Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

44652931 .. 44653176

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGATCTGGCTCATCCTCCGCCCCAAGATCCCCGACTTCCGAGTCGACTCCTTCACCGTCACCAACCTCAACGTCTCCTCCTCCCGCCAGTCCCTCACCGGCACCTGGTCCGTAGGCTTCGACGTCTTCAACCCCAACAAGAAGATGACCATCGAGTACGACGAGATCGGCTCCTCCGTCTTCTACCGCTCCGGCTTCATTTCCGAGACCCAAATCCCGCCGTTCCGGGAGTCCGCAGCGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

81

Amino Acids

9.22

Weight (kDa)

6.13

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	5 cut(s)	19, 85, 187, 218, 234
AclWI	GGATC	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	79, 200
AlwI	GGATC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	46, 52, 88
AvaII	GGWCC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	118, 172
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	2 cut(s)	205, 226
BciT130I	CCWGG	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	79, 200
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	106, 227
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	103, 172
BmrFI	CCNGG	2 cut(s)	106, 227
BpiI	GAAGAC	2 cut(s)	118, 172
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	3 cut(s)	67, 70, 163
BshNI	GGYRCC	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	99, 192, 226
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	79, 200
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	3, 27, 165
BspACI	CCGC	5 cut(s)	19, 85, 187, 218, 234
BspLI	GGNNCC	2 cut(s)	103, 172
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	3 cut(s)	3, 27, 165
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	3 cut(s)	6, 30, 168
BstMAI	GTCTC	2 cut(s)	79, 200
BstMBI	GATC	3 cut(s)	3, 27, 165
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	104, 225
BstV2I	GAAGAC	2 cut(s)	118, 172
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	12
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	157
CviJI	RGCY	4 cut(s)	10, 117, 171, 195
CviKI_1	RGCY	4 cut(s)	10, 117, 171, 195
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	3 cut(s)	5, 29, 167
DpnII	GATC	3 cut(s)	3, 27, 165
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	104
Esp3I	CGTCTC	1 cut(s)	79
FaqI	GGGAC	1 cut(s)	76
FauI	CCCGC	2 cut(s)	92, 225
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	242
HapII	CCGG	3 cut(s)	99, 192, 226
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	42, 47, 230
HpaII	CCGG	3 cut(s)	99, 192, 226
HphI	GGTGA	3 cut(s)	46, 52, 88
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	41, 205
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	125, 164
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	72, 123
HpySE526I	ACGT	2 cut(s)	72, 123
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	3, 27, 165
LmnI	GCTCC	2 cut(s)	176, 194
LpnPI	CCDG	6 cut(s)	91, 101, 112, 118, 205, 239
MabI	ACCWGGT	1 cut(s)	104
MaeII	ACGT	2 cut(s)	72, 123
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	5, 29, 167
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	3 cut(s)	3, 27, 165
MboII	GAAGA	3 cut(s)	118, 154, 172
MflI	RGATCY	1 cut(s)	27
MlyI	GAGTC	3 cut(s)	41, 51, 239
MnlI	CCTC	6 cut(s)	26, 77, 88, 91, 104, 184
MspI	CCGG	3 cut(s)	99, 192, 226
MspR9I	CCNGG	2 cut(s)	106, 227
MvaI	CCWGG	1 cut(s)	106
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	3, 27, 165
NlaIV	GGNNCC	2 cut(s)	103, 172
NmuCI	GTSAC	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 174
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	3 cut(s)	41, 50, 238
PpsI	GAGTC	3 cut(s)	41, 50, 238
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	103, 172
PspPI	GGNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	44
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	3, 27, 165
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	3 cut(s)	41, 51, 239
ScrFI	CCNGG	2 cut(s)	106, 227
SetI	ASST	4 cut(s)	69, 75, 107, 126
SexAI	ACCWGGT	1 cut(s)	104
SinI	GGWCC	1 cut(s)	108
SsiI	CCGC	5 cut(s)	19, 85, 187, 218, 234
StyD4I	CCNGG	2 cut(s)	104, 225
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	2 cut(s)	75, 126
TaqI	TCGA	3 cut(s)	45, 120, 153
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	2 cut(s)	100, 166
VpaK11BI	GGWCC	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	45
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.