Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Forward (+)

28398838 .. 28399578

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTACTATCCAAGACAACAAGACAGTCACTGGCTATCCGGTTCAGCAGGGTCAAGTCCCTACCGGCTACCGATCCGCTCCTCCCTATCCCTTCCCACCACCACCACCGGAGTTCCACTACAACCCCCAGCCCGCTGGGCCCAATAAGCCCACCTCCTTCGTCCGCGTCCTGATGGGATTCTTCGCCGTATCTGCAGTCATCATCTTAATTACCTTCTTGAATTGGCTGGTGATGCACCCTAAACTCCCGGAGTTCAAGGTCGAATCGGCCACCGTGTCCCTACTCAACGTGACTCGCTCCGAGTTAACGGCCACGTGGGACATCAGACTCCTCTCCACCAACCCCAACAAGAAACTCAGAATCAACTACGACCACGTCGAGGCCTCGATTGTCTACGGTGACCACAACCACATCAGGCTCGGGAGAACGCCGTTGCGTCCCTTCGTTGTGAACCATAGGAACCAGACACGTATAGACATGAAACTCGGAGCGGTGAGTGAATGGGTCGGCGATGACGTGGCGAATGAAATCTCCGACGACAGGTCTCGGGGATTGGTGACTTTTGGAGTCAGGCTGATGACTTCTGTGAGGTTTAAGTGTGGACTATGGCTGTCGAAATCCCGTTTGTTGCTGGTCACCTGCGATCGGGTCGATTTAGGGCTTTCTCCGAATAATGGGACCGGCACGTTGACGGGTCTGTCGAGGGAGTGCCGGGTTCACTTCTATTTATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

246

Amino Acids

27.67

Weight (kDa)

9.6

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	650
AasI	GACNNNNNNGTC	1 cut(s)	700
Acc36I	ACCTGC	1 cut(s)	650
AccBSI	CCGCTC	2 cut(s)	80, 494
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	78, 135, 166, 494
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	2 cut(s)	270, 312
AcvI	CACGTG	1 cut(s)	318
AfiI	CCNNNNNNNGG	4 cut(s)	382, 543, 648, 677
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	223, 259
AhdI	GACNNNNNGTC	1 cut(s)	544
AjiI	CACGTC	2 cut(s)	379, 520
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	2 cut(s)	422, 549
AoxI	GGCC	4 cut(s)	140, 270, 312, 384
ApaI	GGGCCC	1 cut(s)	144
AspS9I	GGNCC	3 cut(s)	140, 141, 681
AsuC2I	CCSGG	2 cut(s)	251, 716
AsuHPI	GGTGA	5 cut(s)	244, 413, 508, 571, 631
AvaI	CYCGRG	2 cut(s)	422, 549
AvaII	GGWCC	1 cut(s)	681
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	144
BbrPI	CACGTG	1 cut(s)	318
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	3 cut(s)	173, 327, 418
BcnI	CCSGG	2 cut(s)	251, 716
BcoDI	GTCTC	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	650
BglI	GCCNNNNNGGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	251, 716
Bme18I	GGWCC	1 cut(s)	681
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmeT110I	CYCGRG	2 cut(s)	422, 549
BmgBI	CACGTC	2 cut(s)	379, 520
BmgT120I	GGNCC	3 cut(s)	140, 141, 681
BmiI	GGNNCC	3 cut(s)	142, 464, 682
BmrFI	CCNGG	2 cut(s)	251, 716
BmsI	GCATC	1 cut(s)	225
BpuMI	CCSGG	2 cut(s)	251, 716
BsaAI	YACGTR	2 cut(s)	318, 473
BsaI	GGTCTC	1 cut(s)	552
BsaWI	WCCGGW	2 cut(s)	40, 109
Bsc4I	CCNNNNNNNGG	4 cut(s)	382, 543, 648, 677
Bse118I	RCCGGY	2 cut(s)	65, 683
Bse1I	ACTGG	1 cut(s)	37
BseLI	CCNNNNNNNGG	4 cut(s)	382, 543, 648, 677
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	72, 323
BseSI	GKGCMC	1 cut(s)	144
BseYI	CCCAGC	2 cut(s)	129, 137
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	649
BshFI	GGCC	4 cut(s)	142, 272, 314, 386
BsiEI	CGRYCG	1 cut(s)	649
BsiHKCI	CYCGRG	2 cut(s)	422, 549
BsiSI	CCGG	6 cut(s)	41, 66, 110, 251, 684, 715
BslFI	GGGAC	5 cut(s)	44, 265, 335, 426, 694
BslI	CCNNNNNNNGG	4 cut(s)	382, 543, 648, 677
BsmAI	GTCTC	1 cut(s)	552
BsmFI	GGGAC	5 cut(s)	44, 265, 335, 426, 694
BsnI	GGCC	4 cut(s)	142, 272, 314, 386
Bso31I	GGTCTC	1 cut(s)	552
BsoBI	CYCGRG	2 cut(s)	422, 549
Bsp120I	GGGCCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	74, 646
BspACI	CCGC	4 cut(s)	78, 135, 166, 494
BspANI	GGCC	4 cut(s)	142, 272, 314, 386
BspCNI	CTCAG	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	142, 464, 682
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	552
BsrBI	CCGCTC	2 cut(s)	80, 494
BsrFI	RCCGGY	2 cut(s)	65, 683
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	2 cut(s)	65, 683
BssMI	GATC	2 cut(s)	74, 646
Bst4CI	ACNGT	3 cut(s)	28, 277, 401
BstBAI	YACGTR	2 cut(s)	318, 473
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	359
BstEII	GGTNACC	2 cut(s)	401, 637
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	77, 649
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	2 cut(s)	74, 646
BstMCI	CGRYCG	1 cut(s)	649
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 148, 194, 235
BstPI	GGTNACC	2 cut(s)	401, 637
BstSCI	CCNGG	2 cut(s)	249, 714
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	137
BsuRI	GGCC	4 cut(s)	142, 272, 314, 386
BtgZI	GCGATG	1 cut(s)	528
BtrI	CACGTC	2 cut(s)	379, 520
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr10I	RCCGGY	2 cut(s)	65, 683
Cfr13I	GGNCC	3 cut(s)	140, 141, 681
CseI	GACGC	2 cut(s)	157, 428
CviAII	CATG	1 cut(s)	481
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	2 cut(s)	76, 648
DpnII	GATC	2 cut(s)	74, 646
DrdI	GACNNNNNNGTC	1 cut(s)	700
DriI	GACNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	700
EaeI	YGGCCR	2 cut(s)	270, 312
Eam1105I	GACNNNNNGTC	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	681
Eco72I	CACGTG	1 cut(s)	318
Eco88I	CYCGRG	2 cut(s)	422, 549
Eco91I	GGTNACC	2 cut(s)	401, 637
EcoO65I	GGTNACC	2 cut(s)	401, 637
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	484
FaiI	YATR	4 cut(s)	459, 476, 482, 610
FaqI	GGGAC	5 cut(s)	44, 265, 335, 426, 694
FatI	CATG	1 cut(s)	480
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	396
FriOI	GRGCYC	1 cut(s)	144
GsaI	CCCAGC	2 cut(s)	133, 141
HaeIII	GGCC	4 cut(s)	142, 272, 314, 386
HapII	CCGG	6 cut(s)	41, 66, 110, 251, 684, 715
HgaI	GACGC	2 cut(s)	157, 428
Hin1II	CATG	1 cut(s)	484
HincII	GTYRAC	2 cut(s)	309, 693
HindII	GTYRAC	2 cut(s)	309, 693
HinfI	GANTC	6 cut(s)	180, 266, 295, 330, 363, 570
HpaI	GTTAAC	1 cut(s)	309
HpaII	CCGG	6 cut(s)	41, 66, 110, 251, 684, 715
HphI	GGTGA	5 cut(s)	244, 413, 508, 571, 631
Hpy166II	GTNNAC	6 cut(s)	309, 397, 454, 605, 693, 721
Hpy188I	TCNGA	6 cut(s)	304, 329, 362, 491, 538, 672
Hpy188III	TCNNGA	3 cut(s)	172, 220, 424
Hpy8I	GTNNAC	6 cut(s)	309, 397, 454, 605, 693, 721
Hpy99I	CGWCG	2 cut(s)	383, 542
HpyAV	CCTTC	4 cut(s)	103, 169, 226, 454
HpyCH4III	ACNGT	3 cut(s)	28, 277, 401
HpyCH4IV	ACGT	6 cut(s)	291, 317, 378, 472, 519, 689
HpyCH4V	TGCA	2 cut(s)	197, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 148, 194, 235
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	6 cut(s)	291, 317, 378, 472, 519, 689
Hsp92II	CATG	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	74, 646
LmnI	GCTCC	3 cut(s)	85, 305, 491
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	6 cut(s)	291, 317, 378, 472, 519, 689
MaeIII	GTNAC	5 cut(s)	28, 292, 401, 559, 637
MalI	GATC	2 cut(s)	76, 648
MbiI	CCGCTC	2 cut(s)	80, 494
MboI	GATC	2 cut(s)	74, 646
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	210, 223
MlyI	GAGTC	3 cut(s)	289, 324, 579
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	7 cut(s)	93, 166, 344, 376, 397, 585, 699
MseI	TTAA	3 cut(s)	209, 308, 597
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	6 cut(s)	41, 66, 110, 251, 684, 715
MspR9I	CCNGG	2 cut(s)	251, 716
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	4 cut(s)	139, 148, 194, 235
NciI	CCSGG	2 cut(s)	251, 716
NdeII	GATC	2 cut(s)	74, 646
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	3 cut(s)	142, 464, 682
NmuCI	GTSAC	5 cut(s)	28, 292, 401, 559, 637
PaqCI	CACCTGC	1 cut(s)	650
PceI	AGGCCT	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	3 cut(s)	378, 516, 701
PfeI	GAWTC	3 cut(s)	180, 266, 363
PflFI	GACNNNGTC	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	249
Ple19I	CGATCG	1 cut(s)	649
PleI	GAGTC	3 cut(s)	289, 324, 578
PmaCI	CACGTG	1 cut(s)	318
PmlI	CACGTG	1 cut(s)	318
PpsI	GAGTC	3 cut(s)	289, 324, 578
Ppu21I	YACGTR	2 cut(s)	318, 473
PspCI	CACGTG	1 cut(s)	318
PspEI	GGTNACC	2 cut(s)	401, 637
PspFI	CCCAGC	2 cut(s)	129, 137
PspN4I	GGNNCC	3 cut(s)	142, 464, 682
PspOMI	GGGCCC	1 cut(s)	140
PspPI	GGNCC	3 cut(s)	140, 141, 681
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	377
PvuI	CGATCG	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	209, 308, 597
Sau3AI	GATC	2 cut(s)	74, 646
Sau96I	GGNCC	3 cut(s)	140, 141, 681
SchI	GAGTC	3 cut(s)	289, 324, 579
ScrFI	CCNGG	2 cut(s)	251, 716
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	681
Sse9I	AATT	2 cut(s)	210, 223
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	4 cut(s)	78, 135, 166, 494
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	249, 714
TaaI	ACNGT	3 cut(s)	28, 277, 401
TaiI	ACGT	6 cut(s)	294, 320, 381, 475, 522, 692
TaqI	TCGA	6 cut(s)	264, 381, 389, 617, 654, 704
TasI	AATT	2 cut(s)	210, 223
TfiI	GAWTC	3 cut(s)	180, 266, 363
Tru1I	TTAA	3 cut(s)	209, 308, 597
Tru9I	TTAA	3 cut(s)	209, 308, 597
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	5 cut(s)	28, 292, 401, 559, 637
Tsp45I	GTSAC	5 cut(s)	28, 292, 401, 559, 637
TspDTI	ATGAA	2 cut(s)	497, 543
TspRI	CASTG	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	681
XmiI	GTMKAC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.