Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

46148110 .. 46148693

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG315700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACCATCGAGTACGACGAGATCGGCTCCTCCGTCTTCTACCGCTCCGGCTTCATTTCCGAGACCCAAATCCCGCCGTTCCGGCAGGGGAAGAGAGTACGCAGCGCCGTGAACGCGACCTTCTCCGCGGCGAACTCGTTCGTCGGCGACAGGGTGGCTAGTGGGATCGACGCGGACAGGGCGGCGCGTGGGGCGGTGAGTTTCAATATCAAGCTGCTGGCTAGGGTTCAGTTTCGGAAAGGCGGGTGGAGGCTGAGGCGGCGGCTGCTGAGGGTGCTGTGCCGTGACGTGCCGGTTACGATTTCGAATAATGGGACCGGGACGATGACCGGCGGAGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

114

Amino Acids

12.51

Weight (kDa)

11.43

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	4 cut(s)	116, 128, 173, 187
AclWI	GGATC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	14, 99
AgsI	TTSAA	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	102, 214, 265
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	107, 187
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	28
BbvCI	CCTCAGC	2 cut(s)	254, 269
BbvI	GCAGC	3 cut(s)	114, 201, 252
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	3 cut(s)	61, 92, 267
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	159, 222
BfoI	RGCGCY	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	82
BisI	GCNGC	7 cut(s)	103, 129, 183, 215, 260, 263, 266
BlsI	GCNGC	7 cut(s)	104, 130, 184, 216, 261, 264, 267
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	28, 316
BmrFI	CCNGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
Bpu10I	CCTNAGC	2 cut(s)	254, 269
Bpu14I	TTCGAA	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	126
Bse118I	RCCGGY	2 cut(s)	292, 329
BseDI	CCNNGG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	245, 260
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	114, 201, 252
Bsh1236I	CGCG	4 cut(s)	116, 128, 173, 187
BsiSI	CCGG	5 cut(s)	48, 82, 293, 318, 330
BslFI	GGGAC	2 cut(s)	328, 334
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	328, 334
Bso31I	GGTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	21, 165
BspCNI	CTCAG	2 cut(s)	246, 261
BspFNI	CGCG	4 cut(s)	116, 128, 173, 187
BspLI	GGNNCC	2 cut(s)	28, 316
BspPI	GGATC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	45
BsrFI	RCCGGY	2 cut(s)	292, 329
BssAI	RCCGGY	2 cut(s)	292, 329
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	21, 165
Bst6I	CTCTTC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	254, 269
BstDSI	CCRYGG	1 cut(s)	126
BstFNI	CGCG	4 cut(s)	116, 128, 173, 187
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	107, 187
BstKTI	GATC	2 cut(s)	24, 168
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	21, 165
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 113, 179, 191, 259, 265, 274
BstSCI	CCNGG	1 cut(s)	317
BstUI	CGCG	4 cut(s)	116, 128, 173, 187
BstV1I	GCAGC	3 cut(s)	114, 201, 252
BstV2I	GAAGAC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	2 cut(s)	107, 187
Cfr10I	RCCGGY	2 cut(s)	292, 329
Cfr13I	GGNCC	1 cut(s)	315
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	13, 98
CviJI	RGCY	7 cut(s)	27, 51, 158, 214, 221, 253, 265
CviKI_1	RGCY	7 cut(s)	27, 51, 158, 214, 221, 253, 265
CviQI	GTAC	2 cut(s)	13, 98
DdeI	CTNAG	2 cut(s)	254, 269
DpnI	GATC	2 cut(s)	23, 167
DpnII	GATC	2 cut(s)	21, 165
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	315
FaqI	GGGAC	2 cut(s)	328, 334
FauI	CCCGC	2 cut(s)	81, 236
Fnu4HI	GCNGC	7 cut(s)	103, 129, 183, 215, 260, 263, 266
Fsp4HI	GCNGC	7 cut(s)	103, 129, 183, 215, 260, 263, 266
FspBI	CTAG	2 cut(s)	159, 222
GlaI	GCGC	2 cut(s)	106, 186
GluI	GCNGC	7 cut(s)	103, 129, 183, 215, 260, 263, 266
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	5 cut(s)	48, 82, 293, 318, 330
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	2 cut(s)	107, 187
Hin6I	GCGC	2 cut(s)	105, 185
HinP1I	GCGC	2 cut(s)	105, 185
HpaII	CCGG	5 cut(s)	48, 82, 293, 318, 330
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	61, 237
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	3 cut(s)	20, 146, 173
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 113, 179, 191, 259, 265, 274
HpyF3I	CTNAG	2 cut(s)	254, 269
HpySE526I	ACGT	1 cut(s)	288
HspAI	GCGC	2 cut(s)	105, 185
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	21, 165
LmnI	GCTCC	2 cut(s)	32, 50
LpnPI	CCDG	8 cut(s)	61, 71, 95, 136, 163, 203, 306, 331
Lsp1109I	GCAGC	3 cut(s)	114, 201, 252
MaeI	CTAG	2 cut(s)	159, 222
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	284, 295
MalI	GATC	2 cut(s)	23, 167
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	2 cut(s)	21, 165
MboII	GAAGA	2 cut(s)	28, 103
MluCI	AATT	1 cut(s)	339
MnlI	CCTC	4 cut(s)	40, 243, 249, 264
MroXI	GAANNNNTTC	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	5 cut(s)	48, 82, 293, 318, 330
MspR9I	CCNGG	1 cut(s)	319
MvnI	CGCG	4 cut(s)	116, 128, 173, 187
MwoI	GCNNNNNNNGC	7 cut(s)	82, 113, 179, 191, 259, 265, 274
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	2 cut(s)	21, 165
NlaIV	GGNNCC	2 cut(s)	28, 316
NmuCI	GTSAC	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 30
PdmI	GAANNNNTTC	1 cut(s)	137
PkrI	GCNGC	7 cut(s)	104, 130, 184, 216, 261, 264, 267
PspN4I	GGNNCC	2 cut(s)	28, 316
PspPI	GGNCC	1 cut(s)	315
RsaI	GTAC	2 cut(s)	14, 99
RsaNI	GTAC	2 cut(s)	13, 98
SacII	CCGCGG	1 cut(s)	129
SatI	GCNGC	7 cut(s)	103, 129, 183, 215, 260, 263, 266
Sau3AI	GATC	2 cut(s)	21, 165
Sau96I	GGNCC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	319
SetI	ASST	3 cut(s)	122, 216, 291
Sfr303I	CCGCGG	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	305
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	315
Sse9I	AATT	1 cut(s)	339
SspMI	CTAG	2 cut(s)	159, 222
StyD4I	CCNGG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	9, 168, 305
TasI	AATT	1 cut(s)	339
TauI	GCSGC	4 cut(s)	131, 185, 262, 265
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	102, 214, 265
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	2 cut(s)	159, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.