Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001922

Physical Location & Seq

Genomic Coordinates Forward (+)

28708166 .. 28708906

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023823

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTACTACCCAAGACGATAAGACAGTGAATGGCTATCCGGTTCAGCCGGGTCAAGTCCCCACCGGCTACCGATCCGCTTCGCCCTATCCCTTCCCACCACCACCACCGGATTTCCACTACAACCCCCAGCCCACTGGGCCCAATAAGCCCACCTCCGTCGTCCGCGTCCTGATGGGATTCTTCGCCACACGTATAGACATGAAACTCGGAGCGGTGAGTGAATGGGTCGGCGATGACGTGGCGAATGAAATCTCCGACGACAAGTCTCGGGGATTGGTGACTTTTGGAGTCAGGCTGATGACTTCTGTGAGGTTTAAGTGTGGGCTATGGCTGTCGAAATCCCGTTTGTTGCTGGTCACCTGCGATCGGGTCGATTTAGGGCTTTCTCAGAATAATGGGACCGGCACGTTGACGGGTCAGTCGAGGGAGTGCCGGGTTCACTTCTATTCATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

154

Amino Acids

16.87

Weight (kDa)

8.86

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27260
fragaria_vesca	FvH4_2g25002 FvH4_2g25004 FvH4_3g26690 FvH4_3g26690 FvH4_6g20177
malus_domestica	MD00G1129000.v1.1 MD03G1153500.v1.1 MD12G1038800.v1.1 MD14G1037500.v1.1
prunus_persica	Prupe.6G142400_v2.0.a1 Prupe.6G142400_v2.0.a1 Prupe.7G097000_v2.0.a1 Prupe.7G097000_v2.0.a1
pyrus_communis	pycom12g03340 pycom14g03280
rosa_chinensis	RchiOBHm_Chr3g0475711 RchiOBHm_Chr5g0047591 RchiOBHm_Chr5g0048091
rosa_laevigata	RLG00000023822 RLG00000023823 RLG00000034495
rosa_multiflora	Rmu_sc0000148.1_g000014 Rmu_sc0000148.1_g000076 Rmu_sc0000539.1_g000067
rosa_roxburghii	Rroxscaffold_1G00033830 Rroxscaffold_6G00405920 Rroxscaffold_6G00405960
rosa_rugosa	Rorug03G0151000 Rorug05G0236600
rosa_samantha	Rh3AG200400 Rh3BG230900 Rh3BG231000 Rh3BG231100 Rh3CG225500 Rh3CG225700 Rh3DG226000 Rh3DG226200 Rh5AG315700 Rh5BG325900 Rh5CG352400 Rh5DG335200 Rh5DG337100
rosa_wichuraiana	Rw3G018230 Rw3G018250 Rw5G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
AasI	GACNNNNNNGTC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	78, 166, 215
AclWI	GGATC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	191
AhdI	GACNNNNNGTC	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	140
ApaI	GGGCCC	1 cut(s)	144
AspS9I	GGNCC	3 cut(s)	140, 141, 402
AsuC2I	CCSGG	2 cut(s)	51, 437
AsuHPI	GGTGA	3 cut(s)	229, 292, 352
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	144
BccI	CCATC	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	51, 437
BcoDI	GTCTC	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	371
BglI	GCCNNNNNGGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	51, 437
Bme18I	GGWCC	1 cut(s)	402
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	140, 141, 402
BmiI	GGNNCC	2 cut(s)	142, 403
BmrFI	CCNGG	2 cut(s)	51, 437
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	51, 437
BsaAI	YACGTR	1 cut(s)	194
BsaWI	WCCGGW	2 cut(s)	40, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse118I	RCCGGY	2 cut(s)	65, 404
Bse1I	ACTGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	144
BseYI	CCCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	6 cut(s)	41, 50, 66, 110, 405, 436
BslFI	GGGAC	2 cut(s)	44, 415
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	44, 415
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	270
Bsp120I	GGGCCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	74, 367
BspACI	CCGC	3 cut(s)	78, 166, 215
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	142, 403
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	215
BsrFI	RCCGGY	2 cut(s)	65, 404
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	2 cut(s)	65, 404
BssMI	GATC	2 cut(s)	74, 367
Bst4CI	ACNGT	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	77, 370
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	74, 367
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 148
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	49, 435
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	33, 135
BveI	ACCTGC	1 cut(s)	371
Cfr10I	RCCGGY	2 cut(s)	65, 404
Cfr13I	GGNCC	3 cut(s)	140, 141, 402
CseI	GACGC	1 cut(s)	157
CviAII	CATG	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	76, 369
DpnII	GATC	2 cut(s)	74, 367
DrdI	GACNNNNNNGTC	1 cut(s)	421
DriI	GACNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1105I	GACNNNNNGTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	197, 203, 331
FaqI	GGGAC	2 cut(s)	44, 415
FatI	CATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	6 cut(s)	41, 50, 66, 110, 405, 436
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HinfI	GANTC	2 cut(s)	180, 291
HpaII	CCGG	6 cut(s)	41, 50, 66, 110, 405, 436
HphI	GGTGA	3 cut(s)	229, 292, 352
Hpy166II	GTNNAC	2 cut(s)	414, 442
Hpy188I	TCNGA	3 cut(s)	212, 259, 393
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	2 cut(s)	414, 442
Hpy99I	CGWCG	2 cut(s)	164, 263
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	3 cut(s)	193, 240, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 148
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	3 cut(s)	193, 240, 410
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	74, 367
LmnI	GCTCC	1 cut(s)	212
MaeII	ACGT	3 cut(s)	193, 240, 410
MaeIII	GTNAC	2 cut(s)	280, 358
MalI	GATC	2 cut(s)	76, 369
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	2 cut(s)	74, 367
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	166, 306, 420
MseI	TTAA	1 cut(s)	318
MspI	CCGG	6 cut(s)	41, 50, 66, 110, 405, 436
MspR9I	CCNGG	2 cut(s)	51, 437
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	139, 148
NciI	CCSGG	2 cut(s)	51, 437
NdeII	GATC	2 cut(s)	74, 367
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	142, 403
NmuCI	GTSAC	2 cut(s)	280, 358
PaqCI	CACCTGC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 422
PfeI	GAWTC	1 cut(s)	180
Ple19I	CGATCG	1 cut(s)	370
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	194
PspEI	GGTNACC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	142, 403
PspOMI	GGGCCC	1 cut(s)	140
PspPI	GGNCC	3 cut(s)	140, 141, 402
PvuI	CGATCG	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	74, 367
Sau96I	GGNCC	3 cut(s)	140, 141, 402
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	51, 437
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	6 cut(s)	158, 196, 243, 317, 365, 413
SinI	GGWCC	1 cut(s)	402
SsiI	CCGC	3 cut(s)	78, 166, 215
StyD4I	CCNGG	2 cut(s)	49, 435
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	3 cut(s)	196, 243, 413
TaqI	TCGA	3 cut(s)	338, 375, 425
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	33, 142
TseFI	GTSAC	2 cut(s)	280, 358
Tsp45I	GTSAC	2 cut(s)	280, 358
TspDTI	ATGAA	3 cut(s)	218, 264, 441
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	2 cut(s)	33, 142
VpaK11BI	GGWCC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.