Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

20248588 .. 20249094

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G018230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCACCCTAAACTCCCGGAGTTCAAGGTCGAATCGGCCACCGTGTCCCTACTCAACGTGACTCGCTCCGAGTTAACGGCCACGTGGGACATCAGCCTCCTCTCCACCAACCCCAACAAGAAACTCAGAATCAACTACGACCACGTCGAGGCCTCGATTGTCTACGGTGACCACAACCACATCAGGCTCGGGAGAACGCCGTTGCGTCCCTTCGTTGTGAACCATAGGAACCAGACACGTATAGACATGAAACTCGGAGCGGTGAGTGAATGGGTCGGCGATGACGTGGCGAATGAAATCTCCGACGACAAGTCTCGGGGATTGGTGACTTTCGGAGTCAGGCTGATGACTTCTGTGAGGTTTAAGTGTGGACTATGGCTGTCGAAATCCCGTTTGTTGCTGGTCACCTGCGATCGGGTCGATTTAGGGCTTTCTCCGAATAATGGGACCGGCACGTTGACGGGTCTGTCGAGGGACTGCCGGGTTCACTTCTATTCATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

168

Amino Acids

18.94

Weight (kDa)

9.33

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
AasI	GACNNNNNNGTC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	260
AcoI	YGGCCR	2 cut(s)	36, 78
AcvI	CACGTG	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	148, 414, 443
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	25
AhdI	GACNNNNNGTC	1 cut(s)	310
AjiI	CACGTC	2 cut(s)	145, 286
Alw26I	GTCTC	1 cut(s)	318
Ama87I	CYCGRG	2 cut(s)	188, 315
AoxI	GGCC	3 cut(s)	36, 78, 150
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	2 cut(s)	17, 482
AsuHPI	GGTGA	4 cut(s)	179, 274, 337, 397
AvaI	CYCGRG	2 cut(s)	188, 315
AvaII	GGWCC	1 cut(s)	447
BbrPI	CACGTG	1 cut(s)	84
BceAI	ACGGC	2 cut(s)	93, 184
BcnI	CCSGG	2 cut(s)	17, 482
BcoDI	GTCTC	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	416
Bme1390I	CCNGG	2 cut(s)	17, 482
Bme18I	GGWCC	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmeT110I	CYCGRG	2 cut(s)	188, 315
BmgBI	CACGTC	2 cut(s)	145, 286
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	2 cut(s)	230, 448
BmrFI	CCNGG	2 cut(s)	17, 482
BpuMI	CCSGG	2 cut(s)	17, 482
BsaAI	YACGTR	2 cut(s)	84, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 414, 443
Bse118I	RCCGGY	1 cut(s)	449
BseLI	CCNNNNNNNGG	3 cut(s)	148, 414, 443
BseMII	CTCAG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	3 cut(s)	38, 80, 152
BsiEI	CGRYCG	1 cut(s)	415
BsiHKCI	CYCGRG	2 cut(s)	188, 315
BsiSI	CCGG	3 cut(s)	17, 450, 481
BslFI	GGGAC	5 cut(s)	31, 101, 192, 460, 488
BslI	CCNNNNNNNGG	3 cut(s)	148, 414, 443
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	5 cut(s)	31, 101, 192, 460, 488
BsnI	GGCC	3 cut(s)	38, 80, 152
BsoBI	CYCGRG	2 cut(s)	188, 315
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	3 cut(s)	38, 80, 152
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	230, 448
BspMI	ACCTGC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	449
BssMI	GATC	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	43, 167
BstBAI	YACGTR	2 cut(s)	84, 239
BstDEI	CTNAG	1 cut(s)	125
BstEII	GGTNACC	2 cut(s)	167, 403
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	412
BstMCI	CGRYCG	1 cut(s)	415
BstPI	GGTNACC	2 cut(s)	167, 403
BstSCI	CCNGG	2 cut(s)	15, 480
BsuRI	GGCC	3 cut(s)	38, 80, 152
BtgZI	GCGATG	1 cut(s)	294
BtrI	CACGTC	2 cut(s)	145, 286
BveI	ACCTGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	1 cut(s)	194
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	8 cut(s)	38, 80, 96, 152, 187, 343, 379, 430
CviKI_1	RGCY	8 cut(s)	38, 80, 96, 152, 187, 343, 379, 430
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
DrdI	GACNNNNNNGTC	1 cut(s)	466
DriI	GACNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	2 cut(s)	36, 78
Eam1105I	GACNNNNNGTC	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	447
Eco72I	CACGTG	1 cut(s)	84
Eco88I	CYCGRG	2 cut(s)	188, 315
Eco91I	GGTNACC	2 cut(s)	167, 403
EcoO65I	GGTNACC	2 cut(s)	167, 403
FaeI	CATG	1 cut(s)	250
FaiI	YATR	4 cut(s)	225, 242, 248, 376
FaqI	GGGAC	5 cut(s)	31, 101, 192, 460, 488
FatI	CATG	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	38, 80, 152
HapII	CCGG	3 cut(s)	17, 450, 481
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	250
HincII	GTYRAC	2 cut(s)	75, 459
HindII	GTYRAC	2 cut(s)	75, 459
HinfI	GANTC	4 cut(s)	32, 61, 129, 336
HpaI	GTTAAC	1 cut(s)	75
HpaII	CCGG	3 cut(s)	17, 450, 481
HphI	GGTGA	4 cut(s)	179, 274, 337, 397
Hpy166II	GTNNAC	6 cut(s)	75, 163, 220, 371, 459, 487
Hpy188I	TCNGA	6 cut(s)	70, 128, 257, 304, 335, 438
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	6 cut(s)	75, 163, 220, 371, 459, 487
Hpy99I	CGWCG	2 cut(s)	149, 308
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	43, 167
HpyCH4IV	ACGT	6 cut(s)	57, 83, 144, 238, 285, 455
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	6 cut(s)	57, 83, 144, 238, 285, 455
Hsp92II	CATG	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	2 cut(s)	71, 257
LpnPI	CCDG	8 cut(s)	30, 169, 245, 325, 386, 421, 463, 494
MaeII	ACGT	6 cut(s)	57, 83, 144, 238, 285, 455
MaeIII	GTNAC	4 cut(s)	58, 167, 325, 403
MalI	GATC	1 cut(s)	414
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	1 cut(s)	412
MlyI	GAGTC	2 cut(s)	55, 345
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	6 cut(s)	107, 110, 142, 163, 351, 465
MseI	TTAA	2 cut(s)	74, 363
MspI	CCGG	3 cut(s)	17, 450, 481
MspR9I	CCNGG	2 cut(s)	17, 482
NciI	CCSGG	2 cut(s)	17, 482
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	230, 448
NmuCI	GTSAC	4 cut(s)	58, 167, 325, 403
PaqCI	CACCTGC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 282, 467
PfeI	GAWTC	2 cut(s)	32, 129
PflFI	GACNNNGTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	15
Ple19I	CGATCG	1 cut(s)	415
PleI	GAGTC	2 cut(s)	55, 344
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	2 cut(s)	55, 344
Ppu21I	YACGTR	2 cut(s)	84, 239
PspCI	CACGTG	1 cut(s)	84
PspEI	GGTNACC	2 cut(s)	167, 403
PspN4I	GGNNCC	2 cut(s)	230, 448
PspPI	GGNCC	1 cut(s)	447
PsyI	GACNNNGTC	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	74, 363
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	2 cut(s)	55, 345
ScrFI	CCNGG	2 cut(s)	17, 482
SetI	ASST	9 cut(s)	30, 60, 86, 147, 241, 288, 362, 410, 458
SinI	GGWCC	1 cut(s)	447
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	15, 480
TaaI	ACNGT	2 cut(s)	43, 167
TaiI	ACGT	6 cut(s)	60, 86, 147, 241, 288, 458
TaqI	TCGA	6 cut(s)	30, 147, 155, 383, 420, 470
TfiI	GAWTC	2 cut(s)	32, 129
Tru1I	TTAA	2 cut(s)	74, 363
Tru9I	TTAA	2 cut(s)	74, 363
TseFI	GTSAC	4 cut(s)	58, 167, 325, 403
Tsp45I	GTSAC	4 cut(s)	58, 167, 325, 403
TspDTI	ATGAA	3 cut(s)	263, 309, 486
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.