Rh5CG352400

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001922
Physical Location & Seq
Reverse (-)
40808633 .. 40809771
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG352400.1

Sequence Viewer

Length: 723 bp
ATGGCAGACCCTTCTCGGCCCGTCACCGGCTACCCAGCCCCGCCCTACGCCCAGCCCTACCCCGCCAACAACGGCCAGCCCAACGGCTCCTACCCCAACTACCCAGTCTACCAGCGCGGCGGCCCCTACAACGCGTACACCGCACGCTCCGCCTTCCTCCGCCGCTTCGTCATCGCCATGGTCTTCCTCTTCGTCATCATCGGCTCCCTCCTCCTCATGATCTGGCTCATCCTCCGCCCCAAGATCCCCGACTTCCGAGTCGACTCCTTCACCGTCACCAACCTCAACGTCTCCTCCTCCCGCCAGTCCCTCACCGGCACCTGGTCCGTCGGCTTCGACGTCTTCAACCCCAACAAGAAGATGACCATCGAGTACGACGAGATCGGCTCCTCCGTCTTCTACCGCTCCGGCTTCATTTCCGAGACCCAAATCCCGCCGTTCCGGCAGGGGAAGAGAGTCCGGAGCGCCGTGAACGCGACCTTCTCCGCGGCGAACTCGTTCGTCGGCGACAGGGTGGCGAGTGGGATCGACGCGGACAGGGCGGCGCATGGGGCGGTGAGTTTCAATATCAAGCTGCTGGCTAGGGTTCAGTTTCGGAAGGGCGGGTGGAGGCTGAGGCGGCGGCTGCTGAGGGTGCTGTGCCGTGACGTGCCGGTTACGATTTCGAATAATGGGACCGGGACGATGACCGGTGGAGGTAGAGATTGCGGCGTTGCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

240

Amino Acids

26.47

Weight (kDa)

10.52

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AatII GACGTC 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 317
AccBSI CCGCTC 1 cut(s) 405
AccI GTMKAC 2 cut(s) 108, 261
AccII CGCG 5 cut(s) 117, 134, 476, 488, 533
AccIII TCCGGA 1 cut(s) 459
AclWI GGATC 2 cut(s) 238, 533
AcoI YGGCCR 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 137, 374
AfiI CCNNNNNNNGG 2 cut(s) 26, 321
AflIII ACRYGT 1 cut(s) 132
AgeI ACCGGT 1 cut(s) 689
AgsI TTSAA 2 cut(s) 346, 565
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 295, 416
AlwI GGATC 2 cut(s) 238, 533
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 3 cut(s) 17, 73, 121
ApeKI GCWGC 2 cut(s) 574, 625
AsiGI ACCGGT 1 cut(s) 689
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 3 cut(s) 117, 467, 547
AspS9I GGNCC 4 cut(s) 18, 122, 324, 675
AsuC2I CCSGG 1 cut(s) 679
AsuHPI GGTGA 5 cut(s) 16, 262, 268, 304, 568
AsuII TTCGAA 1 cut(s) 665
AvaII GGWCC 2 cut(s) 324, 675
BanI GGYRCC 1 cut(s) 317
BbsI GAAGAC 3 cut(s) 175, 334, 388
BbvCI CCTCAGC 2 cut(s) 614, 629
BbvI GCAGC 2 cut(s) 561, 612
BccI CCATC 1 cut(s) 374
BceAI ACGGC 5 cut(s) 88, 100, 421, 452, 627
BciT130I CCWGG 1 cut(s) 322
BcnI CCSGG 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 295, 416
BfaI CTAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 468
BglI GCCNNNNNGGC 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 322, 679
Bme18I GGWCC 2 cut(s) 324, 675
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 4 cut(s) 18, 122, 324, 675
BmiI GGNNCC 6 cut(s) 88, 124, 205, 319, 388, 676
BmrFI CCNGG 2 cut(s) 322, 679
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 3 cut(s) 175, 334, 388
BplI GAGNNNNNCTC 2 cut(s) 371, 403
Bpu10I CCTNAGC 2 cut(s) 614, 629
Bpu14I TTCGAA 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 679
BsaBI GATNNNNATC 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 177, 486
BsaWI WCCGGW 2 cut(s) 459, 689
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 321
Bse118I RCCGGY 4 cut(s) 26, 314, 652, 689
Bse1I ACTGG 2 cut(s) 104, 304
Bse8I GATNNNNATC 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 459
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 177, 486
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 2 cut(s) 26, 321
BseMII CTCAG 2 cut(s) 605, 620
BseNI ACTGG 2 cut(s) 104, 304
BseRI GAGGAG 5 cut(s) 200, 203, 283, 286, 379
BseXI GCAGC 2 cut(s) 561, 612
BseYI CCCAGC 2 cut(s) 34, 51
Bsh1236I CGCG 5 cut(s) 117, 134, 476, 488, 533
BshFI GGCC 3 cut(s) 19, 75, 123
BshNI GGYRCC 1 cut(s) 317
BshTI ACCGGT 1 cut(s) 689
BsiSI CCGG 8 cut(s) 27, 315, 408, 442, 460, 653, 678, 690
BslFI GGGAC 3 cut(s) 292, 688, 694
BslI CCNNNNNNNGG 2 cut(s) 26, 321
BsmAI GTCTC 2 cut(s) 295, 416
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 3 cut(s) 292, 688, 694
BsnI GGCC 3 cut(s) 19, 75, 123
Bso31I GGTCTC 1 cut(s) 416
Bsp119I TTCGAA 1 cut(s) 665
Bsp13I TCCGGA 1 cut(s) 459
Bsp143I GATC 4 cut(s) 219, 243, 381, 525
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 3 cut(s) 19, 75, 123
BspCNI CTCAG 2 cut(s) 606, 621
BspEI TCCGGA 1 cut(s) 459
BspFNI CGCG 5 cut(s) 117, 134, 476, 488, 533
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 6 cut(s) 88, 124, 205, 319, 388, 676
BspPI GGATC 2 cut(s) 238, 533
BspT104I TTCGAA 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 405
BsrFI RCCGGY 4 cut(s) 26, 314, 652, 689
BsrI ACTGG 2 cut(s) 104, 304
BssAI RCCGGY 4 cut(s) 26, 314, 652, 689
BssECI CCNNGG 2 cut(s) 177, 486
BssMI GATC 4 cut(s) 219, 243, 381, 525
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 2 cut(s) 194, 446
BstACI GRCGYC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 665
BstC8I GCNNGC 3 cut(s) 77, 145, 579
BstDEI CTNAG 2 cut(s) 614, 629
BstDSI CCRYGG 2 cut(s) 177, 486
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 5 cut(s) 117, 134, 476, 488, 533
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 3 cut(s) 117, 467, 547
BstKTI GATC 4 cut(s) 222, 246, 384, 528
BstMAI GTCTC 2 cut(s) 295, 416
BstMBI GATC 4 cut(s) 219, 243, 381, 525
BstMWI GCNNNNNNNGC 9 cut(s) 140, 149, 442, 473, 539, 551, 619, 625, 634
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 320, 677
BstUI CGCG 5 cut(s) 117, 134, 476, 488, 533
BstV1I GCAGC 2 cut(s) 561, 612
BstV2I GAAGAC 3 cut(s) 175, 334, 388
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 3 cut(s) 19, 75, 123
BtgI CCRYGG 2 cut(s) 177, 486
BtgZI GCGATG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 3 cut(s) 77, 145, 579
CciI TCATGA 1 cut(s) 216
CfoI GCGC 3 cut(s) 117, 467, 547
Cfr10I RCCGGY 4 cut(s) 26, 314, 652, 689
Cfr13I GGNCC 4 cut(s) 18, 122, 324, 675
Cfr42I CCGCGG 1 cut(s) 489
CseI GACGC 1 cut(s) 539
CsiI ACCWGGT 1 cut(s) 320
Csp6I GTAC 2 cut(s) 136, 373
CspAI ACCGGT 1 cut(s) 689
CviAII CATG 3 cut(s) 178, 217, 548
CviQI GTAC 2 cut(s) 136, 373
DdeI CTNAG 2 cut(s) 614, 629
DpnI GATC 4 cut(s) 221, 245, 383, 527
DpnII GATC 4 cut(s) 219, 243, 381, 525
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 194, 446
EarI CTCTTC 2 cut(s) 194, 446
EciI GGCGGA 3 cut(s) 139, 149, 224
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 2 cut(s) 324, 675
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 3 cut(s) 181, 220, 551
FaiI YATR 3 cut(s) 179, 218, 549
FaqI GGGAC 3 cut(s) 292, 688, 694
FatI CATG 3 cut(s) 177, 216, 547
FauI CCCGC 5 cut(s) 48, 70, 308, 441, 596
FblI GTMKAC 2 cut(s) 108, 261
FokI GGATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 582
GlaI GCGC 3 cut(s) 116, 466, 546
GsaI CCCAGC 2 cut(s) 38, 55
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 3 cut(s) 19, 75, 123
HapII CCGG 8 cut(s) 27, 315, 408, 442, 460, 653, 678, 690
HgaI GACGC 1 cut(s) 539
HhaI GCGC 3 cut(s) 117, 467, 547
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 3 cut(s) 181, 220, 551
Hin6I GCGC 3 cut(s) 115, 465, 545
HinP1I GCGC 3 cut(s) 115, 465, 545
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 258, 263, 456
HpaII CCGG 8 cut(s) 27, 315, 408, 442, 460, 653, 678, 690
HphI GGTGA 5 cut(s) 16, 262, 268, 304, 568
Hpy166II GTNNAC 4 cut(s) 109, 138, 262, 472
Hpy188I TCNGA 4 cut(s) 257, 421, 597, 722
Hpy188III TCNNGA 2 cut(s) 217, 460
Hpy8I GTNNAC 4 cut(s) 109, 138, 262, 472
Hpy99I CGWCG 5 cut(s) 332, 341, 380, 506, 533
HpyAV CCTTC 5 cut(s) 21, 163, 277, 490, 592
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 3 cut(s) 288, 339, 648
HpyF10VI GCNNNNNNNGC 9 cut(s) 140, 149, 442, 473, 539, 551, 619, 625, 634
HpyF3I CTNAG 2 cut(s) 614, 629
HpySE526I ACGT 3 cut(s) 288, 339, 648
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 3 cut(s) 181, 220, 551
HspAI GCGC 3 cut(s) 115, 465, 545
Kpn2I TCCGGA 1 cut(s) 459
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 4 cut(s) 219, 243, 381, 525
LmnI GCTCC 6 cut(s) 92, 152, 209, 392, 410, 462
Lsp1109I GCAGC 2 cut(s) 561, 612
MabI ACCWGGT 1 cut(s) 320
MaeI CTAG 1 cut(s) 582
MaeII ACGT 3 cut(s) 288, 339, 648
MaeIII GTNAC 4 cut(s) 22, 274, 644, 655
MalI GATC 4 cut(s) 221, 245, 383, 527
MbiI CCGCTC 1 cut(s) 405
MboI GATC 4 cut(s) 219, 243, 381, 525
MboII GAAGA 6 cut(s) 175, 181, 334, 370, 388, 463
MflI RGATCY 1 cut(s) 243
MluI ACGCGT 1 cut(s) 132
MlyI GAGTC 3 cut(s) 257, 267, 465
MroI TCCGGA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 497
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 8 cut(s) 27, 315, 408, 442, 460, 653, 678, 690
MspR9I CCNGG 2 cut(s) 322, 679
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 5 cut(s) 117, 134, 476, 488, 533
MwoI GCNNNNNNNGC 9 cut(s) 140, 149, 442, 473, 539, 551, 619, 625, 634
NciI CCSGG 1 cut(s) 679
NcoI CCATGG 1 cut(s) 177
NdeII GATC 4 cut(s) 219, 243, 381, 525
NlaIII CATG 3 cut(s) 181, 220, 551
NlaIV GGNNCC 6 cut(s) 88, 124, 205, 319, 388, 676
NmuCI GTSAC 3 cut(s) 22, 274, 644
NspV TTCGAA 1 cut(s) 665
PagI TCATGA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 3 cut(s) 336, 375, 390
PdmI GAANNNNTTC 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 689
PleI GAGTC 3 cut(s) 257, 266, 464
PpsI GAGTC 3 cut(s) 257, 266, 464
Psp6I CCWGG 1 cut(s) 320
PspFI CCCAGC 2 cut(s) 34, 51
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 6 cut(s) 88, 124, 205, 319, 388, 676
PspPI GGNCC 4 cut(s) 18, 122, 324, 675
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 2 cut(s) 137, 374
RsaNI GTAC 2 cut(s) 136, 373
RseI CAYNNNNRTG 1 cut(s) 176
SacII CCGCGG 1 cut(s) 489
SalI GTCGAC 1 cut(s) 260
Sau3AI GATC 4 cut(s) 219, 243, 381, 525
Sau96I GGNCC 4 cut(s) 18, 122, 324, 675
SchI GAGTC 3 cut(s) 257, 267, 465
ScrFI CCNGG 2 cut(s) 322, 679
SetI ASST 8 cut(s) 285, 291, 323, 342, 482, 576, 651, 700
SexAI ACCWGGT 1 cut(s) 320
Sfr303I CCGCGG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 665
SgrBI CCGCGG 1 cut(s) 489
SinI GGWCC 2 cut(s) 324, 675
SmiMI CAYNNNNRTG 1 cut(s) 176
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 320, 677
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 3 cut(s) 291, 342, 651
TaqI TCGA 5 cut(s) 261, 336, 369, 528, 665
TauI GCSGC 8 cut(s) 120, 123, 165, 491, 545, 622, 625, 711
TseFI GTSAC 3 cut(s) 22, 274, 644
TseI GCWGC 2 cut(s) 574, 625
Tsp45I GTSAC 3 cut(s) 22, 274, 644
TspDTI ATGAA 1 cut(s) 403
TspGWI ACGGA 2 cut(s) 316, 382
VpaK11BI GGWCC 2 cut(s) 324, 675
XmiI GTMKAC 2 cut(s) 108, 261
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 1 cut(s) 582
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.