Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

11536085 .. 11538598

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G142400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACCGACCCCACCCGACCCGTCACGGGCTACCCGGCCCCGCCCTACGCCCAGCCCAACGGCGGCTACCCATACTCTGCCAACCCCACCCAAACCCAACCCCGAGGCCCCTACTCCAACGCCTACAACCCACGAGCCGCCTTCATCCGTCGCTTCGTCGGCGCCATGATCGCCCTCTTCGTCATTGTCGGCTGCATCCTCCTCGTCGTCTGGCTCATCCTCCGCCCCAAGGTCCCCGACTTCCGAGTCGACTCGCTTTCTCTCTCCAACTTCAACGTCTCCTCCGCCTCGCAGTCCGTGACCGGCACGTGGTCCGTCGGCTTCATGGTCTACAACCCCAACAAGAAGCTCAGTATACGATACGACGACGTCGAGTCCTCTATCTACTACGGCCCCGGCTTCATTTCGGGGACTCGGGTTCCACCGTTCGCTCAGGGGACTAAGGATCGGACTTCTGTCAACGCGACTTTCTCGGCGGCGAATTCGTTCGTTGGCGCTTCGGTGGCGCGCGGCATCGACGAGGCCAGGGCACGTGGGAGCATGAGCTTCAACGTGAAGCTTTTGGCTAGGGTTGAGTTTCGGAGAGGTTGGTGGAGGCTGAGGCGGCGGCTCTTGAGGGTTTTGTGCAGTGGCGTGGCGGTTTCTCTTTCGTCGAAAGGCGGATTGAGTAGTTTGGCCGGCGGGTCAAGAGATTGCCAGGTTGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

237

Amino Acids

25.69

Weight (kDa)

10.53

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AatII	GACGTC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	3 cut(s)	249, 330, 355
AccII	CGCG	3 cut(s)	464, 508, 510
AclWI	GGATC	1 cut(s)	453
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	481
AcvI	CACGTG	2 cut(s)	309, 533
AcyI	GRCGYC	2 cut(s)	162, 369
AfiI	CCNNNNNNNGG	4 cut(s)	26, 62, 229, 309
AgsI	TTSAA	2 cut(s)	274, 550
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	524, 696
AluBI	AGCT	3 cut(s)	349, 546, 559
AluI	AGCT	3 cut(s)	349, 546, 559
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	453
Ama87I	CYCGRG	2 cut(s)	102, 414
AoxI	GGCC	5 cut(s)	36, 106, 391, 522, 675
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	4 cut(s)	164, 497, 508, 510
AspS9I	GGNCC	5 cut(s)	37, 107, 232, 312, 392
AsuC2I	CCSGG	2 cut(s)	35, 396
AvaI	CYCGRG	2 cut(s)	102, 414
AvaII	GGWCC	2 cut(s)	232, 312
BaeGI	GKGCMC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	132
BbrPI	CACGTG	2 cut(s)	309, 533
BbvCI	CCTCAGC	1 cut(s)	599
BbvI	GCAGC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	76, 406
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	2 cut(s)	526, 698
BcnI	CCSGG	2 cut(s)	35, 396
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	567
BfoI	RGCGCY	2 cut(s)	165, 498
BisI	GCNGC	7 cut(s)	64, 138, 193, 477, 511, 605, 608
BlsI	GCNGC	7 cut(s)	65, 139, 194, 478, 512, 606, 609
Bme1390I	CCNGG	4 cut(s)	35, 396, 526, 698
Bme18I	GGWCC	2 cut(s)	232, 312
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	102, 414
BmgT120I	GGNCC	5 cut(s)	37, 107, 232, 312, 392
BmiI	GGNNCC	6 cut(s)	39, 109, 163, 234, 394, 420
BmrFI	CCNGG	4 cut(s)	35, 396, 526, 698
BmsI	GCATC	2 cut(s)	204, 522
BoxI	GACNNNNGTC	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	432, 599
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	2 cut(s)	35, 396
BsaAI	YACGTR	2 cut(s)	309, 533
BsaHI	GRCGYC	2 cut(s)	162, 369
BsaJI	CCNNGG	4 cut(s)	103, 228, 394, 525
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 62, 229, 309
Bse118I	RCCGGY	2 cut(s)	302, 677
BseBI	CCWGG	2 cut(s)	526, 698
BseDI	CCNNGG	4 cut(s)	103, 228, 394, 525
BseGI	GGATG	3 cut(s)	144, 195, 216
BseLI	CCNNNNNNNGG	4 cut(s)	26, 62, 229, 309
BseMII	CTCAG	3 cut(s)	364, 446, 590
BsePI	GCGCGC	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	191, 271
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	646
Bsh1236I	CGCG	3 cut(s)	464, 508, 510
BshFI	GGCC	5 cut(s)	38, 108, 393, 524, 677
BshNI	GGYRCC	1 cut(s)	161
BsiHKCI	CYCGRG	2 cut(s)	102, 414
BsiSI	CCGG	4 cut(s)	35, 303, 396, 678
BslFI	GGGAC	3 cut(s)	218, 424, 451
BslI	CCNNNNNNNGG	4 cut(s)	26, 62, 229, 309
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	3 cut(s)	218, 424, 451
BsnI	GGCC	5 cut(s)	38, 108, 393, 524, 677
BsoBI	CYCGRG	2 cut(s)	102, 414
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	168, 445
BspANI	GGCC	5 cut(s)	38, 108, 393, 524, 677
BspCNI	CTCAG	3 cut(s)	363, 445, 591
BspFNI	CGCG	3 cut(s)	464, 508, 510
BspLI	GGNNCC	6 cut(s)	39, 109, 163, 234, 394, 420
BspPI	GGATC	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	2 cut(s)	302, 677
BssAI	RCCGGY	2 cut(s)	302, 677
BssECI	CCNNGG	4 cut(s)	103, 228, 394, 525
BssHII	GCGCGC	1 cut(s)	506
BssMI	GATC	2 cut(s)	168, 445
BssNAI	GTATAC	1 cut(s)	356
BssNI	GRCGYC	2 cut(s)	162, 369
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	228
Bst1107I	GTATAC	1 cut(s)	356
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	526, 698
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	162, 369
BstBAI	YACGTR	2 cut(s)	309, 533
BstC8I	GCNNGC	2 cut(s)	508, 679
BstDEI	CTNAG	4 cut(s)	350, 432, 441, 599
BstF5I	GGATG	3 cut(s)	144, 195, 216
BstFNI	CGCG	3 cut(s)	464, 508, 510
BstH2I	RGCGCY	2 cut(s)	165, 498
BstHHI	GCGC	4 cut(s)	164, 497, 508, 510
BstKTI	GATC	2 cut(s)	171, 448
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	168, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 170, 503, 604
BstNI	CCWGG	2 cut(s)	526, 698
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSCI	CCNGG	4 cut(s)	33, 394, 524, 696
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	3 cut(s)	464, 508, 510
BstV1I	GCAGC	1 cut(s)	179
BstZ17I	GTATAC	1 cut(s)	356
BsuRI	GGCC	5 cut(s)	38, 108, 393, 524, 677
BtsCI	GGATG	3 cut(s)	144, 195, 216
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	508, 679
CfoI	GCGC	4 cut(s)	164, 497, 508, 510
Cfr10I	RCCGGY	2 cut(s)	302, 677
Cfr13I	GGNCC	5 cut(s)	37, 107, 232, 312, 392
CviAII	CATG	3 cut(s)	166, 325, 541
DdeI	CTNAG	4 cut(s)	350, 432, 441, 599
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	2 cut(s)	170, 447
DpnII	GATC	2 cut(s)	168, 445
DrdI	GACNNNNNNGTC	1 cut(s)	245
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	3 cut(s)	212, 274, 675
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	232, 312
Eco72I	CACGTG	2 cut(s)	309, 533
Eco88I	CYCGRG	2 cut(s)	102, 414
EcoO109I	RGGNCCY	2 cut(s)	107, 232
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	524, 696
EcoT14I	CCWWGG	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	3 cut(s)	169, 328, 544
FaiI	YATR	5 cut(s)	73, 167, 326, 356, 542
FaqI	GGGAC	3 cut(s)	218, 424, 451
FatI	CATG	3 cut(s)	165, 324, 540
FauI	CCCGC	2 cut(s)	48, 674
FblI	GTMKAC	3 cut(s)	249, 330, 355
Fnu4HI	GCNGC	7 cut(s)	64, 138, 193, 477, 511, 605, 608
FokI	GGATG	3 cut(s)	131, 182, 203
Fsp4HI	GCNGC	7 cut(s)	64, 138, 193, 477, 511, 605, 608
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	4 cut(s)	163, 496, 507, 509
GluI	GCNGC	7 cut(s)	64, 138, 193, 477, 511, 605, 608
GsaI	CCCAGC	1 cut(s)	55
HaeII	RGCGCY	2 cut(s)	165, 498
HaeIII	GGCC	5 cut(s)	38, 108, 393, 524, 677
HapII	CCGG	4 cut(s)	35, 303, 396, 678
HhaI	GCGC	4 cut(s)	164, 497, 508, 510
Hin1I	GRCGYC	2 cut(s)	162, 369
Hin1II	CATG	3 cut(s)	169, 328, 544
Hin6I	GCGC	4 cut(s)	162, 495, 506, 508
HinP1I	GCGC	4 cut(s)	162, 495, 506, 508
HincII	GTYRAC	2 cut(s)	250, 460
HindII	GTYRAC	2 cut(s)	250, 460
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	4 cut(s)	246, 251, 374, 412
HpaII	CCGG	4 cut(s)	35, 303, 396, 678
Hpy166II	GTNNAC	4 cut(s)	250, 331, 356, 460
Hpy188I	TCNGA	3 cut(s)	245, 450, 582
Hpy188III	TCNNGA	2 cut(s)	613, 687
Hpy8I	GTNNAC	4 cut(s)	250, 331, 356, 460
Hpy99I	CGWCG	9 cut(s)	153, 161, 209, 320, 368, 371, 374, 521, 655
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	5 cut(s)	276, 308, 369, 532, 552
HpyCH4V	TGCA	2 cut(s)	195, 627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 170, 503, 604
HpyF3I	CTNAG	4 cut(s)	350, 432, 441, 599
HpySE526I	ACGT	5 cut(s)	276, 308, 369, 532, 552
Hsp92I	GRCGYC	2 cut(s)	162, 369
Hsp92II	CATG	3 cut(s)	169, 328, 544
HspAI	GCGC	4 cut(s)	162, 495, 506, 508
KasI	GGCGCC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
Kzo9I	GATC	2 cut(s)	168, 445
LmnI	GCTCC	1 cut(s)	537
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	2 cut(s)	204, 522
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	5 cut(s)	276, 308, 369, 532, 552
MaeIII	GTNAC	2 cut(s)	22, 298
MalI	GATC	2 cut(s)	170, 447
MboI	GATC	2 cut(s)	168, 445
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	1 cut(s)	481
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	4 cut(s)	245, 255, 383, 406
MmeI	TCCRAC	2 cut(s)	141, 291
MroNI	GCCGGC	1 cut(s)	677
MroXI	GAANNNNTTC	1 cut(s)	485
MspI	CCGG	4 cut(s)	35, 303, 396, 678
MspR9I	CCNGG	4 cut(s)	35, 396, 526, 698
MvaI	CCWGG	2 cut(s)	526, 698
MvnI	CGCG	3 cut(s)	464, 508, 510
MwoI	GCNNNNNNNGC	4 cut(s)	159, 170, 503, 604
NaeI	GCCGGC	1 cut(s)	679
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	2 cut(s)	35, 396
NdeII	GATC	2 cut(s)	168, 445
NgoMIV	GCCGGC	1 cut(s)	677
NlaIII	CATG	3 cut(s)	169, 328, 544
NlaIV	GGNNCC	6 cut(s)	39, 109, 163, 234, 394, 420
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	22, 298
PauI	GCGCGC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 369
PdiI	GCCGGC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	7 cut(s)	65, 139, 194, 478, 512, 606, 609
PleI	GAGTC	4 cut(s)	245, 254, 382, 406
PluTI	GGCGCC	1 cut(s)	165
PmaCI	CACGTG	2 cut(s)	309, 533
PmlI	CACGTG	2 cut(s)	309, 533
PpsI	GAGTC	4 cut(s)	245, 254, 382, 406
Ppu21I	YACGTR	2 cut(s)	309, 533
PpuMI	RGGWCCY	1 cut(s)	232
PshAI	GACNNNNGTC	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	524, 696
PspCI	CACGTG	2 cut(s)	309, 533
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	2 cut(s)	524, 696
PspN4I	GGNNCC	6 cut(s)	39, 109, 163, 234, 394, 420
PspPI	GGNCC	5 cut(s)	37, 107, 232, 312, 392
PspPPI	RGGWCCY	1 cut(s)	232
PsyI	GACNNNGTC	1 cut(s)	368
PteI	GCGCGC	1 cut(s)	506
SalI	GTCGAC	1 cut(s)	248
SatI	GCNGC	7 cut(s)	64, 138, 193, 477, 511, 605, 608
Sau3AI	GATC	2 cut(s)	168, 445
Sau96I	GGNCC	5 cut(s)	37, 107, 232, 312, 392
SchI	GAGTC	4 cut(s)	245, 255, 383, 406
ScrFI	CCNGG	4 cut(s)	35, 396, 526, 698
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	204, 522
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	232, 312
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	1 cut(s)	481
SspDI	GGCGCC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	4 cut(s)	33, 394, 524, 696
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	5 cut(s)	279, 311, 372, 535, 555
TaqI	TCGA	4 cut(s)	249, 372, 516, 653
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	481
TauI	GCSGC	6 cut(s)	66, 140, 479, 513, 607, 610
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	2 cut(s)	22, 298
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	2 cut(s)	22, 298
TspDTI	ATGAA	3 cut(s)	133, 313, 391
TspGWI	ACGGA	3 cut(s)	137, 286, 304
TspRI	CASTG	1 cut(s)	634
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	232, 312
XapI	RAATTY	1 cut(s)	481
XmiI	GTMKAC	3 cut(s)	249, 330, 355
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	567
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.