Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Reverse (-)

20318685 .. 20319324

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25002.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTATTCCGGTCAGATCGGCCGCCATCCCATCCGCGCCTCCCTTTCCCCATCCATCCCTACCGGACCGCCCGTGCACCACCTTCTGCTACTTAATACGATGCCTAGTAATAACCCTAGTTGTAGTTGGAGCCGGCGAAGGCAGCACCATCAGCGCCACGTGGGACATTACTCTCGTCGCCGTTAACCCTAACCGCAAATTCAAAACCTCCTTCGACCTCGTCCATGCAGGGGTCGGCTACTACTACGGTAACACCGTTATCGAGCTAGTGAGTACGCCTAGGTTTCGAAGACACTTTGCTTTGAAAGAGATGAACCAAACACGTTTCGATTTCAAGATAGGAGTGGAGAGGCTGATGATCGGCGATGCCGTGGCACAAAAAATCTCTTACGATAGGTCTCGAGGGTCGGTGAGGTTTGCTGTTACAATGGACATTTTACGGGTGAAGTTTAAGGCTACGCTAGCGCCTACACTAGAAGATCAGCATCGGGTTGGGGTCACCTGTGATCAGGTAGCTTTTGAGTTTTCCGGGAATAATGGTACCGGCGTACAGACGAGTCAGTCTTCGTGCTCTGTTTATTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

197

Amino Acids

21.63

Weight (kDa)

9.06

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	1 cut(s)	38
AciI	CCGC	4 cut(s)	24, 36, 70, 196
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	200
AcvI	CACGTG	1 cut(s)	162
AfaI	GTAC	3 cut(s)	277, 544, 552
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	205, 307, 337
AluBI	AGCT	2 cut(s)	268, 518
AluI	AGCT	2 cut(s)	268, 518
Alw21I	GWGCWC	2 cut(s)	80, 575
Alw26I	GTCTC	1 cut(s)	405
Alw44I	GTGCAC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	542
AspA2I	CCTAGG	1 cut(s)	281
AspLEI	GCGC	3 cut(s)	40, 158, 469
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	3 cut(s)	424, 457, 493
AsuII	TTCGAA	1 cut(s)	289
AsuNHI	GCTAGC	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	67
AvrII	CCTAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	80
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BanI	GGYRCC	1 cut(s)	542
BbrPI	CACGTG	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	298, 558
Bbv12I	GWGCWC	2 cut(s)	80, 575
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	5 cut(s)	35, 40, 60, 64, 158
BceAI	ACGGC	2 cut(s)	167, 356
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	6 cut(s)	107, 119, 269, 282, 464, 476
BfoI	RGCGCY	2 cut(s)	159, 470
BisI	GCNGC	2 cut(s)	24, 145
BlnI	CCTAGG	1 cut(s)	281
BlsI	GCNGC	2 cut(s)	25, 146
Bme1390I	CCNGG	1 cut(s)	532
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	133, 544
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	3 cut(s)	92, 358, 496
BmtI	GCTAGC	1 cut(s)	467
BpiI	GAAGAC	2 cut(s)	298, 558
Bpu14I	TTCGAA	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	532
BsaAI	YACGTR	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	281, 372
BsaWI	WCCGGW	2 cut(s)	10, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	2 cut(s)	134, 545
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	281, 372
BseGI	GGATG	4 cut(s)	27, 32, 52, 56
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	80
BseX3I	CGGCCG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	80, 575
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	5 cut(s)	11, 65, 135, 531, 546
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	80, 575
Bsp143I	GATC	4 cut(s)	17, 360, 481, 508
BspACI	CCGC	4 cut(s)	24, 36, 70, 196
BspANI	GGCC	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	133, 544
BspOI	GCTAGC	1 cut(s)	467
BspT104I	TTCGAA	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	405
BsrFI	RCCGGY	2 cut(s)	134, 545
BssAI	RCCGGY	2 cut(s)	134, 545
BssECI	CCNNGG	2 cut(s)	281, 372
BssMI	GATC	4 cut(s)	17, 360, 481, 508
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	251, 259
BstBAI	YACGTR	1 cut(s)	162
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	136, 465
BstDSI	CCRYGG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	499
BstF5I	GGATG	4 cut(s)	27, 32, 52, 56
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	2 cut(s)	159, 470
BstHHI	GCGC	3 cut(s)	40, 158, 469
BstKTI	GATC	4 cut(s)	20, 363, 484, 511
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	4 cut(s)	17, 360, 481, 508
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 153, 464
BstPI	GGTNACC	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	2 cut(s)	298, 558
BstZI	CGGCCG	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	27, 32, 52, 56
Cac8I	GCNNGC	2 cut(s)	136, 465
CfoI	GCGC	3 cut(s)	40, 158, 469
Cfr10I	RCCGGY	2 cut(s)	134, 545
Cfr13I	GGNCC	1 cut(s)	67
CpoI	CGGWCCG	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	276, 543, 551
CspI	CGGWCCG	1 cut(s)	67
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	8 cut(s)	5, 23, 134, 240, 268, 355, 458, 518
CviKI_1	RGCY	8 cut(s)	5, 23, 134, 240, 268, 355, 458, 518
CviQI	GTAC	3 cut(s)	276, 543, 551
DpnI	GATC	4 cut(s)	19, 362, 483, 510
DpnII	GATC	4 cut(s)	17, 360, 481, 508
DrdI	GACNNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	21
EagI	CGGCCG	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	21
Eco72I	CACGTG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	1 cut(s)	230
FaiI	YATR	1 cut(s)	228
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	24, 145
FokI	GGATG	4 cut(s)	14, 19, 39, 43
Fsp4HI	GCNGC	2 cut(s)	24, 145
FspBI	CTAG	6 cut(s)	107, 119, 269, 282, 464, 476
GlaI	GCGC	3 cut(s)	39, 157, 468
GluI	GCNGC	2 cut(s)	24, 145
HaeII	RGCGCY	2 cut(s)	159, 470
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	5 cut(s)	11, 65, 135, 531, 546
HhaI	GCGC	3 cut(s)	40, 158, 469
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	3 cut(s)	38, 156, 467
HinP1I	GCGC	3 cut(s)	38, 156, 467
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	559
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	5 cut(s)	11, 65, 135, 531, 546
HphI	GGTGA	3 cut(s)	424, 457, 493
Hpy166II	GTNNAC	2 cut(s)	78, 187
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	337, 402
Hpy8I	GTNNAC	2 cut(s)	78, 187
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	94, 134, 223
HpyCH4III	ACNGT	2 cut(s)	251, 259
HpyCH4IV	ACGT	2 cut(s)	161, 325
HpyCH4V	TGCA	2 cut(s)	78, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 153, 464
HpySE526I	ACGT	2 cut(s)	161, 325
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	3 cut(s)	38, 156, 467
KpnI	GGTACC	1 cut(s)	546
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	508
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	17, 360, 481, 508
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	8 cut(s)	24, 78, 148, 216, 497, 517, 544, 559
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	3 cut(s)	92, 358, 496
MaeI	CTAG	6 cut(s)	107, 119, 269, 282, 464, 476
MaeII	ACGT	2 cut(s)	161, 325
MaeIII	GTNAC	3 cut(s)	251, 424, 499
MalI	GATC	4 cut(s)	19, 362, 483, 510
MboI	GATC	4 cut(s)	17, 360, 481, 508
MboII	GAAGA	3 cut(s)	303, 491, 558
MhlI	GDGCHC	2 cut(s)	80, 575
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	51, 220, 230, 345, 398, 408
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	3 cut(s)	95, 186, 453
MspI	CCGG	5 cut(s)	11, 65, 135, 531, 546
MspR9I	CCNGG	1 cut(s)	532
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	144, 153, 464
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	4 cut(s)	17, 360, 481, 508
NgoMIV	GCCGGC	1 cut(s)	134
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	133, 544
NmuCI	GTSAC	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	289
PaeR7I	CTCGAG	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 369
PdiI	GCCGGC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	25, 146
PleI	GAGTC	1 cut(s)	567
PmaCI	CACGTG	1 cut(s)	162
PmlI	CACGTG	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	567
Ppu21I	YACGTR	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	162
PspEI	GGTNACC	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	133, 544
PspPI	GGNCC	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	3 cut(s)	277, 544, 552
RsaNI	GTAC	3 cut(s)	276, 543, 551
Rsr2I	CGGWCCG	1 cut(s)	67
RsrII	CGGWCCG	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	95, 186, 453
SatI	GCNGC	2 cut(s)	24, 145
Sau3AI	GATC	4 cut(s)	17, 360, 481, 508
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	2 cut(s)	80, 575
SfaNI	GCATC	3 cut(s)	92, 358, 496
Sfr274I	CTCGAG	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	289
SinI	GGWCC	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	4 cut(s)	24, 36, 70, 196
SspMI	CTAG	6 cut(s)	107, 119, 269, 282, 464, 476
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	251, 259
TaiI	ACGT	2 cut(s)	164, 328
TaqI	TCGA	5 cut(s)	216, 264, 289, 330, 403
TasI	AATT	1 cut(s)	200
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	95, 186, 453
Tru9I	TTAA	3 cut(s)	95, 186, 453
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	329
Tth111I	GACNNNGTC	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	402
XmaJI	CCTAGG	1 cut(s)	281
XspI	CTAG	6 cut(s)	107, 119, 269, 282, 464, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.