Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

2587123 .. 2587899

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTGCTTCTTCGTCCCAAGGACAAGACAAGACTGTCACCGGCTATCCAGCTCCGCCGCCCCAATTTGCCGCCGGCTACCCTGCCGCAGCTCCCTACCCTTATGCGGCCCCACCGCCGCACCCCAACCGCAATAATTACCATCCCACGGGCCCACCACCTCCCTACTACAACCCTCAGCCCAATGGGCCCTTCAGGCGCAAACCCACCGTCCTCTGCCGCATCATCATCGCCGCCGTCGCTCTGTTCGCCGTCATGTCCATCATCTCCTTCATCTCCTGGCTCGTCCTCCGCCCCCAACTCCCCGAGTTCCGGGTCGAATCGGCCAGCGTCTCTCCGCTCAACGCGACTAGCTCCGAGCTAACCGCCACGTGGGACTTCACCCTCCTCGCCGCCAACCCCAACCACAAGCTCACCATCTTCTACGACCGCCTCACGGCCTCGCCCGTGTACGGCAGAGTTCGGCTCACCACGGCGGCGGTGCCTCCCTTCGTCTCAGCCAAGAGGAACCAGACGCGCGTCAATTTCAAGCTCGCGACGGTGGGGGAATACGTCGGCGACAACGTGGCGAGGGGCATCGCCGACGGGAAGGATCGCGGGTCGGTGAGGTTCGGAGTGTGGGTGGCGGCGTGGGTTCGGTTTAAGTCTGGGGTGTTTCAATCGAGATCGCGGTTGTTGCAGGTCTACTGCAATCGGGTCGAATTCACCGGGTTTGCCCGGAATAATGGGACCGGGACTTTGACGGGTCAGTCAAGTCCGTGCGAAGTTGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

259

Amino Acids

28.14

Weight (kDa)

10.01

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	35, 748
Acc36I	ACCTGC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	6 cut(s)	347, 517, 519, 536, 597, 670
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	178
AcvI	CACGTG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	6 cut(s)	106, 148, 312, 372, 436, 452
AgsI	TTSAA	2 cut(s)	529, 659
AjnI	CCWGG	1 cut(s)	278
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	6 cut(s)	53, 92, 354, 361, 412, 532
AluI	AGCT	6 cut(s)	53, 92, 354, 361, 412, 532
Alw26I	GTCTC	2 cut(s)	337, 499
AlwI	GGATC	1 cut(s)	600
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	5 cut(s)	108, 151, 188, 324, 438
ApaI	GGGCCC	2 cut(s)	155, 192
ApeKI	GCWGC	2 cut(s)	5, 89
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	4 cut(s)	195, 227, 721, 753
AspLEI	GCGC	2 cut(s)	201, 519
AspS9I	GGNCC	6 cut(s)	109, 151, 152, 188, 189, 729
AsuC2I	CCSGG	4 cut(s)	314, 709, 718, 733
AsuHPI	GGTGA	6 cut(s)	31, 373, 406, 460, 616, 697
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	729
BaeGI	GKGCMC	2 cut(s)	155, 192
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	2 cut(s)	155, 192
BbrPI	CACGTG	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	150, 269, 425
BceAI	ACGGC	5 cut(s)	221, 236, 453, 469, 489
BcgI	CGANNNNNNTGC	4 cut(s)	211, 245, 679, 713
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	4 cut(s)	314, 709, 718, 733
BcoDI	GTCTC	2 cut(s)	337, 499
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	670
BglI	GCCNNNNNGGC	2 cut(s)	187, 196
Bme1390I	CCNGG	5 cut(s)	280, 314, 709, 718, 733
Bme18I	GGWCC	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	6 cut(s)	109, 151, 152, 188, 189, 729
BmiI	GGNNCC	6 cut(s)	111, 153, 190, 483, 509, 730
BmrFI	CCNGG	5 cut(s)	280, 314, 709, 718, 733
BmsI	GCATC	2 cut(s)	231, 585
BoxI	GACNNNNGTC	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
Bpu10I	CCTNAGC	1 cut(s)	177
BpuMI	CCSGG	4 cut(s)	314, 709, 718, 733
BsaAI	YACGTR	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	19, 147, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	6 cut(s)	106, 148, 312, 372, 436, 452
Bse118I	RCCGGY	2 cut(s)	41, 74
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	19, 147, 471
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	6 cut(s)	106, 148, 312, 372, 436, 452
BseMII	CTCAG	2 cut(s)	191, 510
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	2 cut(s)	155, 192
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	6 cut(s)	347, 517, 519, 536, 597, 670
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	5 cut(s)	110, 153, 190, 326, 440
BshNI	GGYRCC	1 cut(s)	481
BsiEI	CGRYCG	1 cut(s)	430
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	6 cut(s)	42, 75, 313, 708, 718, 732
BslFI	GGGAC	3 cut(s)	389, 742, 748
BslI	CCNNNNNNNGG	6 cut(s)	106, 148, 312, 372, 436, 452
BsmAI	GTCTC	2 cut(s)	337, 499
BsmBI	CGTCTC	2 cut(s)	337, 499
BsmFI	GGGAC	3 cut(s)	389, 742, 748
BsnI	GGCC	5 cut(s)	110, 153, 190, 326, 440
BsoBI	CYCGRG	1 cut(s)	305
Bsp120I	GGGCCC	2 cut(s)	151, 188
Bsp1286I	GDGCHC	2 cut(s)	155, 192
Bsp143I	GATC	2 cut(s)	592, 665
Bsp68I	TCGCGA	1 cut(s)	536
BspANI	GGCC	5 cut(s)	110, 153, 190, 326, 440
BspCNI	CTCAG	2 cut(s)	190, 509
BspFNI	CGCG	6 cut(s)	347, 517, 519, 536, 597, 670
BspLI	GGNNCC	6 cut(s)	111, 153, 190, 483, 509, 730
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	340
BsrFI	RCCGGY	2 cut(s)	41, 74
BssAI	RCCGGY	2 cut(s)	41, 74
BssECI	CCNNGG	3 cut(s)	19, 147, 471
BssMI	GATC	2 cut(s)	592, 665
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	37, 211, 541
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	76, 328, 534
BstDEI	CTNAG	2 cut(s)	177, 496
BstDSI	CCRYGG	2 cut(s)	147, 471
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	6 cut(s)	347, 517, 519, 536, 597, 670
BstHHI	GCGC	2 cut(s)	201, 519
BstKTI	GATC	2 cut(s)	595, 668
BstMAI	GTCTC	2 cut(s)	337, 499
BstMBI	GATC	2 cut(s)	592, 665
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 196, 239, 248, 676
BstNI	CCWGG	1 cut(s)	280
BstPAI	GACNNNNGTC	1 cut(s)	518
BstSCI	CCNGG	5 cut(s)	278, 312, 707, 716, 731
BstSLI	GKGCMC	2 cut(s)	155, 192
BstUI	CGCG	6 cut(s)	347, 517, 519, 536, 597, 670
BstV1I	GCAGC	1 cut(s)	101
BsuRI	GGCC	5 cut(s)	110, 153, 190, 326, 440
BtgI	CCRYGG	2 cut(s)	147, 471
BtgZI	GCGATG	2 cut(s)	214, 562
BtsCI	GGATG	1 cut(s)	142
BtuMI	TCGCGA	1 cut(s)	536
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	76, 328, 534
CfoI	GCGC	2 cut(s)	201, 519
Cfr10I	RCCGGY	2 cut(s)	41, 74
Cfr13I	GGNCC	6 cut(s)	109, 151, 152, 188, 189, 729
CseI	GACGC	3 cut(s)	319, 508, 523
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	1 cut(s)	256
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	177, 496
DpnI	GATC	2 cut(s)	594, 667
DpnII	GATC	2 cut(s)	592, 665
DrdI	GACNNNNNNGTC	2 cut(s)	35, 748
DseDI	GACNNNNNNGTC	2 cut(s)	35, 748
EaeI	YGGCCR	1 cut(s)	324
EciI	GGCGGA	2 cut(s)	45, 281
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	155, 192
Eco47I	GGWCC	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	178
Eco72I	CACGTG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	2 cut(s)	155, 192
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	2 cut(s)	337, 499
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	105, 257, 775
FaqI	GGGAC	3 cut(s)	389, 742, 748
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	590
FblI	GTMKAC	1 cut(s)	684
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	2 cut(s)	155, 192
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	2 cut(s)	200, 518
HaeIII	GGCC	5 cut(s)	110, 153, 190, 326, 440
HapII	CCGG	6 cut(s)	42, 75, 313, 708, 718, 732
HgaI	GACGC	3 cut(s)	319, 508, 523
HhaI	GCGC	2 cut(s)	201, 519
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	2 cut(s)	199, 517
HinP1I	GCGC	2 cut(s)	199, 517
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	6 cut(s)	42, 75, 313, 708, 718, 732
HphI	GGTGA	6 cut(s)	31, 373, 406, 460, 616, 697
Hpy166II	GTNNAC	2 cut(s)	451, 685
Hpy188I	TCNGA	2 cut(s)	358, 614
Hpy188III	TCNNGA	2 cut(s)	535, 663
Hpy8I	GTNNAC	2 cut(s)	451, 685
Hpy99I	CGWCG	4 cut(s)	242, 541, 557, 587
HpyAV	CCTTC	4 cut(s)	202, 280, 499, 583
HpyCH4III	ACNGT	3 cut(s)	37, 211, 541
HpyCH4IV	ACGT	3 cut(s)	371, 552, 564
HpyCH4V	TGCA	2 cut(s)	679, 690
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 196, 239, 248, 676
HpyF3I	CTNAG	2 cut(s)	177, 496
HpySE526I	ACGT	3 cut(s)	371, 552, 564
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	2 cut(s)	199, 517
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	592, 665
LmnI	GCTCC	3 cut(s)	58, 97, 359
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	231, 585
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	3 cut(s)	371, 552, 564
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	594, 667
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	2 cut(s)	592, 665
MboII	GAAGA	2 cut(s)	3, 412
MhlI	GDGCHC	2 cut(s)	155, 192
MluCI	AATT	4 cut(s)	65, 136, 523, 701
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	642
MspI	CCGG	6 cut(s)	42, 75, 313, 708, 718, 732
MspR9I	CCNGG	5 cut(s)	280, 314, 709, 718, 733
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	6 cut(s)	347, 517, 519, 536, 597, 670
MwoI	GCNNNNNNNGC	5 cut(s)	187, 196, 239, 248, 676
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	4 cut(s)	314, 709, 718, 733
NdeII	GATC	2 cut(s)	592, 665
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	6 cut(s)	111, 153, 190, 483, 509, 730
NmuCI	GTSAC	1 cut(s)	37
NruI	TCGCGA	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
Ppu21I	YACGTR	1 cut(s)	372
PshAI	GACNNNNGTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	278
PspCI	CACGTG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	6 cut(s)	111, 153, 190, 483, 509, 730
PspOMI	GGGCCC	2 cut(s)	151, 188
PspPI	GGNCC	6 cut(s)	109, 151, 152, 188, 189, 729
RruI	TCGCGA	1 cut(s)	536
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	642
Sau3AI	GATC	2 cut(s)	592, 665
Sau96I	GGNCC	6 cut(s)	109, 151, 152, 188, 189, 729
ScrFI	CCNGG	5 cut(s)	280, 314, 709, 718, 733
SduI	GDGCHC	2 cut(s)	155, 192
SfaNI	GCATC	2 cut(s)	231, 585
SinI	GGWCC	1 cut(s)	729
Sse9I	AATT	4 cut(s)	65, 136, 523, 701
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	5 cut(s)	278, 312, 707, 716, 731
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	37, 211, 541
TaiI	ACGT	3 cut(s)	374, 555, 567
TaqI	TCGA	3 cut(s)	318, 662, 699
TasI	AATT	4 cut(s)	65, 136, 523, 701
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	5, 89
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	747
VpaK11BI	GGWCC	1 cut(s)	729
XapI	RAATTY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.