Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Reverse (-)

16069386 .. 16070664

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTTCCTCAGCACCACCAGTCCTCCCAATCTCCAATCCCCAAACCGTTCCATCCGCCGCTCCTTCCTCCGTCGAATCTCAACCACCGATCGCTACTCCAGCTTTCCGCAATTTCATCAATCAGATCACCGAAACCGTTAAAAACGGTCTCTCTAAGCGTCGTCCTTGGGCTGAGCTCGCGGATCGTTCCGCATTATCCAAACCTGAGTCGATCTCCGACGCTGCTGTTCGTATCCGCAAGAATTACTCGTATTTCAAGGTTAATTACCTCACCGTCGCTACAGCGATCGTCGGATTCTCTCTCGTCACTCATCCTTTCTCTCTCGTCTTCCTCCTCTGTCTCCTCGCGTCGTGGCTCTTCCTCTACTTGTTCCGTCCCACGGATCAGCCGATCGTTCTATTCGGTCGTACATTCTCCGATCGTGAGACGTTAGGGTGTTTGATTTTGTTCAGTATCTTTGTGATCTTCCTCACCGATGTTGGATCTGTTCTGGTTTCGGCTATGATGATTGGTGTTGCGTTGATCTGTGCTCATGGTGCTTTTAGAGCTCCGGAAGATCTTTTCCTTGATGAGCAAGAGCCTGCTGCTACCGGATTCCTCTCTTTCCTCGGTGGTGCCGCCTCTTCAGCCGCGCCTGCTGTTATCGCCGCTCGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

220

Amino Acids

23.67

Weight (kDa)

7.73

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	50 - 193	1.4e-49	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	617
AccBSI	CCGCTC	2 cut(s)	62, 653
AccII	CGCG	4 cut(s)	182, 350, 635, 657
AccIII	TCCGGA	1 cut(s)	553
AciI	CCGC	9 cut(s)	57, 60, 109, 182, 192, 238, 621, 633, 651
AclWI	GGATC	3 cut(s)	192, 393, 493
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	3 cut(s)	104, 178, 551
AluI	AGCT	3 cut(s)	104, 178, 551
Alw21I	GWGCWC	3 cut(s)	180, 535, 553
Alw26I	GTCTC	3 cut(s)	155, 347, 422
AlwI	GGATC	3 cut(s)	192, 393, 493
Aor13HI	TCCGGA	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	224, 587
AspLEI	GCGC	1 cut(s)	637
AsuHPI	GGTGA	3 cut(s)	121, 265, 466
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	180, 553
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	3 cut(s)	180, 535, 553
BbvCI	CCTCAGC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	211, 574
BccI	CCATC	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	155, 347, 422
BfmI	CTRYAG	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	6 cut(s)	60, 225, 588, 621, 633, 651
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	6 cut(s)	61, 226, 589, 622, 634, 652
BmiI	GGNNCC	1 cut(s)	619
BpiI	GAAGAC	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	167, 381, 610
BsaWI	WCCGGW	2 cut(s)	553, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	553
BseDI	CCNNGG	3 cut(s)	167, 381, 610
BseGI	GGATG	2 cut(s)	53, 313
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	3 cut(s)	24, 165, 198
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	326, 335
BseXI	GCAGC	2 cut(s)	211, 574
Bsh1236I	CGCG	4 cut(s)	182, 350, 635, 657
Bsh1285I	CGRYCG	5 cut(s)	93, 291, 396, 409, 424
BshNI	GGYRCC	1 cut(s)	617
BsiEI	CGRYCG	5 cut(s)	93, 291, 396, 409, 424
BsiHKAI	GWGCWC	3 cut(s)	180, 535, 553
BsiSI	CCGG	2 cut(s)	554, 594
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	3 cut(s)	155, 347, 422
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	363
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	180, 535, 553
Bsp13I	TCCGGA	1 cut(s)	553
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	9 cut(s)	57, 60, 109, 182, 192, 238, 621, 633, 651
BspCNI	CTCAG	3 cut(s)	23, 166, 199
BspEI	TCCGGA	1 cut(s)	553
BspFNI	CGCG	4 cut(s)	182, 350, 635, 657
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	3 cut(s)	192, 393, 493
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	2 cut(s)	62, 653
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	167, 381, 610
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	4 cut(s)	49, 139, 149, 277
Bst6I	CTCTTC	2 cut(s)	365, 631
BstC8I	GCNNGC	4 cut(s)	180, 585, 639, 655
BstDEI	CTNAG	4 cut(s)	10, 156, 174, 207
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	53, 313
BstFNI	CGCG	4 cut(s)	182, 350, 635, 657
BstHHI	GCGC	1 cut(s)	637
BstMAI	GTCTC	3 cut(s)	155, 347, 422
BstMCI	CGRYCG	5 cut(s)	93, 291, 396, 409, 424
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 101, 179, 539, 548, 629, 638, 647
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	4 cut(s)	182, 350, 635, 657
BstV1I	GCAGC	2 cut(s)	211, 574
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	485, 559
BstYI	RGATCY	2 cut(s)	485, 559
BsuI	GTATCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	53, 313
Cac8I	GCNNGC	4 cut(s)	180, 585, 639, 655
CfoI	GCGC	1 cut(s)	637
CseI	GACGC	3 cut(s)	149, 230, 339
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	1 cut(s)	536
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	4 cut(s)	10, 156, 174, 207
Eam1104I	CTCTTC	2 cut(s)	365, 631
EarI	CTCTTC	2 cut(s)	365, 631
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	2 cut(s)	178, 551
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	180, 553
Eco31I	GGTCTC	1 cut(s)	155
Eco53kI	GAGCTC	2 cut(s)	178, 551
Eco57I	CTGAAG	1 cut(s)	612
EcoICRI	GAGCTC	2 cut(s)	178, 551
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	180, 553
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	1 cut(s)	539
FaiI	YATR	2 cut(s)	506, 537
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	1 cut(s)	535
Fnu4HI	GCNGC	6 cut(s)	60, 225, 588, 621, 633, 651
FokI	GGATG	2 cut(s)	40, 300
FriOI	GRGCYC	2 cut(s)	180, 553
Fsp4HI	GCNGC	6 cut(s)	60, 225, 588, 621, 633, 651
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	6 cut(s)	60, 225, 588, 621, 633, 651
GsuI	CTGGAG	1 cut(s)	84
HapII	CCGG	2 cut(s)	554, 594
HgaI	GACGC	3 cut(s)	149, 230, 339
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	1 cut(s)	539
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HinfI	GANTC	4 cut(s)	77, 209, 297, 597
HpaII	CCGG	2 cut(s)	554, 594
HphI	GGTGA	3 cut(s)	121, 265, 466
Hpy188I	TCNGA	4 cut(s)	126, 220, 296, 421
Hpy188III	TCNNGA	2 cut(s)	425, 554
Hpy99I	CGWCG	6 cut(s)	77, 165, 224, 281, 296, 355
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	4 cut(s)	49, 139, 149, 277
HpyCH4IV	ACGT	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 101, 179, 539, 548, 629, 638, 647
HpyF3I	CTNAG	4 cut(s)	10, 156, 174, 207
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	539
HspAI	GCGC	1 cut(s)	635
Kpn2I	TCCGGA	1 cut(s)	553
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	2 cut(s)	67, 556
LpnPI	CCDG	8 cut(s)	33, 114, 219, 479, 567, 597, 607, 651
Lsp1109I	GCAGC	2 cut(s)	211, 574
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	307
MbiI	CCGCTC	2 cut(s)	62, 653
MboII	GAAGA	5 cut(s)	322, 352, 460, 569, 618
MflI	RGATCY	2 cut(s)	485, 559
MhlI	GDGCHC	3 cut(s)	180, 535, 553
MluCI	AATT	3 cut(s)	112, 244, 265
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	3 cut(s)	243, 274, 463
MroI	TCCGGA	1 cut(s)	553
MseI	TTAA	2 cut(s)	141, 264
MspI	CCGG	2 cut(s)	554, 594
MvnI	CGCG	4 cut(s)	182, 350, 635, 657
MwoI	GCNNNNNNNGC	8 cut(s)	11, 101, 179, 539, 548, 629, 638, 647
NlaIII	CATG	1 cut(s)	539
NlaIV	GGNNCC	1 cut(s)	619
NmuCI	GTSAC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	389, 654
PfeI	GAWTC	3 cut(s)	77, 297, 597
PkrI	GCNGC	6 cut(s)	61, 226, 589, 622, 634, 652
Ple19I	CGATCG	4 cut(s)	93, 291, 396, 424
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp124BI	GAGCTC	2 cut(s)	180, 553
PspN4I	GGNNCC	1 cut(s)	619
PsuI	RGATCY	2 cut(s)	485, 559
PvuI	CGATCG	4 cut(s)	93, 291, 396, 424
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SacI	GAGCTC	2 cut(s)	180, 553
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	141, 264
SatI	GCNGC	6 cut(s)	60, 225, 588, 621, 633, 651
SchI	GAGTC	1 cut(s)	218
SduI	GDGCHC	3 cut(s)	180, 535, 553
SetI	ASST	7 cut(s)	106, 180, 208, 264, 273, 434, 553
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	112, 244, 265
SsiI	CCGC	9 cut(s)	57, 60, 109, 182, 192, 238, 621, 633, 651
SstI	GAGCTC	2 cut(s)	180, 553
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	4 cut(s)	49, 139, 149, 277
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	2 cut(s)	75, 212
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	3 cut(s)	112, 244, 265
TauI	GCSGC	4 cut(s)	62, 623, 635, 653
TfiI	GAWTC	3 cut(s)	77, 297, 597
Tru1I	TTAA	2 cut(s)	141, 264
Tru9I	TTAA	2 cut(s)	141, 264
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	224, 587
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	3 cut(s)	61, 365, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.