Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

13806066 .. 13806783

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20177.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTAGTACCCAAGACGACAAGACAGTGACTGGCTATCCGGTTCAGCCGGGTCAAATCACCACCGGCTATCCCTTCCCACTACCACCGGAGTACCCCCCAGCGCCCTTCCTGATCTTAATAGCCTTCGTCGATTGGCTGGTGATGCACCCCAAACTCCCGGAGTTCAAAGTAGAATCAGCCACCGTGCCCCAACTCGACCTGAGTCGCTCCGAGTTAACGGCCACGTGGGATATCAGCATTCTCGCCATAAACCCCAGCCAGAAATTCAGAATCCACTACGACCACGTCGATGCCTCGATCGTCTACGGTGACCGTAACTACATCAGGGTCGGGAGAACGTCGTTGCGGCCCTTCGTTGTGAACACTAGGAACCAGACCCGTGTTGACATGAAACTCGTAGCGGTGAGTGAGTGGGTCGGCGATGACGTGGCGAATGAAATCTCCGACGAGAGGTCTCGGGGATTGGTGAGTTTTGGAGTCAGGTTGATGACTTCGGTGAGGTTTAAGTGTGGGCTGTGGCTGTCGAAATCTCGGTTGATGCTGATCACCTGCGATCGGGTCGATTTCGGGTTTTCTCCGAATAATGGGATCGGCACGTTGACGGGTCAGTGGAGGGAGTGCCGGGTTAACTTGAATTCATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

217

Amino Acids

24.43

Weight (kDa)

7.72

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	2 cut(s)	349, 404
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	266, 637
AcvI	CACGTG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	10, 95
AfiI	CCNNNNNNNGG	3 cut(s)	453, 558, 587
AgsI	TTSAA	2 cut(s)	169, 637
AhdI	GACNNNNNGTC	1 cut(s)	454
AjiI	CACGTC	2 cut(s)	289, 430
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	599
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	2 cut(s)	222, 350
ApoI	RAATTY	2 cut(s)	266, 637
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	3 cut(s)	51, 161, 626
AsuHPI	GGTGA	7 cut(s)	52, 154, 323, 418, 481, 511, 541
AvaI	CYCGRG	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	192
BaeI	ACNNNNGTAYC	2 cut(s)	77, 110
BbrPI	CACGTG	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	3 cut(s)	51, 161, 626
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	2 cut(s)	6, 369
BfoI	RGCGCY	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	560
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	3 cut(s)	51, 161, 626
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	459
BmgBI	CACGTC	2 cut(s)	289, 430
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	3 cut(s)	51, 161, 626
BmsI	GCATC	3 cut(s)	135, 283, 531
BoxI	GACNNNNGTC	1 cut(s)	204
BpuMI	CCSGG	3 cut(s)	51, 161, 626
BsaAI	YACGTR	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	545
BsaI	GGTCTC	1 cut(s)	462
BsaWI	WCCGGW	2 cut(s)	40, 88
Bsc4I	CCNNNNNNNGG	3 cut(s)	453, 558, 587
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	545
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	3 cut(s)	453, 558, 587
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	192
BseYI	CCCAGC	2 cut(s)	100, 257
Bsh1285I	CGRYCG	2 cut(s)	303, 559
BshFI	GGCC	2 cut(s)	224, 352
BsiEI	CGRYCG	2 cut(s)	303, 559
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	6 cut(s)	41, 50, 66, 89, 161, 625
BslI	CCNNNNNNNGG	3 cut(s)	453, 558, 587
BsmAI	GTCTC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	224, 352
Bso31I	GGTCTC	1 cut(s)	462
BsoBI	CYCGRG	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	114, 300, 546, 556, 591
BspACI	CCGC	2 cut(s)	349, 404
BspANI	GGCC	2 cut(s)	224, 352
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	374
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	5 cut(s)	114, 300, 546, 556, 591
Bst4CI	ACNGT	4 cut(s)	28, 187, 311, 317
BstBAI	YACGTR	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	311
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	5 cut(s)	117, 303, 549, 559, 594
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	5 cut(s)	114, 300, 546, 556, 591
BstMCI	CGRYCG	2 cut(s)	303, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstPAI	GACNNNNGTC	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	3 cut(s)	49, 159, 624
BstSLI	GKGCMC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	224, 352
BtgZI	GCGATG	1 cut(s)	438
BtrI	CACGTC	2 cut(s)	289, 430
BtsIMutI	CAGTG	2 cut(s)	33, 617
BveI	ACCTGC	1 cut(s)	560
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	9, 94
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	2 cut(s)	9, 94
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	5 cut(s)	116, 302, 548, 558, 593
DpnII	GATC	5 cut(s)	114, 300, 546, 556, 591
DriI	GACNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	235
Eco72I	CACGTG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	459
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	235
FaeI	CATG	1 cut(s)	394
FaiI	YATR	2 cut(s)	251, 392
FatI	CATG	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	6, 369
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	350
GsaI	CCCAGC	2 cut(s)	104, 261
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	224, 352
HapII	CCGG	6 cut(s)	41, 50, 66, 89, 161, 625
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	4 cut(s)	219, 388, 603, 631
HindII	GTYRAC	4 cut(s)	219, 388, 603, 631
HinfI	GANTC	4 cut(s)	176, 205, 273, 480
HpaI	GTTAAC	2 cut(s)	219, 631
HpaII	CCGG	6 cut(s)	41, 50, 66, 89, 161, 625
HphI	GGTGA	7 cut(s)	52, 154, 323, 418, 481, 511, 541
Hpy166II	GTNNAC	6 cut(s)	219, 307, 364, 388, 603, 631
Hpy188I	TCNGA	4 cut(s)	214, 272, 448, 582
Hpy188III	TCNNGA	2 cut(s)	112, 334
Hpy8I	GTNNAC	6 cut(s)	219, 307, 364, 388, 603, 631
Hpy99I	CGWCG	4 cut(s)	134, 293, 346, 452
HpyAV	CCTTC	4 cut(s)	85, 118, 136, 364
HpyCH4III	ACNGT	4 cut(s)	28, 187, 311, 317
HpyCH4IV	ACGT	5 cut(s)	227, 288, 341, 429, 599
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	5 cut(s)	227, 288, 341, 429, 599
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	546
KspAI	GTTAAC	2 cut(s)	219, 631
Kzo9I	GATC	5 cut(s)	114, 300, 546, 556, 591
LmnI	GCTCC	1 cut(s)	215
LweI	GCATC	3 cut(s)	135, 283, 531
MaeI	CTAG	2 cut(s)	6, 369
MaeII	ACGT	5 cut(s)	227, 288, 341, 429, 599
MaeIII	GTNAC	3 cut(s)	28, 311, 317
MalI	GATC	5 cut(s)	116, 302, 548, 558, 593
MboI	GATC	5 cut(s)	114, 300, 546, 556, 591
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	266, 637
MlyI	GAGTC	2 cut(s)	214, 489
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	4 cut(s)	307, 447, 495, 609
MseI	TTAA	4 cut(s)	119, 218, 507, 630
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	6 cut(s)	41, 50, 66, 89, 161, 625
MspR9I	CCNGG	3 cut(s)	51, 161, 626
Mva1269I	GAATGC	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	3 cut(s)	51, 161, 626
NdeII	GATC	5 cut(s)	114, 300, 546, 556, 591
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	2 cut(s)	28, 311
PaqCI	CACCTGC	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 426
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	176, 273
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	351
Ple19I	CGATCG	2 cut(s)	303, 559
PleI	GAGTC	2 cut(s)	213, 488
PmaCI	CACGTG	1 cut(s)	228
PmlI	CACGTG	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	213, 488
Ppu21I	YACGTR	1 cut(s)	228
PshAI	GACNNNNGTC	1 cut(s)	204
PspCI	CACGTG	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	311
PspFI	CCCAGC	2 cut(s)	100, 257
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	287
PvuI	CGATCG	2 cut(s)	303, 559
RsaI	GTAC	2 cut(s)	10, 95
RsaNI	GTAC	2 cut(s)	9, 94
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	4 cut(s)	119, 218, 507, 630
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	5 cut(s)	114, 300, 546, 556, 591
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	2 cut(s)	214, 489
ScrFI	CCNGG	3 cut(s)	51, 161, 626
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	3 cut(s)	135, 283, 531
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	266, 637
SsiI	CCGC	2 cut(s)	349, 404
SspMI	CTAG	2 cut(s)	6, 369
StyD4I	CCNGG	3 cut(s)	49, 159, 624
TaaI	ACNGT	4 cut(s)	28, 187, 311, 317
TaiI	ACGT	5 cut(s)	230, 291, 344, 432, 602
TaqI	TCGA	6 cut(s)	132, 198, 291, 299, 527, 564
TasI	AATT	2 cut(s)	266, 637
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	176, 273
Tru1I	TTAA	4 cut(s)	119, 218, 507, 630
Tru9I	TTAA	4 cut(s)	119, 218, 507, 630
TscAI	CASTG	2 cut(s)	33, 617
TseFI	GTSAC	2 cut(s)	28, 311
Tsp45I	GTSAC	2 cut(s)	28, 311
TspDTI	ATGAA	3 cut(s)	407, 453, 630
TspRI	CASTG	2 cut(s)	33, 617
Tth111I	GACNNNGTC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	266, 637
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	2 cut(s)	6, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.