RLG00000023822

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001922
Physical Location & Seq
Forward (+)
28669899 .. 28670469
571 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023822

Sequence Viewer

Length: 528 bp
ATGGCTACTCCGGCCTGCTACCCATCCGCCCCACCCTATCCCTATCCATCTCCACCACCGCCGGACCACCCCTCGACCACAAATCCAGCCAACAACCCCCAGACCAATAGGCCAACTAGGTGTACCTCGCTCGGGGGCCACATCTGCAACTGCGTGGGCACACTCTTCGTCTTAACTATAGTCATAGCCTTGATCAGCATCCTTGTTTGGATGTTCTATTCGATAACCATGGAGAGTCCAGTACTTCCCGAGTTCAAGATCGAATCAACCACCGTCTCCCAACTCAATACGGAAGGCTCCTTGACCGCCACGTGGGACATCACTTTCCTCGCCAGTAACCCTAACCGCAAATACAAAATGTACTACGACATCATCCTTGCATCGGTCGGCTACCAATACGGTAACACCTTTTTCAGGCTAGGGCCAGTGCGGCGTTTGCCTCCCTTTGCTTTGAAAGAGAGGAACCACACACGTGTCTATTTCAAGCAAGAAGTGGTGAGGGAGTGGTTTGGCGATGCCGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

176

Amino Acids

19.68

Weight (kDa)

8.69

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 27, 59, 306, 346, 430
AcvI CACGTG 2 cut(s) 312, 473
AfaI GTAC 3 cut(s) 124, 243, 362
AfiI CCNNNNNNNGG 4 cut(s) 132, 312, 382, 414
AflIII ACRYGT 2 cut(s) 470, 472
AgsI TTSAA 3 cut(s) 256, 454, 484
AleI CACNNNNGTG 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 280
Ama87I CYCGRG 2 cut(s) 131, 248
AoxI GGCC 4 cut(s) 12, 110, 136, 422
AspS9I GGNCC 3 cut(s) 64, 136, 422
AsuHPI GGTGA 1 cut(s) 508
AvaI CYCGRG 2 cut(s) 131, 248
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 161
BbrPI CACGTG 2 cut(s) 312, 473
BccI CCATC 2 cut(s) 31, 55
BceAI ACGGC 1 cut(s) 503
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 117, 419
BfmI CTRYAG 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 430
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 2 cut(s) 131, 248
BmgT120I GGNCC 3 cut(s) 64, 136, 422
BmiI GGNNCC 3 cut(s) 137, 298, 464
BmsI GCATC 3 cut(s) 207, 389, 505
BsaAI YACGTR 2 cut(s) 312, 473
BsaBI GATNNNNATC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 228, 519
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 312, 382, 414
Bse1I ACTGG 3 cut(s) 239, 333, 425
Bse8I GATNNNNATC 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 228, 519
BseGI GGATG 4 cut(s) 23, 198, 216, 372
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 4 cut(s) 132, 312, 382, 414
BseNI ACTGG 3 cut(s) 239, 333, 425
BseSI GKGCMC 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 4 cut(s) 14, 112, 138, 424
BsiEI CGRYCG 1 cut(s) 387
BsiHKCI CYCGRG 2 cut(s) 131, 248
BsiSI CCGG 2 cut(s) 11, 62
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 4 cut(s) 132, 312, 382, 414
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 4 cut(s) 14, 112, 138, 424
BsoBI CYCGRG 2 cut(s) 131, 248
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 192, 258
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 5 cut(s) 27, 59, 306, 346, 430
BspANI GGCC 4 cut(s) 14, 112, 138, 424
BspLI GGNNCC 3 cut(s) 137, 298, 464
BsrI ACTGG 3 cut(s) 239, 333, 425
BssECI CCNNGG 2 cut(s) 228, 519
BssMI GATC 2 cut(s) 192, 258
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 274, 401
Bst6I CTCTTC 1 cut(s) 170
BstBAI YACGTR 2 cut(s) 312, 473
BstC8I GCNNGC 1 cut(s) 16
BstDSI CCRYGG 2 cut(s) 228, 519
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 4 cut(s) 23, 198, 216, 372
BstKTI GATC 2 cut(s) 195, 261
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 192, 258
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 4 cut(s) 11, 144, 430, 436
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 161
BsuRI GGCC 4 cut(s) 14, 112, 138, 424
BtgI CCRYGG 2 cut(s) 228, 519
BtsCI GGATG 4 cut(s) 23, 198, 216, 372
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 64, 136, 422
Csp6I GTAC 3 cut(s) 123, 242, 361
CviAII CATG 1 cut(s) 229
CviQI GTAC 3 cut(s) 123, 242, 361
DpnI GATC 2 cut(s) 194, 260
DpnII GATC 2 cut(s) 192, 258
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 64
Eco72I CACGTG 2 cut(s) 312, 473
Eco88I CYCGRG 2 cut(s) 131, 248
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 179, 185, 230, 526
FaqI GGGAC 1 cut(s) 329
FatI CATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 4 cut(s) 10, 185, 223, 359
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 2 cut(s) 117, 419
GluI GCNGC 1 cut(s) 431
HaeIII GGCC 4 cut(s) 14, 112, 138, 424
HapII CCGG 2 cut(s) 11, 62
Hin1II CATG 1 cut(s) 232
HinfI GANTC 2 cut(s) 235, 263
HpaII CCGG 2 cut(s) 11, 62
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 248, 256
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 274, 401
HpyCH4IV ACGT 2 cut(s) 311, 472
HpyCH4V TGCA 2 cut(s) 147, 380
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 144, 430, 436
HpySE526I ACGT 2 cut(s) 311, 472
Hsp92II CATG 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 2 cut(s) 192, 258
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 9 cut(s) 24, 28, 75, 99, 113, 252, 346, 400, 438
LweI GCATC 3 cut(s) 207, 389, 505
MaeI CTAG 2 cut(s) 117, 419
MaeII ACGT 2 cut(s) 311, 472
MaeIII GTNAC 2 cut(s) 335, 401
MalI GATC 2 cut(s) 194, 260
MboI GATC 2 cut(s) 192, 258
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 161
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 6 cut(s) 82, 136, 338, 450, 453, 492
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 2 cut(s) 11, 62
MwoI GCNNNNNNNGC 4 cut(s) 11, 144, 430, 436
NcoI CCATGG 1 cut(s) 228
NdeII GATC 2 cut(s) 192, 258
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 3 cut(s) 137, 298, 464
OliI CACNNNNGTG 1 cut(s) 471
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 243
PmaCI CACGTG 2 cut(s) 312, 473
PmlI CACGTG 2 cut(s) 312, 473
PpsI GAGTC 1 cut(s) 243
Ppu21I YACGTR 2 cut(s) 312, 473
PspCI CACGTG 2 cut(s) 312, 473
PspN4I GGNNCC 3 cut(s) 137, 298, 464
PspPI GGNCC 3 cut(s) 64, 136, 422
RsaI GTAC 3 cut(s) 124, 243, 362
RsaNI GTAC 3 cut(s) 123, 242, 361
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 2 cut(s) 192, 258
Sau96I GGNCC 3 cut(s) 64, 136, 422
ScaI AGTACT 1 cut(s) 243
SchI GAGTC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 161
SetI ASST 5 cut(s) 122, 128, 314, 410, 475
SfaNI GCATC 3 cut(s) 207, 389, 505
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 471
SsiI CCGC 5 cut(s) 27, 59, 306, 346, 430
SspMI CTAG 2 cut(s) 117, 419
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 274, 401
TaiI ACGT 2 cut(s) 314, 475
TaqI TCGA 3 cut(s) 74, 221, 261
TaqII GACCGA 1 cut(s) 373
TatI WGTACW 2 cut(s) 241, 360
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 412
XspI CTAG 2 cut(s) 117, 419
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.