATGGCCGTTGCGGTGAGGTTCAAGGCTAGGCTACGGCCTTCGGAACACTATGTACTGCTGGTCTCCTGCGATCGGGTCGATTTCGGGTTTTCTAGGAATAATGAGACCGGCATATTGACGGGTCAATCTAGAGCGTGCTCTGTTGAATCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

170

Amino Acids

19.18

Weight (kDa)

8.87

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	83
AciI	CCGC	3 cut(s)	78, 81, 368
AcoI	YGGCCR	1 cut(s)	360
AcvI	CACGTG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	134, 170, 411
AfiI	CCNNNNNNNGG	4 cut(s)	84, 154, 324, 429
AflIII	ACRYGT	2 cut(s)	251, 253
AgsI	TTSAA	5 cut(s)	28, 235, 265, 379, 503
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	424, 455
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	3 cut(s)	194, 360, 392
AspS9I	GGNCC	2 cut(s)	157, 194
AsuHPI	GGTGA	3 cut(s)	289, 352, 382
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	157
BbrPI	CACGTG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	497
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	3 cut(s)	187, 347, 407
BcoDI	GTCTC	2 cut(s)	424, 455
BfaI	CTAG	5 cut(s)	269, 384, 450, 486, 507
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	2 cut(s)	157, 194
BmiI	GGNNCC	2 cut(s)	70, 245
BmsI	GCATC	2 cut(s)	161, 220
BsaAI	YACGTR	1 cut(s)	254
BsaI	GGTCTC	2 cut(s)	424, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 154, 324, 429
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	105, 166
Bse3DI	GCAATG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	4 cut(s)	84, 154, 324, 429
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	105, 166
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	3 cut(s)	196, 362, 394
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	497
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	4 cut(s)	84, 154, 324, 429
BsmAI	GTCTC	2 cut(s)	424, 455
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	196, 362, 394
Bso31I	GGTCTC	2 cut(s)	424, 455
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	30, 427
BspACI	CCGC	3 cut(s)	78, 81, 368
BspANI	GGCC	3 cut(s)	196, 362, 394
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	70, 245
BspTNI	GGTCTC	2 cut(s)	424, 455
BsrDI	GCAATG	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	105, 166
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	2 cut(s)	30, 427
Bst4CI	ACNGT	2 cut(s)	173, 181
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	33, 430
BstMAI	GTCTC	2 cut(s)	424, 455
BstMBI	GATC	2 cut(s)	30, 427
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	196, 362, 394
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	157, 194
Csp6I	GTAC	3 cut(s)	133, 169, 410
CviJI	RGCY	8 cut(s)	41, 69, 196, 268, 362, 383, 388, 394
CviKI_1	RGCY	8 cut(s)	41, 69, 196, 268, 362, 383, 388, 394
CviQI	GTAC	3 cut(s)	133, 169, 410
DpnI	GATC	2 cut(s)	32, 429
DpnII	GATC	2 cut(s)	30, 427
EaeI	YGGCCR	1 cut(s)	360
Eco31I	GGTCTC	2 cut(s)	424, 455
Eco47I	GGWCC	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	322
FaiI	YATR	2 cut(s)	408, 470
FaqI	GGGAC	1 cut(s)	101
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	5 cut(s)	269, 384, 450, 486, 507
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	196, 362, 394
HapII	CCGG	1 cut(s)	465
HinfI	GANTC	4 cut(s)	7, 35, 220, 503
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	3 cut(s)	289, 352, 382
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	4 cut(s)	11, 20, 28, 486
HpyAV	CCTTC	3 cut(s)	59, 235, 405
HpyCH4III	ACNGT	2 cut(s)	173, 181
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	120, 152, 211, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	30, 427
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	8 cut(s)	24, 118, 172, 179, 310, 401, 436, 478
LweI	GCATC	2 cut(s)	161, 220
MaeI	CTAG	5 cut(s)	269, 384, 450, 486, 507
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	107, 173
MalI	GATC	2 cut(s)	32, 429
MboI	GATC	2 cut(s)	30, 427
MhlI	GDGCHC	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	110, 170, 232, 273, 366
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	208
NdeII	GATC	2 cut(s)	30, 427
NlaIV	GGNNCC	2 cut(s)	70, 245
OliI	CACNNNNGTG	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	35, 220, 503
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	82
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	1 cut(s)	15
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	254
PspCI	CACGTG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	70, 245
PspPI	GGNCC	2 cut(s)	157, 194
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PsyI	GACNNNGTC	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	430
RsaI	GTAC	3 cut(s)	134, 170, 411
RsaNI	GTAC	3 cut(s)	133, 169, 410
RseI	CAYNNNNRTG	1 cut(s)	252
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	30, 427
Sau96I	GGNCC	2 cut(s)	157, 194
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	5 cut(s)	256, 270, 329, 377, 512
SfaNI	GCATC	2 cut(s)	161, 220
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	252
SsiI	CCGC	3 cut(s)	78, 81, 368
SspMI	CTAG	5 cut(s)	269, 384, 450, 486, 507
TaaI	ACNGT	2 cut(s)	173, 181
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	33, 57, 435
TaqII	GACCGA	1 cut(s)	145
TatI	WGTACW	2 cut(s)	132, 409
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	35, 220, 503
TscAI	CASTG	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	485
XspI	CTAG	5 cut(s)	269, 384, 450, 486, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.