Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

45739181 .. 45758857

Gene Structure 19677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCAGACCCTTCTCGGCCCGTCACCGGCTACCCAGCCCCGCCCTACGCCCAGCCCTACCCCGCCAACAACGGCCAGCCCAACGGCTCCTACCCCAACTACCCAGTCTACCAGCGTGGCCCCTACAACGCGTACACCGCACGCTCCGCCTTCGTCCGCCGCTTCGTCATCGCCATGGTCTTCCTCTTCGTCATCATCGGCTCCCTCCTCCTCATGATCTGGCTCATCCTCCGCCCCAGGATCCCCGACTTCCGAGTCGACTCGTTCACCGTCACCAACCTCAATGTCTCCTCCTCCCGCCAGTCCCTCACCGGCACCTGGTCCGTCGGCTTCGACGTCTTCAACCCCAACAAGAAGATGACCATCGAGTACGACGAGATCGGCTCCTCCGTCTTCTACCGCTCCGGCTTCATTTCCGAGACCCAGATCCCGCCGTTCCGGCAGGGGAAGAGAGTCCGCAGCGCCGTGAACGCGACCTTCTCCGCGGCGAACTCGTTCGTCGGCGACAGGGTGGCGAGTGGGATCGACGCGGATAGGGCGGCGCGTGGGGCGGTGAGTTTCAATATCAAGCTGCTGGCGAGGGTTCAGTTTCGGAAAGGCGGGTGGAGGCTGAGGCGGCGGCTGCTGAGGGTGTTGTGCCGTGACGTGCCGCTTACGGTTTCGAATAATGGGACCGGGACGATGACCGGCGGAGGTAGAGATTGCGGCGTTGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

239

Amino Acids

26.45

Weight (kDa)

10.75

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AatII	GACGTC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	402
AccI	GTMKAC	2 cut(s)	108, 258
AccII	CGCG	5 cut(s)	131, 473, 485, 530, 544
AclWI	GGATC	4 cut(s)	235, 248, 421, 530
AcoI	YGGCCR	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	134, 371
AfiI	CCNNNNNNNGG	2 cut(s)	26, 318
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	343, 562
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	2 cut(s)	236, 317
AluBI	AGCT	1 cut(s)	571
AluI	AGCT	1 cut(s)	571
Alw26I	GTCTC	2 cut(s)	292, 413
AlwI	GGATC	4 cut(s)	235, 248, 421, 530
AoxI	GGCC	3 cut(s)	17, 73, 118
ApeKI	GCWGC	3 cut(s)	459, 571, 622
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	2 cut(s)	464, 544
AspS9I	GGNCC	4 cut(s)	18, 119, 321, 672
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	5 cut(s)	16, 259, 265, 301, 565
AsuII	TTCGAA	1 cut(s)	662
AvaII	GGWCC	2 cut(s)	321, 672
BamHI	GGATCC	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	314
BbsI	GAAGAC	3 cut(s)	172, 331, 385
BbvCI	CCTCAGC	2 cut(s)	611, 626
BbvI	GCAGC	3 cut(s)	471, 558, 609
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	5 cut(s)	88, 100, 418, 449, 624
BciT130I	CCWGG	2 cut(s)	238, 319
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	2 cut(s)	292, 413
BfoI	RGCGCY	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	238, 319, 676
Bme18I	GGWCC	2 cut(s)	321, 672
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	4 cut(s)	18, 119, 321, 672
BmiI	GGNNCC	7 cut(s)	88, 121, 202, 242, 316, 385, 673
BmrFI	CCNGG	3 cut(s)	238, 319, 676
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	3 cut(s)	172, 331, 385
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
Bpu10I	CCTNAGC	2 cut(s)	611, 626
Bpu14I	TTCGAA	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	174, 236, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 318
Bse118I	RCCGGY	3 cut(s)	26, 311, 686
Bse1I	ACTGG	2 cut(s)	104, 301
Bse8I	GATNNNNATC	1 cut(s)	362
BseBI	CCWGG	2 cut(s)	238, 319
BseDI	CCNNGG	3 cut(s)	174, 236, 483
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	362
BseLI	CCNNNNNNNGG	2 cut(s)	26, 318
BseMII	CTCAG	2 cut(s)	602, 617
BseNI	ACTGG	2 cut(s)	104, 301
BseRI	GAGGAG	5 cut(s)	197, 200, 280, 283, 376
BseXI	GCAGC	3 cut(s)	471, 558, 609
BseYI	CCCAGC	2 cut(s)	34, 51
Bsh1236I	CGCG	5 cut(s)	131, 473, 485, 530, 544
BshFI	GGCC	3 cut(s)	19, 75, 120
BshNI	GGYRCC	1 cut(s)	314
BsiSI	CCGG	6 cut(s)	27, 312, 405, 439, 675, 687
BslFI	GGGAC	3 cut(s)	289, 685, 691
BslI	CCNNNNNNNGG	2 cut(s)	26, 318
BsmAI	GTCTC	2 cut(s)	292, 413
BsmFI	GGGAC	3 cut(s)	289, 685, 691
BsnI	GGCC	3 cut(s)	19, 75, 120
Bso31I	GGTCTC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	662
Bsp143I	GATC	5 cut(s)	216, 240, 378, 426, 522
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	3 cut(s)	19, 75, 120
BspCNI	CTCAG	2 cut(s)	603, 618
BspFNI	CGCG	5 cut(s)	131, 473, 485, 530, 544
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	7 cut(s)	88, 121, 202, 242, 316, 385, 673
BspPI	GGATC	4 cut(s)	235, 248, 421, 530
BspT104I	TTCGAA	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	402
BsrFI	RCCGGY	3 cut(s)	26, 311, 686
BsrI	ACTGG	2 cut(s)	104, 301
BssAI	RCCGGY	3 cut(s)	26, 311, 686
BssECI	CCNNGG	3 cut(s)	174, 236, 483
BssMI	GATC	5 cut(s)	216, 240, 378, 426, 522
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	238, 319
Bst4CI	ACNGT	2 cut(s)	271, 658
Bst6I	CTCTTC	2 cut(s)	191, 443
BstACI	GRCGYC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	77, 142, 576
BstDEI	CTNAG	2 cut(s)	611, 626
BstDSI	CCRYGG	2 cut(s)	174, 483
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	5 cut(s)	131, 473, 485, 530, 544
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	464, 544
BstKTI	GATC	5 cut(s)	219, 243, 381, 429, 525
BstMAI	GTCTC	2 cut(s)	292, 413
BstMBI	GATC	5 cut(s)	216, 240, 378, 426, 522
BstMWI	GCNNNNNNNGC	8 cut(s)	137, 146, 439, 470, 536, 548, 616, 622
BstNI	CCWGG	2 cut(s)	238, 319
BstSCI	CCNGG	3 cut(s)	236, 317, 674
BstUI	CGCG	5 cut(s)	131, 473, 485, 530, 544
BstV1I	GCAGC	3 cut(s)	471, 558, 609
BstV2I	GAAGAC	3 cut(s)	172, 331, 385
BstX2I	RGATCY	2 cut(s)	240, 426
BstYI	RGATCY	2 cut(s)	240, 426
BsuRI	GGCC	3 cut(s)	19, 75, 120
BtgI	CCRYGG	2 cut(s)	174, 483
BtgZI	GCGATG	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	77, 142, 576
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	2 cut(s)	464, 544
Cfr10I	RCCGGY	3 cut(s)	26, 311, 686
Cfr13I	GGNCC	4 cut(s)	18, 119, 321, 672
Cfr42I	CCGCGG	1 cut(s)	486
CseI	GACGC	1 cut(s)	536
CsiI	ACCWGGT	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	133, 370
CviAII	CATG	2 cut(s)	175, 214
CviQI	GTAC	2 cut(s)	133, 370
DdeI	CTNAG	2 cut(s)	611, 626
DpnI	GATC	5 cut(s)	218, 242, 380, 428, 524
DpnII	GATC	5 cut(s)	216, 240, 378, 426, 522
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	191, 443
EarI	CTCTTC	2 cut(s)	191, 443
EciI	GGCGGA	4 cut(s)	136, 146, 221, 705
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	321, 672
EcoRII	CCWGG	2 cut(s)	236, 317
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	178, 217
FaiI	YATR	2 cut(s)	176, 215
FaqI	GGGAC	3 cut(s)	289, 685, 691
FatI	CATG	2 cut(s)	174, 213
FauI	CCCGC	5 cut(s)	48, 70, 305, 438, 593
FblI	GTMKAC	2 cut(s)	108, 258
FokI	GGATG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	463, 543
GsaI	CCCAGC	2 cut(s)	38, 55
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	19, 75, 120
HapII	CCGG	6 cut(s)	27, 312, 405, 439, 675, 687
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	464, 544
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	178, 217
Hin6I	GCGC	2 cut(s)	462, 542
HinP1I	GCGC	2 cut(s)	462, 542
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	255, 260, 453
HpaII	CCGG	6 cut(s)	27, 312, 405, 439, 675, 687
HphI	GGTGA	5 cut(s)	16, 259, 265, 301, 565
Hpy166II	GTNNAC	5 cut(s)	109, 135, 259, 267, 469
Hpy188I	TCNGA	4 cut(s)	254, 418, 594, 719
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	5 cut(s)	109, 135, 259, 267, 469
Hpy99I	CGWCG	5 cut(s)	329, 338, 377, 503, 530
HpyAV	CCTTC	3 cut(s)	21, 160, 487
HpyCH4III	ACNGT	2 cut(s)	271, 658
HpyCH4IV	ACGT	2 cut(s)	336, 645
HpyF10VI	GCNNNNNNNGC	8 cut(s)	137, 146, 439, 470, 536, 548, 616, 622
HpyF3I	CTNAG	2 cut(s)	611, 626
HpySE526I	ACGT	2 cut(s)	336, 645
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	178, 217
HspAI	GCGC	2 cut(s)	462, 542
KspI	CCGCGG	1 cut(s)	486
Kzo9I	GATC	5 cut(s)	216, 240, 378, 426, 522
LmnI	GCTCC	5 cut(s)	92, 149, 206, 389, 407
Lsp1109I	GCAGC	3 cut(s)	471, 558, 609
MabI	ACCWGGT	1 cut(s)	317
MaeII	ACGT	2 cut(s)	336, 645
MaeIII	GTNAC	3 cut(s)	22, 271, 641
MalI	GATC	5 cut(s)	218, 242, 380, 428, 524
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	5 cut(s)	216, 240, 378, 426, 522
MboII	GAAGA	6 cut(s)	172, 178, 331, 367, 385, 460
MflI	RGATCY	2 cut(s)	240, 426
MluI	ACGCGT	1 cut(s)	129
MlyI	GAGTC	3 cut(s)	254, 264, 462
MroXI	GAANNNNTTC	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	6 cut(s)	27, 312, 405, 439, 675, 687
MspR9I	CCNGG	3 cut(s)	238, 319, 676
MvaI	CCWGG	2 cut(s)	238, 319
MvnI	CGCG	5 cut(s)	131, 473, 485, 530, 544
MwoI	GCNNNNNNNGC	8 cut(s)	137, 146, 439, 470, 536, 548, 616, 622
NciI	CCSGG	1 cut(s)	676
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	216, 240, 378, 426, 522
NlaIII	CATG	2 cut(s)	178, 217
NlaIV	GGNNCC	7 cut(s)	88, 121, 202, 242, 316, 385, 673
NmuCI	GTSAC	3 cut(s)	22, 271, 641
NspV	TTCGAA	1 cut(s)	662
PagI	TCATGA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	3 cut(s)	333, 372, 387
PdmI	GAANNNNTTC	1 cut(s)	494
PleI	GAGTC	3 cut(s)	254, 263, 461
PpsI	GAGTC	3 cut(s)	254, 263, 461
Psp6I	CCWGG	2 cut(s)	236, 317
PspFI	CCCAGC	2 cut(s)	34, 51
PspGI	CCWGG	2 cut(s)	236, 317
PspN4I	GGNNCC	7 cut(s)	88, 121, 202, 242, 316, 385, 673
PspPI	GGNCC	4 cut(s)	18, 119, 321, 672
PsuI	RGATCY	2 cut(s)	240, 426
RsaI	GTAC	2 cut(s)	134, 371
RsaNI	GTAC	2 cut(s)	133, 370
RseI	CAYNNNNRTG	1 cut(s)	173
SacII	CCGCGG	1 cut(s)	486
SalI	GTCGAC	1 cut(s)	257
Sau3AI	GATC	5 cut(s)	216, 240, 378, 426, 522
Sau96I	GGNCC	4 cut(s)	18, 119, 321, 672
SchI	GAGTC	3 cut(s)	254, 264, 462
ScrFI	CCNGG	3 cut(s)	238, 319, 676
SetI	ASST	7 cut(s)	282, 320, 339, 479, 573, 648, 697
SexAI	ACCWGGT	1 cut(s)	317
Sfr303I	CCGCGG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	662
SgrBI	CCGCGG	1 cut(s)	486
SinI	GGWCC	2 cut(s)	321, 672
SmiMI	CAYNNNNRTG	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	236, 317, 674
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	271, 658
TaiI	ACGT	2 cut(s)	339, 648
TaqI	TCGA	5 cut(s)	258, 333, 366, 525, 662
TauI	GCSGC	7 cut(s)	162, 488, 542, 619, 622, 652, 708
TseFI	GTSAC	3 cut(s)	22, 271, 641
TseI	GCWGC	3 cut(s)	459, 571, 622
Tsp45I	GTSAC	3 cut(s)	22, 271, 641
TspDTI	ATGAA	1 cut(s)	400
TspGWI	ACGGA	2 cut(s)	313, 379
VpaK11BI	GGWCC	2 cut(s)	321, 672
XmiI	GTMKAC	2 cut(s)	108, 258
XmnI	GAANNNNTTC	1 cut(s)	494
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.