Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Forward (+)

28376082 .. 28376612

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTCTATTCGATAACCATGGAGAGTCCAGAACTTCCAGAGTTCAAGATCGAATCAGCCACCGTCTCCCAACTCGATACGGAAGGCTCCTTGACCGCCACGTGGGACATCACTTTCCTCGCCAGTAACCCTAACCGCAAATACAAAATGTACTACGACATCGTCCTTGCATCGGTCCTCTACCAGTACGGTAACACCGTTATCAGGCTAGGGCCAACGCCGCGTTTGCATCCCTTGATTCCCTTCTCCTTGAAAGAGAGGAACCACACACGTGTCCATTTCAAGCTAGGAGTGGTGAGGGAGTGGTTCGGCGATGGCGTGGCACAACAAATCTCCTACGACAGGTCTCGCGGATTGGTGAGATTTGGGGTTAGAATGGCCGCTGCGGTGAGGTTCAAGGCTAGGCTACGGCCTTCGGAACACTATGTGCTGCTGGTCTCCTGCGATCGGGTCGATTTCGGGTTTTCTAGGAATAATGAGACAGGCGTATTGACGGATCAGTCTGGAGCGTGCTCTGTTGAATCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

176

Amino Acids

20.06

Weight (kDa)

9.17

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	499
AccII	CGCG	2 cut(s)	223, 351
AciI	CCGC	6 cut(s)	96, 136, 221, 351, 381, 386
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	378
AcvI	CACGTG	2 cut(s)	102, 272
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	2 cut(s)	152, 188
AfiI	CCNNNNNNNGG	5 cut(s)	102, 172, 204, 342, 447
AflIII	ACRYGT	2 cut(s)	269, 271
AgsI	TTSAA	5 cut(s)	46, 253, 283, 397, 521
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	4 cut(s)	70, 351, 442, 473
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	3 cut(s)	212, 378, 410
ApeKI	GCWGC	2 cut(s)	383, 430
AspS9I	GGNCC	2 cut(s)	175, 212
AsuHPI	GGTGA	3 cut(s)	307, 370, 400
AvaII	GGWCC	1 cut(s)	175
BbrPI	CACGTG	2 cut(s)	102, 272
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	370, 417
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	425
BcoDI	GTCTC	4 cut(s)	70, 351, 442, 473
BfaI	CTAG	5 cut(s)	209, 287, 402, 468, 525
BisI	GCNGC	4 cut(s)	221, 381, 384, 431
BlsI	GCNGC	4 cut(s)	222, 382, 385, 432
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	175, 212
BmiI	GGNNCC	2 cut(s)	88, 263
BmsI	GCATC	2 cut(s)	179, 238
BpmI	CTGGAG	1 cut(s)	525
BsaAI	YACGTR	2 cut(s)	102, 272
BsaI	GGTCTC	2 cut(s)	351, 442
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 172, 204, 342, 447
Bse1I	ACTGG	2 cut(s)	123, 184
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	5 cut(s)	102, 172, 204, 342, 447
BseNI	ACTGG	2 cut(s)	123, 184
BseXI	GCAGC	2 cut(s)	370, 417
Bsh1236I	CGCG	2 cut(s)	223, 351
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	214, 380, 412
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	5 cut(s)	102, 172, 204, 342, 447
BsmAI	GTCTC	4 cut(s)	70, 351, 442, 473
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	214, 380, 412
Bso31I	GGTCTC	2 cut(s)	351, 442
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	48, 445, 496
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	6 cut(s)	96, 136, 221, 351, 381, 386
BspANI	GGCC	3 cut(s)	214, 380, 412
BspFNI	CGCG	2 cut(s)	223, 351
BspLI	GGNNCC	2 cut(s)	88, 263
BspPI	GGATC	1 cut(s)	504
BspTNI	GGTCTC	2 cut(s)	351, 442
BsrI	ACTGG	2 cut(s)	123, 184
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	48, 445, 496
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	64, 191, 199
BstBAI	YACGTR	2 cut(s)	102, 272
BstC8I	GCNNGC	1 cut(s)	511
BstDSI	CCRYGG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	223, 351
BstKTI	GATC	3 cut(s)	51, 448, 499
BstMAI	GTCTC	4 cut(s)	70, 351, 442, 473
BstMBI	GATC	3 cut(s)	48, 445, 496
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 226
BstUI	CGCG	2 cut(s)	223, 351
BstV1I	GCAGC	2 cut(s)	370, 417
BsuRI	GGCC	3 cut(s)	214, 380, 412
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	511
Cfr13I	GGNCC	2 cut(s)	175, 212
Csp6I	GTAC	2 cut(s)	151, 187
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	9 cut(s)	59, 87, 208, 214, 286, 380, 401, 406, 412
CviKI_1	RGCY	9 cut(s)	59, 87, 208, 214, 286, 380, 401, 406, 412
CviQI	GTAC	2 cut(s)	151, 187
DpnI	GATC	3 cut(s)	50, 447, 498
DpnII	GATC	3 cut(s)	48, 445, 496
DraIII	CACNNNGTG	1 cut(s)	427
DrdI	GACNNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	2 cut(s)	351, 442
Eco47I	GGWCC	1 cut(s)	175
Eco72I	CACGTG	2 cut(s)	102, 272
EcoNI	CCTNNNNNAGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	1 cut(s)	22
FaiI	YATR	2 cut(s)	20, 426
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	221, 381, 384, 431
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	221, 381, 384, 431
FspBI	CTAG	5 cut(s)	209, 287, 402, 468, 525
GluI	GCNGC	4 cut(s)	221, 381, 384, 431
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	214, 380, 412
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	4 cut(s)	25, 53, 238, 521
HphI	GGTGA	3 cut(s)	307, 370, 400
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	4 cut(s)	29, 38, 46, 504
HpyAV	CCTTC	3 cut(s)	77, 253, 423
HpyCH4III	ACNGT	3 cut(s)	64, 191, 199
HpyCH4IV	ACGT	2 cut(s)	101, 271
HpyCH4V	TGCA	2 cut(s)	170, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 226
HpySE526I	ACGT	2 cut(s)	101, 271
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	48, 445, 496
LmnI	GCTCC	2 cut(s)	92, 506
Lsp1109I	GCAGC	2 cut(s)	370, 417
LweI	GCATC	2 cut(s)	179, 238
MaeI	CTAG	5 cut(s)	209, 287, 402, 468, 525
MaeII	ACGT	2 cut(s)	101, 271
MaeIII	GTNAC	2 cut(s)	125, 191
MalI	GATC	3 cut(s)	50, 447, 498
MboI	GATC	3 cut(s)	48, 445, 496
MhlI	GDGCHC	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	128, 188, 252, 291, 384
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	223, 351
MwoI	GCNNNNNNNGC	2 cut(s)	220, 226
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	48, 445, 496
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	88, 263
OliI	CACNNNNGTG	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 315
PfeI	GAWTC	3 cut(s)	53, 238, 521
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	222, 382, 385, 432
Ple19I	CGATCG	1 cut(s)	448
PleI	GAGTC	1 cut(s)	33
PmaCI	CACGTG	2 cut(s)	102, 272
PmlI	CACGTG	2 cut(s)	102, 272
PpsI	GAGTC	1 cut(s)	33
Ppu21I	YACGTR	2 cut(s)	102, 272
PspCI	CACGTG	2 cut(s)	102, 272
PspN4I	GGNNCC	2 cut(s)	88, 263
PspPI	GGNCC	2 cut(s)	175, 212
PsyI	GACNNNGTC	1 cut(s)	161
PvuI	CGATCG	1 cut(s)	448
RsaI	GTAC	2 cut(s)	152, 188
RsaNI	GTAC	2 cut(s)	151, 187
RseI	CAYNNNNRTG	1 cut(s)	270
SatI	GCNGC	4 cut(s)	221, 381, 384, 431
Sau3AI	GATC	3 cut(s)	48, 445, 496
Sau96I	GGNCC	2 cut(s)	175, 212
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	6 cut(s)	104, 274, 288, 347, 395, 530
SfaNI	GCATC	2 cut(s)	179, 238
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	270
SsiI	CCGC	6 cut(s)	96, 136, 221, 351, 381, 386
SspMI	CTAG	5 cut(s)	209, 287, 402, 468, 525
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	64, 191, 199
TaiI	ACGT	2 cut(s)	104, 274
TaqI	TCGA	4 cut(s)	11, 51, 75, 453
TaqII	GACCGA	1 cut(s)	163
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	2 cut(s)	223, 383
TfiI	GAWTC	3 cut(s)	53, 238, 521
TseI	GCWGC	2 cut(s)	383, 430
TspGWI	ACGGA	2 cut(s)	95, 509
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	175
XagI	CCTNNNNNAGG	1 cut(s)	340
XspI	CTAG	5 cut(s)	209, 287, 402, 468, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.