Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000148.1

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

88824 .. 89186

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000148.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaccattgagtacgacgagatcggctcctccgtcttctaccgctctggcttcatttccgagacccaaattcagccgttccggcaggggaagagagtccgcagcgccgtgaacgcgactttctcggcggcgaactcgtttgtcggcgacagagtggcgagtgggatcgacgcggacagggcggcgcatggggcggtgagtttcaatatcaagctgctggctagggttcagtttcggaaaggcgggtggaggctgaggcggaggctgctgagggtgttgtgccgtgacgtgccgcttacgatttcgaataatgggaccaggacgatgaccggcggaggtagacattgcggcgttgctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

120

Amino Acids

13.2

Weight (kDa)

11.4

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	2 cut(s)	116, 173
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	102, 214, 265
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	107, 187
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	28
BbvCI	CCTCAGC	2 cut(s)	254, 269
BbvI	GCAGC	3 cut(s)	114, 201, 252
BceAI	ACGGC	3 cut(s)	61, 92, 267
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	82
BisI	GCNGC	7 cut(s)	103, 129, 183, 215, 266, 293, 349
BlsI	GCNGC	7 cut(s)	104, 130, 184, 216, 267, 294, 350
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	28, 316
BmrFI	CCNGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
Bpu10I	CCTNAGC	2 cut(s)	254, 269
Bpu14I	TTCGAA	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	245, 260
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	114, 201, 252
Bsh1236I	CGCG	2 cut(s)	116, 173
BsiSI	CCGG	2 cut(s)	82, 330
BslFI	GGGAC	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	328
Bso31I	GGTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	21, 165
BspCNI	CTCAG	2 cut(s)	246, 261
BspFNI	CGCG	2 cut(s)	116, 173
BspLI	GGNNCC	2 cut(s)	28, 316
BspPI	GGATC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	2 cut(s)	21, 165
Bst2UI	CCWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	254, 269
BstFNI	CGCG	2 cut(s)	116, 173
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	107, 187
BstKTI	GATC	2 cut(s)	24, 168
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	21, 165
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 113, 179, 191, 265
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstUI	CGCG	2 cut(s)	116, 173
BstV1I	GCAGC	3 cut(s)	114, 201, 252
BstV2I	GAAGAC	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	2 cut(s)	107, 187
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	27, 51, 76, 214, 221, 253, 265
CviKI_1	RGCY	7 cut(s)	27, 51, 76, 214, 221, 253, 265
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	254, 269
DpnI	GATC	2 cut(s)	23, 167
DpnII	GATC	2 cut(s)	21, 165
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	2 cut(s)	274, 348
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	191
FaiI	YATR	1 cut(s)	189
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	187
FauI	CCCGC	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	7 cut(s)	103, 129, 183, 215, 266, 293, 349
Fsp4HI	GCNGC	7 cut(s)	103, 129, 183, 215, 266, 293, 349
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	106, 186
GluI	GCNGC	7 cut(s)	103, 129, 183, 215, 266, 293, 349
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	2 cut(s)	82, 330
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	2 cut(s)	107, 187
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	2 cut(s)	105, 185
HinP1I	GCGC	2 cut(s)	105, 185
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	2 cut(s)	82, 330
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	112, 341
Hpy188I	TCNGA	3 cut(s)	61, 237, 362
Hpy8I	GTNNAC	2 cut(s)	112, 341
Hpy99I	CGWCG	2 cut(s)	20, 173
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 113, 179, 191, 265
HpyF3I	CTNAG	2 cut(s)	254, 269
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	2 cut(s)	105, 185
Kzo9I	GATC	2 cut(s)	21, 165
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	8 cut(s)	33, 71, 95, 163, 203, 304, 331, 343
Lsp1109I	GCAGC	3 cut(s)	114, 201, 252
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	23, 167
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	2 cut(s)	21, 165
MboII	GAAGA	2 cut(s)	28, 103
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	40, 243, 249, 255, 264, 329
MspI	CCGG	2 cut(s)	82, 330
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	2 cut(s)	116, 173
MwoI	GCNNNNNNNGC	5 cut(s)	82, 113, 179, 191, 265
NdeII	GATC	2 cut(s)	21, 165
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	28, 316
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	104, 130, 184, 216, 267, 294, 350
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	28, 316
PspPI	GGNCC	1 cut(s)	315
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SatI	GCNGC	7 cut(s)	103, 129, 183, 215, 266, 293, 349
Sau3AI	GATC	2 cut(s)	21, 165
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	319
SetI	ASST	3 cut(s)	216, 291, 340
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	1 cut(s)	315
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	168, 305
TasI	AATT	1 cut(s)	69
TauI	GCSGC	4 cut(s)	131, 185, 295, 351
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	102, 214, 265
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	340
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.