pycom12g03340

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
3107633 .. 3108857
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03340.2

Sequence Viewer

Length: 1107 bp
ATGGACAATGTGGGATCAAGTGCCGCGGCCGTTGAGGGCGCGCAAAAATTTCTCAACATTGCATACAGTGCTTTCAACTCAAAGTTATCGTCGTGCCGGAGATGCCGGCTATTAGTCCAACTGATTAAATTTAATCATTTCCCTAATCAACTATTAATTTATGGCAACGTTTGTTTAATCCAACTTTGTTTTCTCAGAATCCGAAACTCCTCGGAAAATAAATTAACCCTAGAAACTATCGAATTATTTATTTTTATTCTTTTTTTTATTTCTCTTGGAAACCAAAAAAACTCCGAAAAATCGAAGAAAAAAAATCTCCCATTTGAAATGGCTGCTGCTTCATCCGCATCGCAAGACAAGACTGTCACGGGTTATCCAACTCCGCCCGGCCAATACGCCGCCGGATACCCGGCCACCACAGCCTATCCCTATGTGGCTGCACCGCCGCACCTCAATCCCAATACTTACCAGCCCACGGGCCCGCCACCTCCCTACTACAATCCCCAGTCCAATGGGCCCTTCAGGCGCAAACCCACCATCCTCTGCCGCATCATGATCGCCGCCGTTGCCGTCTTCACCATCATGTCCATCATCTTCTTCATCTCCTGGCTCGCCCTCCGCCCTCAACTCCCCAAGTTCCGGGTCGAATCGGCCACCGTCTCCCCGCTCAACGCGACAGGCTCCGAGCTCACCGCCACTTGGGACTTCACCCTCCTCGCCGCCAACCCCAACCACAAGCTCACCATCTTCTACGACAGACTCGAGGCCTCGCTTATATACAACGATGAAGTTCTGCTCACCGCGGCGGCGCTGCCTCCCTTCGTATTAGCCAAGAGGAACCAGACGCACGTCAATATCAAGCTCGCGACGGTGGGGGTTTACGTCGACGACGAGGTGGCGAGGGAAATCGCCGACGGGAAGGATCGGGGGTCGGTGAGGTTCGGAGTGGGTGTGGAGGCGTTGGTCCGGTTTAAGTCAGGGGTGTTTCAAACGAGACGTCGGTTGTTGCGGGTCTTCTGCGATGGGGTCGAATTCACCGGGTTTGCCCGGAATAATGGGACCGGGACTTTGACGGGTCAGGCAAGTCCGTGCAAGGTTGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

369

Amino Acids

40.63

Weight (kDa)

9.51

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AatII GACGTC 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 885
AccII CGCG 5 cut(s) 26, 41, 674, 803, 866
AclI AACGTT 1 cut(s) 168
AclWI GGATC 2 cut(s) 22, 930
AcoI YGGCCR 4 cut(s) 27, 388, 411, 651
AcsI RAATTY 3 cut(s) 47, 128, 1031
AcuI CTGAAG 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 997
AfiI CCNNNNNNNGG 3 cut(s) 475, 639, 699
AgsI TTSAA 3 cut(s) 76, 326, 989
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 1 cut(s) 605
AjuI GAANNNNNNNTTGG 4 cut(s) 174, 206, 503, 535
AluBI AGCT 3 cut(s) 688, 739, 862
AluI AGCT 3 cut(s) 688, 739, 862
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 2 cut(s) 664, 988
AlwI GGATC 2 cut(s) 22, 930
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 7 cut(s) 27, 388, 411, 478, 515, 651, 765
ApaI GGGCCC 2 cut(s) 482, 519
ApeKI GCWGC 4 cut(s) 332, 335, 437, 811
ApoI RAATTY 3 cut(s) 47, 128, 1031
ArsI GACNNNNNNTTYG 6 cut(s) 74, 106, 982, 1014, 1051, 1083
AseI ATTAAT 1 cut(s) 155
AspLEI GCGC 4 cut(s) 41, 43, 528, 811
AspS9I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
AsuC2I CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
AsuHPI GGTGA 7 cut(s) 568, 682, 700, 733, 790, 946, 1027
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 964, 1059
BaeGI GKGCMC 2 cut(s) 482, 519
BanII GRGCYC 3 cut(s) 482, 519, 690
BbsI GAAGAC 2 cut(s) 565, 1006
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 4 cut(s) 319, 322, 424, 798
BccI CCATC 5 cut(s) 545, 587, 596, 752, 1016
BceAI ACGGC 3 cut(s) 14, 548, 554
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 607
BciVI GTATCC 1 cut(s) 398
BcnI CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
BcoDI GTCTC 2 cut(s) 664, 988
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 812
BfuI GTATCC 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 523
Bme1390I CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
Bme18I GGWCC 2 cut(s) 964, 1059
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
BmiI GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
BmrFI CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 3 cut(s) 92, 356, 558
BmuI ACTGGG 1 cut(s) 499
BoxI GACNNNNGTC 1 cut(s) 848
BpiI GAAGAC 2 cut(s) 565, 1006
BpuMI CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
BsaHI GRCGYC 1 cut(s) 997
BsaJI CCNNGG 4 cut(s) 24, 210, 474, 801
BsaWI WCCGGW 1 cut(s) 966
BsaXI ACNNNNNCTCC 2 cut(s) 936, 966
Bsc4I CCNNNNNNNGG 3 cut(s) 475, 639, 699
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 4 cut(s) 24, 210, 474, 801
BseGI GGATG 2 cut(s) 341, 537
BseLI CCNNNNNNNGG 3 cut(s) 475, 639, 699
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 505
BsePI GCGCGC 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 199, 704
BseSI GKGCMC 2 cut(s) 482, 519
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 4 cut(s) 319, 322, 424, 798
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 5 cut(s) 26, 41, 674, 803, 866
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 1 cut(s) 761
BslFI GGGAC 3 cut(s) 716, 1072, 1078
BslI CCNNNNNNNGG 3 cut(s) 475, 639, 699
BsmAI GTCTC 2 cut(s) 664, 988
BsmBI CGTCTC 2 cut(s) 664, 988
BsmFI GGGAC 3 cut(s) 716, 1072, 1078
BsnI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BsoBI CYCGRG 1 cut(s) 761
Bsp120I GGGCCC 2 cut(s) 478, 515
Bsp1286I GDGCHC 3 cut(s) 482, 519, 690
Bsp143I GATC 3 cut(s) 14, 555, 922
Bsp68I TCGCGA 1 cut(s) 866
BspANI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 5 cut(s) 26, 41, 674, 803, 866
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
BspPI GGATC 2 cut(s) 22, 930
BsrBI CCGCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 4 cut(s) 24, 210, 474, 801
BssHII GCGCGC 1 cut(s) 39
BssMI GATC 3 cut(s) 14, 555, 922
BssNI GRCGYC 1 cut(s) 997
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 4 cut(s) 68, 364, 658, 871
BstACI GRCGYC 1 cut(s) 997
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 5 cut(s) 41, 107, 482, 612, 864
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 3 cut(s) 24, 474, 801
BstF5I GGATG 2 cut(s) 341, 537
BstFNI CGCG 5 cut(s) 26, 41, 674, 803, 866
BstH2I RGCGCY 1 cut(s) 812
BstHHI GCGC 4 cut(s) 41, 43, 528, 811
BstKTI GATC 3 cut(s) 17, 558, 925
BstMAI GTCTC 2 cut(s) 664, 988
BstMBI GATC 3 cut(s) 14, 555, 922
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 6 cut(s) 68, 102, 344, 419, 523, 566
BstNI CCWGG 1 cut(s) 607
BstPAI GACNNNNGTC 1 cut(s) 848
BstSCI CCNGG 7 cut(s) 385, 408, 605, 639, 1037, 1046, 1061
BstSLI GKGCMC 2 cut(s) 482, 519
BstUI CGCG 5 cut(s) 26, 41, 674, 803, 866
BstV1I GCAGC 4 cut(s) 319, 322, 424, 798
BstV2I GAAGAC 2 cut(s) 565, 1006
BstXI CCANNNNNNTGG 1 cut(s) 512
BstZI CGGCCG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 398
BsuRI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BtgI CCRYGG 3 cut(s) 24, 474, 801
BtgZI GCGATG 2 cut(s) 333, 1035
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 2 cut(s) 341, 537
BtsIMutI CAGTG 1 cut(s) 73
BtuMI TCGCGA 1 cut(s) 866
Cac8I GCNNGC 5 cut(s) 41, 107, 482, 612, 864
CciI TCATGA 1 cut(s) 552
CfoI GCGC 4 cut(s) 41, 43, 528, 811
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
Cfr42I CCGCGG 2 cut(s) 27, 804
CseI GACGC 1 cut(s) 853
CviAII CATG 2 cut(s) 553, 583
DdeI CTNAG 1 cut(s) 194
DpnI GATC 3 cut(s) 16, 557, 924
DpnII GATC 3 cut(s) 14, 555, 922
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 4 cut(s) 27, 388, 411, 651
EagI CGGCCG 1 cut(s) 27
EciI GGCGGA 2 cut(s) 372, 608
Ecl136II GAGCTC 1 cut(s) 688
EclXI CGGCCG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 767
Eco24I GRGCYC 3 cut(s) 482, 519, 690
Eco47I GGWCC 2 cut(s) 964, 1059
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 516
EcoRI GAATTC 1 cut(s) 1031
EcoRII CCWGG 1 cut(s) 605
EcoT38I GRGCYC 3 cut(s) 482, 519, 690
Esp3I CGTCTC 2 cut(s) 664, 988
FaeI CATG 2 cut(s) 556, 586
FaiI YATR 7 cut(s) 64, 162, 432, 554, 584, 776, 778
FaqI GGGAC 3 cut(s) 716, 1072, 1078
FatI CATG 2 cut(s) 552, 582
FauI CCCGC 3 cut(s) 489, 672, 1002
FblI GTMKAC 1 cut(s) 885
FokI GGATG 2 cut(s) 328, 524
FriOI GRGCYC 3 cut(s) 482, 519, 690
FspBI CTAG 1 cut(s) 230
GlaI GCGC 4 cut(s) 40, 42, 527, 810
HaeII RGCGCY 1 cut(s) 812
HaeIII GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
HgaI GACGC 1 cut(s) 853
HhaI GCGC 4 cut(s) 41, 43, 528, 811
Hin1I GRCGYC 1 cut(s) 997
Hin1II CATG 2 cut(s) 556, 586
Hin6I GCGC 4 cut(s) 39, 41, 526, 809
HinP1I GCGC 4 cut(s) 39, 41, 526, 809
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 3 cut(s) 198, 647, 759
HphI GGTGA 7 cut(s) 568, 682, 700, 733, 790, 946, 1027
Hpy166II GTNNAC 2 cut(s) 880, 886
Hpy188I TCNGA 6 cut(s) 197, 203, 214, 295, 685, 944
Hpy188III TCNNGA 2 cut(s) 553, 865
Hpy8I GTNNAC 2 cut(s) 880, 886
Hpy99I CGWCG 7 cut(s) 94, 871, 887, 890, 893, 917, 1002
HpyAV CCTTC 3 cut(s) 529, 829, 913
HpyCH4III ACNGT 4 cut(s) 68, 364, 658, 871
HpyCH4IV ACGT 4 cut(s) 168, 849, 882, 997
HpyCH4V TGCA 3 cut(s) 62, 440, 1092
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 102, 344, 419, 523, 566
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 4 cut(s) 168, 849, 882, 997
Hsp92I GRCGYC 1 cut(s) 997
Hsp92II CATG 2 cut(s) 556, 586
HspAI GCGC 4 cut(s) 39, 41, 526, 809
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
KspI CCGCGG 2 cut(s) 27, 804
Kzo9I GATC 3 cut(s) 14, 555, 922
LmnI GCTCC 1 cut(s) 686
Lsp1109I GCAGC 4 cut(s) 319, 322, 424, 798
LweI GCATC 3 cut(s) 92, 356, 558
MaeI CTAG 1 cut(s) 230
MaeII ACGT 4 cut(s) 168, 849, 882, 997
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 16, 557, 924
MbiI CCGCTC 1 cut(s) 667
MboI GATC 3 cut(s) 14, 555, 922
MboII GAAGA 6 cut(s) 316, 565, 586, 589, 739, 1006
MhlI GDGCHC 3 cut(s) 482, 519, 690
MluCI AATT 6 cut(s) 47, 128, 156, 221, 242, 1031
MlyI GAGTC 1 cut(s) 753
MmeI TCCRAC 3 cut(s) 142, 205, 401
MroNI GCCGGC 1 cut(s) 105
MseI TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 2 cut(s) 26, 803
MspR9I CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
MvaI CCWGG 1 cut(s) 607
MvnI CGCG 5 cut(s) 26, 41, 674, 803, 866
MwoI GCNNNNNNNGC 6 cut(s) 68, 102, 344, 419, 523, 566
NaeI GCCGGC 1 cut(s) 107
NciI CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
NdeII GATC 3 cut(s) 14, 555, 922
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 2 cut(s) 556, 586
NlaIV GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
NmuCI GTSAC 1 cut(s) 364
NruI TCGCGA 1 cut(s) 866
PaeR7I CTCGAG 1 cut(s) 761
PagI TCATGA 1 cut(s) 552
PauI GCGCGC 1 cut(s) 39
PceI AGGCCT 1 cut(s) 767
PcsI WCGNNNNNNNCGW 2 cut(s) 759, 888
PdiI GCCGGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 198, 647
PleI GAGTC 1 cut(s) 753
PpsI GAGTC 1 cut(s) 753
PshAI GACNNNNGTC 1 cut(s) 848
PshBI ATTAAT 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 690
Psp1406I AACGTT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
PspN4I GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
PspOMI GGGCCC 2 cut(s) 478, 515
PspPI GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
PspXI VCTCGAGB 1 cut(s) 761
PteI GCGCGC 1 cut(s) 39
RruI TCGCGA 1 cut(s) 866
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 690
SacII CCGCGG 2 cut(s) 27, 804
SalI GTCGAC 1 cut(s) 884
SaqAI TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
Sau3AI GATC 3 cut(s) 14, 555, 922
Sau96I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
SchI GAGTC 1 cut(s) 753
ScrFI CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
SduI GDGCHC 3 cut(s) 482, 519, 690
SfaNI GCATC 3 cut(s) 92, 356, 558
Sfr274I CTCGAG 1 cut(s) 761
Sfr303I CCGCGG 2 cut(s) 27, 804
SgrBI CCGCGG 2 cut(s) 27, 804
SgrDI CGTCGACG 1 cut(s) 884
SinI GGWCC 2 cut(s) 964, 1059
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 6 cut(s) 47, 128, 156, 221, 242, 1031
SseBI AGGCCT 1 cut(s) 767
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 690
StuI AGGCCT 1 cut(s) 767
StyD4I CCNGG 7 cut(s) 385, 408, 605, 639, 1037, 1046, 1061
TaaI ACNGT 4 cut(s) 68, 364, 658, 871
TaiI ACGT 4 cut(s) 171, 852, 885, 1000
TaqI TCGA 6 cut(s) 240, 302, 645, 762, 885, 1029
TasI AATT 6 cut(s) 47, 128, 156, 221, 242, 1031
TauI GCSGC 9 cut(s) 26, 29, 401, 448, 549, 563, 722, 806, 809
TfiI GAWTC 2 cut(s) 198, 647
Tru1I TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
Tru9I TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 4 cut(s) 332, 335, 437, 811
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 330, 589, 801
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 964, 1059
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 3 cut(s) 47, 128, 1031
XhoI CTCGAG 1 cut(s) 761
XmiI GTMKAC 1 cut(s) 885
XspI CTAG 1 cut(s) 230
ZraI GACGTC 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.