Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

20325510 .. 20326349

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25004.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGACATATTTACCTTCAACAATGGCTACTCCGGACCGCCCCAACGAACCCCCGACCACCCTCGGACAGAGAATCTGCACCTCAATTTGCCTCTTTATTCTATTAACAGTCGTTTTTGGATTGATTGGTTGGCTAATCTATACGGGGAACATAAAGCCTTCATCCATACATTTCGAGGTCGAATCCGCCACCGTCTCACAACTCATCACAGAAGGCAGCTCCTTGAGCGCCACGTGGGACATTACTCTCCTCGTCGGTAACCCTAACCGCAAATACAAAATGTGCTTCGACCACGTCCAGGCAGGGGTTCGCTACCACTACGTCGGTGACATCGTAATCGAGCTAGGGAGTACGCCTACATTGCCAATTCACTTTGCTTTGAAACGGATGAACCAAACACACGTACCTCTTGGTTTAAAGATAGGAGTGGAGAGGCTGTGGATCGGCGATGCCGTGGCACAACAAATCTCCAACGACAGGTCTCGCGGGTCGGTGACGTTTGCTGTTACAGTGGACGCTGTTGTGAGGTTTAAGGCTGTGCTAGCGCCTGTAGATGAGTATCGGCTTAGGTTTACCTGCGATCAGGTAGCTTTTGCGTTTTCCGGGAATAATGGTACCGGCATAATGACGAGTCAGCTTTCGTGCTCAGTGTTGAACACAGAATCTAACACAGAATCTGAATCTTGGGATTGGCTCGTGTTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

236

Amino Acids

25.93

Weight (kDa)

5.93

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	584
Acc65I	GGTACC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	614
AccII	CGCG	1 cut(s)	486
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	4 cut(s)	37, 186, 268, 486
AclWI	GGATC	1 cut(s)	449
AcvI	CACGTG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	352, 405, 616
AfiI	CCNNNNNNNGG	3 cut(s)	298, 304, 477
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	18, 382, 655
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	4 cut(s)	219, 343, 590, 637
AluI	AGCT	4 cut(s)	219, 343, 590, 637
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	2 cut(s)	199, 486
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	677
Aor13HI	TCCGGA	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	614
AspLEI	GCGC	2 cut(s)	230, 547
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	338, 505
AsuNHI	GCTAGC	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	34
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BanI	GGYRCC	1 cut(s)	614
BauI	CACGAG	1 cut(s)	695
BbrPI	CACGTG	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	2 cut(s)	199, 486
BfaI	CTAG	2 cut(s)	344, 542
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	2 cut(s)	231, 548
BfuAI	ACCTGC	1 cut(s)	584
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	299, 604
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	299, 604
BmsI	GCATC	1 cut(s)	439
BmtI	GCTAGC	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	604
BsaAI	YACGTR	2 cut(s)	234, 403
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	61, 453
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 304, 477
Bse118I	RCCGGY	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	61, 453
BseGI	GGATG	2 cut(s)	161, 393
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	298, 304, 477
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	660
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	486
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	647
BsiSI	CCGG	3 cut(s)	32, 603, 618
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	298, 304, 477
BsmAI	GTCTC	2 cut(s)	199, 486
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	441, 580
BspACI	CCGC	4 cut(s)	37, 186, 268, 486
BspCNI	CTCAG	1 cut(s)	659
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	584
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	617
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	2 cut(s)	61, 453
BssMI	GATC	2 cut(s)	441, 580
BssSI	CACGAG	1 cut(s)	695
Bst2BI	CACGAG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	109, 193, 511
BstBAI	YACGTR	2 cut(s)	234, 403
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	566, 646
BstDSI	CCRYGG	1 cut(s)	453
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	161, 393
BstFNI	CGCG	1 cut(s)	486
BstH2I	RGCGCY	2 cut(s)	231, 548
BstHHI	GCGC	2 cut(s)	230, 547
BstKTI	GATC	2 cut(s)	444, 583
BstMAI	GTCTC	2 cut(s)	199, 486
BstMBI	GATC	2 cut(s)	441, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 361, 542
BstNI	CCWGG	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	297, 602
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	453
BtgZI	GCGATG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	161, 393
BtsIMutI	CAGTG	2 cut(s)	516, 654
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	2 cut(s)	230, 547
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	34
CpoI	CGGWCCG	1 cut(s)	34
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	351, 404, 615
CspI	CGGWCCG	1 cut(s)	34
CviQI	GTAC	3 cut(s)	351, 404, 615
DdeI	CTNAG	2 cut(s)	566, 646
DpnI	GATC	2 cut(s)	443, 582
DpnII	GATC	2 cut(s)	441, 580
DraI	TTTAAA	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	199
FaiI	YATR	6 cut(s)	7, 141, 152, 167, 623, 706
FaqI	GGGAC	1 cut(s)	251
FauI	CCCGC	1 cut(s)	479
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	2 cut(s)	148, 400
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	2 cut(s)	344, 542
GlaI	GCGC	2 cut(s)	229, 546
GluI	GCNGC	1 cut(s)	217
HaeII	RGCGCY	2 cut(s)	231, 548
HapII	CCGG	3 cut(s)	32, 603, 618
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	2 cut(s)	230, 547
Hin6I	GCGC	2 cut(s)	228, 545
HinP1I	GCGC	2 cut(s)	228, 545
HinfI	GANTC	6 cut(s)	72, 182, 631, 662, 674, 680
HpaII	CCGG	3 cut(s)	32, 603, 618
HphI	GGTGA	2 cut(s)	338, 505
Hpy166II	GTNNAC	2 cut(s)	514, 573
Hpy188I	TCNGA	2 cut(s)	65, 679
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	2 cut(s)	514, 573
Hpy99I	CGWCG	2 cut(s)	257, 326
HpyAV	CCTTC	3 cut(s)	24, 168, 206
HpyCH4III	ACNGT	3 cut(s)	109, 193, 511
HpyCH4IV	ACGT	5 cut(s)	233, 294, 321, 402, 497
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 361, 542
HpyF3I	CTNAG	2 cut(s)	566, 646
HpySE526I	ACGT	5 cut(s)	233, 294, 321, 402, 497
HspAI	GCGC	2 cut(s)	228, 545
Kpn2I	TCCGGA	1 cut(s)	31
KpnI	GGTACC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	441, 580
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	344, 542
MaeII	ACGT	5 cut(s)	233, 294, 321, 402, 497
MaeIII	GTNAC	4 cut(s)	257, 326, 493, 505
MalI	GATC	2 cut(s)	443, 582
MboI	GATC	2 cut(s)	441, 580
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	2 cut(s)	84, 366
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	71, 91, 101, 169, 260, 417, 426, 519
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	3 cut(s)	104, 416, 531
MspI	CCGG	3 cut(s)	32, 603, 618
MspR9I	CCNGG	2 cut(s)	299, 604
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	225, 361, 542
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	2 cut(s)	441, 580
NheI	GCTAGC	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	2 cut(s)	326, 493
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 450
PfeI	GAWTC	5 cut(s)	72, 182, 662, 674, 680
PflFI	GACNNNGTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	639
PmaCI	CACGTG	1 cut(s)	234
PmlI	CACGTG	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	639
Ppu21I	YACGTR	2 cut(s)	234, 403
PsiI	TTATAA	1 cut(s)	706
Psp6I	CCWGG	1 cut(s)	297
PspCI	CACGTG	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	677
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	352, 405, 616
RsaNI	GTAC	3 cut(s)	351, 404, 615
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	104, 416, 531
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	441, 580
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	2 cut(s)	299, 604
SduI	GDGCHC	1 cut(s)	647
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	84, 366
SsiI	CCGC	4 cut(s)	37, 186, 268, 486
SspMI	CTAG	2 cut(s)	344, 542
StyD4I	CCNGG	2 cut(s)	297, 602
TaaI	ACNGT	3 cut(s)	109, 193, 511
TaiI	ACGT	5 cut(s)	236, 297, 324, 405, 500
TaqI	TCGA	4 cut(s)	174, 180, 288, 339
TasI	AATT	2 cut(s)	84, 366
TfiI	GAWTC	5 cut(s)	72, 182, 662, 674, 680
Tru1I	TTAA	3 cut(s)	104, 416, 531
Tru9I	TTAA	3 cut(s)	104, 416, 531
TscAI	CASTG	2 cut(s)	516, 654
TseFI	GTSAC	2 cut(s)	326, 493
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	2 cut(s)	326, 493
TspDTI	ATGAA	2 cut(s)	150, 404
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	516, 654
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	34
XspI	CTAG	2 cut(s)	344, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.